Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_025342.1 Length=11120 Score E Sequences producing significant alignments: (Bits) Value seq46121 141 7e-30 seq36779 113 3e-21 seq250369 98.7 7e-17 >seq46121 Length=3043 Score = 141 bits (156), Expect = 7e-30 Identities = 229/327 (70%), Gaps = 2/327 (1%) Strand=Plus/Minus Query 6319 TGAGGGAATATTTCGTTGTTACAGAATATCTTATAAAGGAGCATTTCGTCCCATTATTCA 6378 |||| ||||||||||| ||||| ||||| || || || || |||||||| ||| | ||| Sbjct 1346 TGAGAGAATATTTCGTCGTTACTGAATACCTAATCAAAGAACATTTCGTTCCACTGTTCC 1287 Query 6379 ATGGGTTGACAATGGCAGATGACATGACGACAGTGATATCGAAATTGATGGACAGAACCC 6438 | || | || ||||| |||||| | || |||| | ||| || || | | | Sbjct 1286 AAGGCCTCACTATGGCGGATGACCTCACCGAGGTGACACGGAAGGTGTTGAATAATTCAG 1227 Query 6439 AAGGTCAGGGCGGAGAGGACTACACACAAATCTGCATCGCCAATCACATTGACTATGAAA 6498 | || || || | || || || ||| ||||| || || ||||| ||||| |||| Sbjct 1226 ATGGGCAAGGATGTCCAGATTATTCAAGAATTTGCATTGCTAACCACATAGACTACGAAA 1167 Query 6499 AATGGAACAATCATCAAAGAAAGGACGCCACCGGCCCTGTCTTTAAGGTCATGGGACAGT 6558 |||||||||| |||||| | || || ||| | | |||||| | || ||||| |||| Sbjct 1166 AATGGAACAACCATCAACGGAAAGAATCCAACCAACATGTCTTCCAAGTGATGGGCCAGT 1107 Query 6559 TCTTGGGATTACCAAATTTAATCTATCGAACACATGAGTTCTTTGAACAGAG-CTGGATT 6617 || |||| |||||| ||||| | || ||||| ||||||||| |||| |||| | Sbjct 1106 TCCAAGGATACCCAAATCTAATCACCAGGACTCATGACTTCTTTGAAAAGAGTCTGG-TG 1048 Query 6618 TATTATAATGGTAGGCCTGATTTGATG 6644 |||||| ||| | || || || ||| Sbjct 1047 TATTATGTTGGAATACCAGACTTAATG 1021 >seq36779 Length=13892 Score = 113 bits (124), Expect = 3e-21 Identities = 263/398 (66%), Gaps = 34/398 (9%) Strand=Plus/Plus Query 6247 TCATTGGGTTAAAAGGGAAAGAGCGTGAAGTAAAAATTAAGGGACGATTCTTCTCTTTGA 6306 ||||||| | | ||||||||| | || | |||| ||| || || || | | | Sbjct 5389 TCATTGGACTCAGGGGGAAAGAGAGGGAGATGAAAAGAGCGGGTCGGTTTTTAGCACTTA 5448 Query 6307 TGTCTTGGAGATTGAGGGAATATTTCGTTGTTACAGAATATCTTATAAAGGAGCATTTCG 6366 |||| ||| ||| | ||||| ||||| |||||||||||||||| |||||||| || | Sbjct 5449 TGTCCTGGGAGTTGCGAGAATACTTCGTGATTACAGAATATCTTATCAAGGAGCACTTTG 5508 Query 6367 TCCCATTATTCAATGGGTTGACAATGGCAGATGACATGACGACAGTGATATCGAAATTGA 6426 |||||||||| || || |||| ||||| |||||| | | ||| | || Sbjct 5509 TCCCATTATTTAAGGGTCTGACTATGGCCGATGAC-TCA--------ATA---ACTCCGA 