Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_025340.1 Length=11176 Score E Sequences producing significant alignments: (Bits) Value seq250369 111 1e-20 seq46121 98.7 7e-17 seq42553 78.8 7e-11 >seq250369 Length=726 Score = 111 bits (122), Expect = 1e-20 Identities = 146/197 (74%), Gaps = 14/197 (7%) Strand=Plus/Minus Query 6214 TGCAGAATGTCAATGACCACGGGCTCAGCCCCGAAGAT--CTT-GTAATCGGGTTGAAAC 6270 ||||| ||||||||| | || ||| ||||| || ||| || || ||||||| | Sbjct 528 TGCAGTGTGTCAATGATGAAGGTCTC---CCCGATGACTCCTTAGTCATTGGGTTGAGAG 472 Query 6271 CAAAAGAAAGGGAGTTAAAGGACGAAGGTCG----ATTTTTCTCTCTCATGGGTTGGAAT 6326 |||||| ||||| | | || || ||||| ||||||| |||| ||| |||| || Sbjct 471 GAAAAGA--GGGAG--AGATGAAGAGGGTCGGAAGATTTTTCGCTCTAATGTCTTGGGAT 416 Query 6327 CTGAGGTTGTACTTTGTTATCACTGAGTACCTCATTAAAAAACTCTTTGTCCCACTATTC 6386 || || |||||||||| | || ||||| ||||||||| ||| ||||||||| |||||| Sbjct 415 CTTCGGGTGTACTTTGTGCTAACAGAGTATCTCATTAAAGAACACTTTGTCCCCCTATTC 356 Query 6387 AAAGGGCTCACCATGGC 6403 ||||| | || ||||| Sbjct 355 AAAGGATTGACAATGGC 339 >seq46121 Length=3043 Score = 98.7 bits (108), Expect = 7e-17 Identities = 246/368 (67%), Gaps = 22/368 (6%) Strand=Plus/Minus Query 6209 CTTCTTGCAGAATGTCAATGACCACGGGCTCAGCCCCGAAGA---TCTTGTAATCGGGTT 6265 |||| | |||| | |||||| | || || || ||||| ||| || ||||| || Sbjct 1459 CTTCCTCCAGAGGATTAATGACGAGGGACTT---CCTGAAGACTCTCTAGTCATCGGATT 1403 Query 6266 GAAACCAAAAGAAAGGGAGTTAAAGGACGAAGGTCGATTTTTCT-CTCTCATGGGTTGGA 6324 || |||||| |||| || ||| | || || ||||| | |||||||| Sbjct 1402 GAGGAGAAAAGAGCGGGACTTGAAGCGGGTCGGGCGTTTTTTTTGCTCTCATG------- 1350 Query 6325 ATCTGAGGTTGTACTTTGTTATCACTGAGTACCTCATTAAAAAACTCTTTGTCCCACTAT 6384 | ||||| || || || | ||||| ||||| || ||| ||| || || ||||| | Sbjct 1349 ACCTGAGAGAATATTTCGTCGTTACTGAATACCTAATCAAAGAACATTTCGTTCCACTGT 1290 Query 6385 TCAAAGGGCTCACCATGGCTGACGACCTCAACACTGTCACTAAGAAGATGATCGCTGCAA 6444 || |||| ||||| ||||| || ||||||| | || || |||| || | | Sbjct 1289 TCCAAGGCCTCACTATGGCGGATGACCTCACCGAGGTGACACGGAAGGTGTTGAATAATT 1230 Query 6445 CTGAAGGCCAGGGGCTATGT---GATTACTCACGTGTGTACATAGCCAATTCACTT-GAT 6500 | || || || || |||| ||||| ||| | | | ||| || || ||| | || Sbjct 1229 CAGATGGGCAAGG---ATGTCCAGATTATTCAAGAATTTGCATTGCTAAC-CACATAGAC 1174 Query 6501 TATGAGAAGTGGAACAACAATCAACGATACGAGTCCAACCAACATGTGTTTCGAGTTATG 6560 || || || ||||||||| ||||||| | || |||||||||||||| || | ||| ||| Sbjct 1173 TACGAAAAATGGAACAACCATCAACGGAAAGAATCCAACCAACATGTCTTCCAAGTGATG 1114 Query 6561 GGGAAGTT 6568 || |||| Sbjct 1113 GGCCAGTT 1106 >seq42553 Length=2057 Score = 78.8 bits (86), Expect = 7e-11 Identities = 99/136 (73%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 6301 GATTTTTCTCTCTCATGGGTTGGAATCTGAGGTTGTACTTTGTTATCACTGAGTACCTCA 6360 ||||||| |||||||| ||| |||| | ||||||||| |||| |||||||||| Sbjct 574 GATTTTTTGCTCTCATGTCCTGGGATCTTCGAGAGTACTTTGTCCTCACAGAGTACCTCA 515 Query 6361 TTAAAAAACTCTTTGTCCCACTATTCAAAGGGCTCACCATGGCTGACGACCTCAACACTG 6420 | ||| | | ||| ||||| | |||||||| | || ||||| ||||| || | | Sbjct 514 TCAAAGAGCACTTCGTCCCCTTGTTCAAAGGATTAACAATGGCCGACGATCTGACTGAGG 455 Query 6421 TCACTAAGAAGATGAT 6436 | || | ||||||||| Sbjct 454 TTACAAGGAAGATGAT 439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35532253439360