Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_025255.1 Length=11135 Score E Sequences producing significant alignments: (Bits) Value seq263735 187 2e-43 seq46121 138 8e-29 seq36779 127 1e-25 seq122679 89.7 4e-14 >seq263735 Length=2160 Score = 187 bits (206), Expect = 2e-43 Identities = 419/622 (67%), Gaps = 18/622 (3%) Strand=Plus/Plus Query 6255 GATGATGATCTTGTCATAGGACTCAAAGGGAAAGAGAGAGAATTAAAAATTGCGGGAAGA 6314 ||||| ||| || ||||||||| ||| |||||| | ||| | || | || ||| Sbjct 1204 GATGAGTCTCTAGTTATAGGACTCCGAGGTAAAGAGCGGGAAATGAAGAGAATAGGTAGA 1263 Query 6315 TTCTTTTCTTTGATGTCCTGGAAGCTCAGAGAGTATTTTGTCATCACTGAGTATTTGATT 6374 || ||| | || ||||| ||| | | ||||||||||| | || || | ||| || Sbjct 1264 TTTTTTACCTTAATGTCATGGGCCTTACGTGAGTATTTTGTGTTGACCGAATTTTTAATA 1323 Query 6375 AAGACGCACTTT-GTCCCGATGTTTAAAGGGTTGACCATGGCGGATGACTTGACAGCGGT 6433 || | | ||| |||||| | ||| | | | |||||||| ||||| | || | || Sbjct 1324 AAAAAACTTTTTTGTCCCGTTATTTGATAGACTAACCATGGCTGATGATCTCACTGAAGT 1383 Query 6434 GATAAAGAAGATGATGGACACATCTTCAGGACAAGGCTTAGATAATTATGAATCCATTTG 6493 | |||||||||||| | | ||| || ||||| | ||||| | ||| || Sbjct 1384 AACTAAGAAGATGATGAATAATTCTGATGGTCAAGGATGCCCAGATTATTCACGCATCTG 1443 Query 6494 TATAGCCAACCATATTGACTATGAGAAGTGGAACAATCATCAAAGAAAAGAGTCGAACGG 6553 ||| || ||||| ||||| ||| || ||||| ||||| || ||||| ||||| ||| Sbjct 1444 TATTGCTAACCACATTGATTATACAAAATGGAATAATCACCAGAGAAAGGAGTCCAACAA 1503 Query 6554 GCCCGTGTTCAAGGTGATGGGTCAATTCTTGGGATATCCACGTCTGATTGAGAGAACTCA 6613 | || || | |||||||||||||| || ||||| ||| ||||||| || | ||||| Sbjct 1504 GTATGTATTTAGAGTGATGGGTCAATTTTTAGGATACCCAAGTCTGATAGAACGGACTCA 1563 Query 6614 TGAATTTTTTGAGAAGAGTCTGATATATTACAATGGACGACCAGATCTGATGCGGGTTCG 6673 |||||||||||| || || || || |||||| | || || ||| | ||| || | Sbjct 1564 TGAATTTTTTGAAAAAAGCCTTATTTATTACGTAGCCCGTCCGGATTTAATGGTCGTAAG 1623 Query 6674 AG--GAAATTCT-CTAGTCAACGCCTCATCTTTAAATGTCTGCTGGGAGGGTCAAGCTGG 6730 || | || || | | ||| || || | || || ||| |||| || || Sbjct 1624 AGACGGAACCCTGCAAAACAAAACCCCAGAACAGATCGTGTGTTGGAAGGGCCAGAAAGG 1683 Query 6731 GGGATTAGAAGGACTGCGACAGAAGGGATGGAGTATTCTAAATTTGCTTGTCATTC-AGA 6789 || | || ||||| ||||||| |||||||| ||| |||||| | | |||| ||| Sbjct 1684 TGGGCTGGAGGGACTCAGACAGAAAGGATGGAGCATTGTAAATT---ATTTGATTCTAGA 1740 Query 6790 GAGAAG------CAAAAATAAGGAACACCGCCGTGAAAGTGCTAGCTCAAGGTGACAATC 6843 ||||| ||| | || || ||| || || || |||| ||||| || |||| Sbjct 1741 -AGAAGAGGCCTCAAGAGTA---AATACCAAAGTAAATGTTTTAGCCCAAGGAGATAATC 1796 Query 6844 AGGTGATATGTACTCAGTATAA 