Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_025341.1 Length=11139 Score E Sequences producing significant alignments: (Bits) Value seq46121 174 1e-39 seq263735 116 3e-22 seq22788 95.1 9e-16 seq36779 89.7 4e-14 >seq46121 Length=3043 Score = 174 bits (192), Expect = 1e-39 Identities = 324/468 (69%), Gaps = 16/468 (3%) Strand=Plus/Minus Query 6219 GAATTCCTCCACCAGGTGAATGA-GACAGGCTTACCTGAGGACTCATTGATCATCGGATT 6277 || |||||||| | | ||||| || | ||| ||||| ||||| | |||||||||| Sbjct 1461 GACTTCCTCCAGAGGATTAATGACGAGGGACTT-CCTGAAGACTCTCTAGTCATCGGATT 1403 Query 6278 GAAAGGGAAAGAGAGAGAAGTGAAAGTAAAAGGACGGTTCTTTT-CACTCATGTCGTGGA 6336 || | |||||| | || |||| || || || |||| | |||||| | || Sbjct 1402 GAGGAGAAAAGAGCGGGACTTGAAGCGGGTCGGGCGTTTTTTTTGCTCTCATGACCTG-- 1345 Query 6337 AACTAAGAGAATATTTTGTTGTCACAGAATACCTAATCAAAGAACATTTCGTCCCTCTCT 6396 ||||||||||| || || || |||||||||||||||||||||||||| || || | Sbjct 1344 -----AGAGAATATTTCGTCGTTACTGAATACCTAATCAAAGAACATTTCGTTCCACTGT 1290 Query 6397 TCAATGGATTGACTATGGCGGATGACATGACCACCGTAATATCAAAACTAATGGATCGCA 6456 || | || | ||||||||||||||| | ||| || | | || | || || | Sbjct 1289 TCCAAGGCCTCACTATGGCGGATGACCTCACCGAGGTGACACGGAAGGTGTTGAAT--AA 1232 Query 6457 CTCAG--GGCCAAGGAGGAGAGGACTACACCCAAGTTTGCATTGCTAATCATATCGATTA 6514 |||| || |||||| | || || | | ||||||||||||| || || || || Sbjct 1231 TTCAGATGGGCAAGGATGTCCAGATTATTCAAGAATTTGCATTGCTAACCACATAGACTA 1172 Query 6515 TGAAAAGTGGAACAATCATC-AGAGAAAGCGTGCAACCGGACCTGTGTTCATAGTCATGG 6573 ||||| |||||||| |||| | ||||| | ||||| || ||| ||| ||| |||| Sbjct 1171 CGAAAAATGGAACAACCATCAACGGAAAGAATCCAACC-AACATGTCTTCCAAGTGATGG 1113 Query 6574 GACAATTCCTTGGATTTCCTAAACTGATCTATAGAACACATGAGTTCTTTGAATCTAGCT 6633 | || |||| |||| || || || ||| || || ||||| ||||||||| || Sbjct 1112 GCCAGTTCCAAGGATACCCAAATCTAATCACCAGGACTCATGACTTCTTTGAAAAGAGTC 1053 Query 6634 GGGTGTATTACAATGCTAGACCTGATTTAATGGTCATCCGAGATGGGA 6681 ||||||||| || | ||| || |||||| || |||||||||| Sbjct 1052 TGGTGTATTATGTTGGAATACCAGACTTAATGCTCCAACGAGATGGGA 1005 >seq263735 Length=2160 Score = 116 bits (128), Expect = 3e-22 Identities = 423/648 (65%), Gaps = 22/648 (3%) Strand=Plus/Plus Query 6232 AGGTGAATGAGACAGGCTTACCTGAGGACTCATTGATCATCGGATTGAAAGGGAAAGAGA 6291 |||| ||||| | ||| | || || || || | | || ||| | ||| |||||| Sbjct 1181 AGGTTAATGACAATGGCCTGCCCGATGAGTCTCTAGTTATAGGACTCCGAGGTAAAGAGC 1240 Query 6292 GAGAAGTGAAAGTAAAAGGACGGTTCTTTTCACTCATGTCGTGGAAACTAAGAGAATATT 6351 | ||| |||| || ||| | || ||| | | ||||| ||| || | || |||| Sbjct 1241 GGGAAATGAAGAGAATAGGTAGATTTTTTACCTTAATGTCATGGGCCTTACGTGAGTATT 1300 Query 6352 TTGTTGTCACAGAATACCTAATCAAAGAACATTTC-GTCCCTCTCTTCAATGGATTGACT 6410 |||| | || |||| |||| ||| ||| ||| ||||| | || || || | || Sbjct 1301 TTGTGTTGACCGAATTTTTAATAAAAAAACTTTTTTGTCCCGTTATTTGATAGACTAACC 1360 Query 6411 ATGGCGGATGACATGACCACCGTAA-TATCAAAACTAATGGATCGCACTCAGGGCCAAGG 6469 ||||| ||||| | || |||| || || | | ||| || || | || ||||| Sbjct 1361 ATGGCTGATGATCTCACTGAAGTAACTAAGAAGA-TGATGAATAATTCTGATGGTCAAGG 1419 Query 6470 AGGAGAGGACTA--CACCCAAGTTTGCATTGCTAATCATATCGATTATGAAAAGTGGAAC 6527 | | || || ||| || | || |||||||| || || |||||| ||| ||||| Sbjct 1420 ATGCCCAGATTATTCACGCA--TCTGTATTGCTAACCACATTGATTATACAAAATGGAAT 1477 Query 6528 AATCATCAGAGAAAGC-GTGCAACCGGACCTGTGTTCATAGTCATGGGACAATTCCTTGG 6586 ||||| ||||||||| || |||| | ||| || | ||| ||||| ||||| | || Sbjct 1478 AATCACCAGAGAAAGGAGTCCAACAAGTA-TGTATTTAGAGTGATGGGTCAATTTTTAGG 1536 Query 6587 ATTTCCTAAACTGATCTATAGAACACATGAGTTCTTTGAATCTAGCTGGGTGTATTACAA 6646 || || | ||||| | | || ||||| || |||||| ||| | |||||| Sbjct 1537 ATACCCAAGTCTGATAGAACGGACTCATGAATTTTTTGAAAAAAGCCTTATTTATTACGT 1596 Query 6647 TGCTAGACCTGATTTAATGGTCATCCGAGATGGGAGATTAGAAAATCTAGGTCCTGAA-- 6704 || | || |||||||||||| | |||| || | | |||| | || ||| Sbjct 1597 AGCCCGTCCGGATTTAATGGTCGTAAGAGACGGAACCCTGCAAAACAAAACCCCAGAACA 1656 Query 6705 -ATAGTTTGTTGGAATGGACAAGATGGGGGGTTAGAAGGGCTACGACAGAAAGGATGGAC 6763 || || |||||||| || || | || ||| | || || || ||||||||||||||| Sbjct 1657 GATCGTGTGTTGGAAGGGCCAGAAAGGTGGGCTGGAGGGACTCAGACAGAAAGGATGGAG 1716 Query 6764 AGTGGTCGGGTTACTCATGATACGGAGAGAAGCTAGGGTT--AG---AAACACCGCTGTC 6818 | || ||| | |||| | ||||| ||| | || ||| ||| || Sbjct 1717 CATTGT-AAATTATT--TGATTCTAGAAGAAG--AGGCCTCAAGAGTAAATACCAAAGTA 1771 Query 6819 AAGATACTGGCTCAGGGAGATAATCAGGTGATTTGTTCTCAATATAAG 6866 || | | || || |||||||||||||| |||||| |||| |||||| Sbjct 1772 AATGTTTTAGCCCAAGGAGATAATCAGGTTATTTGTACTCATTATAAG 1819 >seq22788 Length=2006 Score = 95.1 bits (104), Expect = 9e-16 Identities = 231/347 (67%), Gaps = 5/347 (1%) Strand=Plus/Minus Query 6207 ACCAATTGGCCTGAATTCCTCCACCAGGTGAATGAGACAGGCTTACCTGAGGACTCATTG 6266 || |||||| || ||||| || | | ||||| | |||||| || | | ||| Sbjct 1867 ACGAATTGGAAGGAGTTCCTTCAAGACATCAATGACAACGGCTTAGACGAAAATTACTTG 1808 Query 6267 ATCATCGGATTGAAAGGGAAAGAGAGAGAAGTGAAAGTAAAAGGACGGTTCTTTTCACTC 6326 | |||||| | | ||||||||| ||||| |||| | ||| | | || | | Sbjct 1807 GTTATCGGACTAAGAGGGAAAGAACGAGAAATGAAGAGGATCGGAAGATATTTCGCCTTA 1748 Query 6327 ATGTCGTGGAAACTAAGAGAATATTTTGTTGTCACAGAATACCTAATCAAAGAACATTTC 6386 ||||| |||||||| | || || ||||| ||||||| || || ||||| | ||| Sbjct 1747 ATGTCATGGAAACTCCGTGAGTACTTTGTGATCACAGAGTATCTGATCAAGAAGTATTAT 1688 Query 6387 GTCCCTCTCTTCAATGGATTGACTATGGCGGATGACATGACCACCGTAATATCAAAACTA 6446 || || | ||||| || | || ||||| || || | ||| || || ||| | Sbjct 1687 GTTCCGTTATTCAAGGGGCTAACAATGGCTGACGATCTAACCGAGGTGATGAAAAAGATG 1628 Query 6447 ATGGATCGCACTCAG--GGCCAAGGAGGAGAGGACTACACCCAAGTTTGCATTGCTAATC 6504 ||| | | | |||| || |||||| | | ||||||||| ||| ||||| || || | Sbjct 1627 ATGAACC--ATTCAGATGGTCAAGGATGTGCAGACTACACCAGAGTCTGCATAGCGAACC 1570 Query 6505 ATATCGATTATGAAAAGTGGAACAATCATCAG-AGAAAGCGTGCAAC 6550 |||| ||||| ||||||||||| || ||| || |||| |||| Sbjct 1569 ATATAGATTACACCAAGTGGAACAACCACCAGCGGATGGCGTCCAAC 1523 >seq36779 Length=13892 Score = 89.7 bits (98), Expect = 4e-14 Identities = 120/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 6256 AGGACTCATTGATCATCGGATTGAAAGGGAAAGAGAGAGAAGTGAAAGTAAAAGGACGGT 6315 ||||||| | |||| ||| | | ||||||||||| || ||||| | || |||| Sbjct 5377 AGGACTCTCTTGTCATTGGACTCAGGGGGAAAGAGAGGGAGATGAAAAGAGCGGGTCGGT 5436 Query 6316 TCTTTTCACTCATGTCGTGGAAACTAAGAGAATATTTTGTTGTCACAGAATACCTAATCA 6375 | || |||| ||||| ||| | | ||||||| || || | |||||||| || |||| Sbjct 5437 TTTTAGCACTTATGTCCTGGGAGTTGCGAGAATACTTCGTGATTACAGAATATCTTATCA 5496 Query 6376 AAGAACATTTCGTCCCTCTCTTCAATGGATTGACTATGGCGGATGAC 6422 | || || || ||||| | || || || |||||||||| |||||| Sbjct 5497 AGGAGCACTTTGTCCCATTATTTAAGGGTCTGACTATGGCCGATGAC 5543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35414237875872