5556 Query 6427 TGGACAGAACCCAAGGTCAGGGCGGAGAGGACTACACACAAATCTGCATCGCCAATCACA 6486 |||||| |||| | | ||||| || ||||||| | || ||||| | Sbjct 5557 TGGACA------------AGGGTGTCCA-GACTATACTAAAATCTGTGTAGCGAATCATA 5603 Query 6487 TTGACTATGAAAAATGGAACAATCATCAAAGAAAGGACGCCACCGGCCCTGTCTTTAAGG 6546 | |||||||||||||||||||| ||| || ||| ||| || | Sbjct 5604 TCGACTATGAAAAATGGAACAACCAT---------AACTCCAATCAATATGTATTCCGTG 5654 Query 6547 TCATGGGACAGTTCTTGGGATTACCAAATTTAATCTATCGAACACATGAGTTCTTTGAAC 6606 ||||||| ||||| ||||| | || || |||| | || || ||||| |||||||| Sbjct 5655 TCATGGGCCAGTTTTTGGGTTACCCTCATCTAATTGAACGGACCCATGAATTCTTTGAGA 5714 Query 6607 AGAGCTGGATTTATTATAATGGTAGGCCTGATTTGATG 6644 | || | |||||||| ||| | || ||| ||||| Sbjct 5715 AAAGTTTAATTTATTACGTCGGTCGTCCCGATCTGATG 5752 >seq250369 Length=726 Score = 98.7 bits (108), Expect = 7e-17 Identities = 241/362 (67%), Gaps = 20/362 (6%) Strand=Plus/Minus Query 6247 TCATTGGGTTAAAAGGGAAAGAGCGTGAAGTAAAAATTAAGGGACGATTCTTCTCTTTGA 6306 |||||||||| | ||| |||||| | || | || | ||| |||| ||| || | | Sbjct 486 TCATTGGGTTGAGAGGAAAAGAGGGAGAGATGAAGAGGGTCGGAAGATTTTTCGCTCTAA 427 Query 6307 TGTCTTGGAGAT-TGAGGGAATATTTCGTTGTTACAGAATATCTTATAAAGGAGCATTTC 6365 |||||||| ||| | ||| || || || | ||||| ||||| || || || || || Sbjct 426 TGTCTTGG-GATCTTCGGGTGTACTTTGTGCTAACAGAGTATCTCATTAAAGAACACTTT 368 Query 6366 GTCCCATTATTCAATGGGTTGACAATGGCAGATGACATGACGACAGTGATATCGAAATTG 6425 ||||| ||||||| || ||||||||||| |||| |||| ||| | |||| || Sbjct 367 GTCCCCCTATTCAAAGGATTGACAATGGCCAATGATCTGACCGAAGTTACCAGGAAAATG 308 Query 6426 ATGGACAG-AACCC--AAGGTCAGGGCGGAGAGGACTACACACAAATCTGCATCGCCAAT 6482 | | || || | | || ||||| | || ||| | | |||| || || ||| Sbjct 307 A--AAAAGTTACTCGGACGGGCAGGGTTGTCCCGATTACTCGAAGATCTCTATAGCAAAT 250 Query 6483 CACATTGACTATGAAAAATGGAACAATCATCAAAGAAAGGACGCCACCGGCCCTGTCTTT 6542 |||| || || |||| ||||| ||||||||| | ||||| |||||| Sbjct 249 TACATCGATTACAAAAAGTGGAATAATCATCAACGGAAGGA-------------GTCTTT 203 Query 6543 AAGGTCATGGGACAGTTCTTGGGATTACCAAATTTAATCTATCGAACACATGAGTTCTTT 6602 | |||||||| || |||||||| | || | | || | || |||||||||||| Sbjct 202 ACCGTCATGGGTCAATTCTTGGGCTACCCTACCCTCATTGCCTGCACTCATGAGTTCTTT 143 Query 6603 GA 6604 || Sbjct 142 GA 141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35353635289216