6865 |||| || |||||||| ||||| Sbjct 1797 AGGTTATTTGTACTCATTATAA 1818 >seq46121 Length=3043 Score = 138 bits (152), Expect = 8e-29 Identities = 313/467 (67%), Gaps = 14/467 (3%) Strand=Plus/Minus Query 6204 GCAACAGACTGGAAAGAGTTTTTAAAGAAAATTGACGAAGAGGGGTTAGAGGATGATGAT 6263 || |||| ||||||||| || | ||| ||| | || ||||| | || || | Sbjct 1476 GCCACAGTCTGGAAAGACTTCCTCCAGAGGATTAATGACGAGGGACTTCCTGAAGACTCT 1417 Query 6264 CTTGTCATAGGACTCAAAGGGAAAGAGAGAGAATTAAAAATTGCGGGAAGATTCTTTTCT 6323 || ||||| ||| | | | |||||| | || || || ||||| | |||| | Sbjct 1416 CTAGTCATCGGATTGAGGAGAAAAGAGCGGGACTTGAA----GCGGGTCGGGCGTTTTTT 1361 Query 6324 TTGATGTCCTGGAAGCTCAGAGAGTATTTTGTCATCACTGAGTATTTGATTAAGACGCAC 6383 ||| | || || | || ||||| ||||| ||| | ||||| || | || || || Sbjct 1360 TTGCTCTCATG--ACCTGAGAGAATATTTCGTCGTTACTGAATACCTAATCAAAGAACAT 1303 Query 6384 TTTGTCCCGATGTTTAAAGGGTTGACCATGGCGGATGACTTGACAGCGGTGATAAAGAAG 6443 || || || |||| |||| | || |||||||||||| | || | ||||| | |||| Sbjct 1302 TTCGTTCCACTGTTCCAAGGCCTCACTATGGCGGATGACCTCACCGAGGTGACACGGAAG 1243 Query 6444 ATGATGGACACATCTTCAGGACAAGGCT---TAGATAATT-ATGAATCCATTTGTATAGC 6499 || || | | || || ||||| | |||| ||| | || ||||| || || Sbjct 1242 GTGTTGAATAATTCAGATGGGCAAGGATGTCCAGATTATTCAAGA----ATTTGCATTGC 1187 Query 6500 CAACCATATTGACTATGAGAAGTGGAACAATCATCAAAGAAAAGAGTCGAACGGGCCCGT 6559 ||||| || ||||| || || |||||||| |||||| | ||||| || ||| | || Sbjct 1186 TAACCACATAGACTACGAAAAATGGAACAACCATCAACGGAAAGAATCCAACCAACATGT 1127 Query 6560 GTTCAAGGTGATGGGTCAATTCTTGGGATATCCACGTCTGATTGAGAGAACTCATGAATT 6619 ||| | |||||||| || ||| ||||| ||| ||| || || |||||||| || Sbjct 1126 CTTCCAAGTGATGGGCCAGTTCCAAGGATACCCAAATCTAATCACCAGGACTCATGACTT 1067 Query 6620 TTTTGAGAAGAGTCTGATATATTACAATGGACGACCAGATCTGATGC 6666 ||||| ||||||||| | ||||| |||| |||||| | |||| Sbjct 1066 CTTTGAAAAGAGTCTGGTGTATTATGTTGGAATACCAGACTTAATGC 1020 >seq36779 Length=13892 Score = 127 bits (140), Expect = 1e-25 Identities = 399/610 (65%), Gaps = 46/610 (8%) Strand=Plus/Plus Query 6263 TCTTGTCATAGGACTCAAAGGGAAAGAGAGAGAATTAAAAATTGCGGGAAGATTCTTTTC 6322 ||||||||| ||||||| ||||||||||| || | |||| ||||| | || || | Sbjct 5384 TCTTGTCATTGGACTCAGGGGGAAAGAGAGGGAGATGAAAAGAGCGGGTCGGTTTTTAGC 5443 Query 6323 TTTGATGTCCTGGAAGCTCAGAGAGTATTTTGTCATCACTGAGTATTTGATTAAGACGCA 6382 | ||||||||| || | |||| || || || || || || ||| | || ||| ||| Sbjct 5444 ACTTATGTCCTGGGAGTTGCGAGAATACTTCGTGATTACAGAATATCTTATCAAGGAGCA 5503 Query 6383 CTTTGTCCCGATGTTTAAAGGGTTGACCATGGCGGATGACTTGACAGCGGTGATAAAGAA 6442 ||||||||| | ||||| || |||| ||||| ||||||| || ||| | Sbjct 5504 CTTTGTCCCATTATTTAAGGGTCTGACTATGGCCGATGACT---CA------ATA---AC 5551 Query 6443 GATGATGGACACATCTTCAGGACAAGGCTTAGATAATTATGAATCCATTTGTATAGCCAA 6502 |||||||| | | | || || ||| | | |||| ||| |||| || Sbjct 5552 TCCGATGGACAAGGGT----GTCCAGACT---ATACTAA--AATC----TGTGTAGCGAA 5598 Query 6503 CCATATTGACTATGAGAAGTGGAACAATCATCAAAGAAAAGAGTCGAACGGGCCCGTGTT 6562 ||||| |||||||| || |||||||| ||| | || || || || Sbjct 5599 TCATATCGACTATGAAAAATGGAACAACCAT---------AACTCCAATCAATATGTATT 5649 Query 6563 CAAGGTGATGGGTCAATTCTTGGGATATCCACGTCTGATTGAGAGAACTCATGAATTTTT 6622 | || ||||| || || ||||| || || | ||| ||||| | || |||||||| || Sbjct 5650 CCGTGTCATGGGCCAGTTTTTGGGTTACCCTCATCTAATTGAACGGACCCATGAATTCTT 5709 Query 6623 TGAGAAGAGTCTGATATATTACAATGGACGACCAGATCTGATGCGGGTTCGAGGAAATTC 6682 |||||| ||| | || |||||| || || || ||||||||| ||| | | | Sbjct 5710 TGAGAAAAGTTTAATTTATTACGTCGGTCGTCCCGATCTGATGATCCAAAGAGAAGACAC 5769 Query 6683 TCTAGTCAACGCCTCATCTTTA---AATGTCTGCTGGGAGGGTCAAGCTGGGGGATTAGA 6739 | |||| | || | | | ||| |||||| | || || ||||| || | || Sbjct 5770 CTTCCTCAA--CAAGAT-TGGAGAGATTGTTTGCTGGAACGGACAGGCTGGTGGTCTGGA 5826 Query 6740 AGGACTGCGACAGAAGGGATGGAGTATTCTAAATTTGCTTGTCATTCAG--AGA-GAAGC 6796 || || | |||||||||||||| |||| |||| | |||||| | || || | Sbjct 5827 GGGGCTCTGCCAGAAGGGATGGAGCGTTCTGAATT---ATCTCATTCTGGATGATGAGTC 5883 Query 6797 AAAAATAAGGAACACCGCCGTGAAAGTGCTAGCTCAAGGTGACAATCAGGTGATATGTAC 6856 | | | | || ||| ||||| || || || ||||| || |||||||| || ||||| Sbjct 5884 AGAGAAGAAAAATACCAATGTGAACGTCCTGGCCCAAGGAGATAATCAGGTCATTTGTAC 5943 Query 6857 TCAGTATAAA 6866 || || ||| Sbjct 5944 CCACTACAAA 5953 >seq122679 Length=1484 Score = 89.7 bits (98), Expect = 4e-14 Identities = 129/179 (72%), Gaps = 6/179 (3%) Strand=Plus/Plus Query 6489 ATTTGTATAGCCAACCATATTGACTATGAGAAGTGGAACAATCATCAAAGAAAAGAGTCG 6548 ||||| ||||||||||| ||||||| ||||||||||| || ||| | || ||||| Sbjct 759 ATTTGCATAGCCAACCAC--TGACTATACCAAGTGGAACAACCACCAACGCAAGGAGTCT 816 Query 6549 AACGGGCCCGTGTTCAAGGTGATGGGTCAATTCTTGGGATATCC--ACGTCTGATTGAGA 6606 || | || | || || ||||| | ||| || |||||||| | | | || | Sbjct 817 AATAAGTATGTTTACACTGTCATGGGACGATTTTTAGGATATCCCAAAGGC--ATCGCTC 874 Query 6607 GAACTCATGAATTTTTTGAGAAGAGTCTGATATATTACAATGGACGACCAGATCTGATG 6665 |||| ||||| |||||| |||| ||||| |||||||| ||||| || ||| ||||| Sbjct 875 GAACCCATGAGTTTTTTTAGAAAAGTCTCATATATTATGTGGGACGGCCGGATTTGATG 933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35401479436576