Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_025353.1 Length=11070 Score E Sequences producing significant alignments: (Bits) Value seq263735 185 6e-43 seq46121 141 7e-30 seq36779 140 2e-29 seq250369 127 1e-25 seq22788 113 3e-21 seq122679 89.7 4e-14 >seq263735 Length=2160 Score = 185 bits (204), Expect = 6e-43 Identities = 390/572 (68%), Gaps = 26/572 (5%) Strand=Plus/Plus Query 6282 GGCAGAtttttttCTCTTATGTCCTGGAAGTTGAGAGAATATTTCGTCATTACGGAGTAT 6341 || ||||||||| | | ||||| ||| || | || ||||| || | || || | | Sbjct 1258 GGTAGATTTTTTACCTTAATGTCATGGGCCTTACGTGAGTATTTTGTGTTGACCGAATTT 1317 Query 6342 TTAATAAAGACACATTTT-GTCCCCATGTTTAAGGGATTGACAATGGCAGATGATCTAAC 6400 |||||||| | || |||| ||||| | ||| | || | || ||||| |||||||| || Sbjct 1318 TTAATAAAAAAACTTTTTTGTCCCGTTATTTGATAGACTAACCATGGCTGATGATCTCAC 1377 Query 6401 AGCTGTCATAAAGAAAATGATGGATACCTCATCAGGACAGGGTTTG---GATAATTACGA 6457 | || | ||||| |||||| ||| || || || || | ||| ||| | Sbjct 1378 TGAAGTAACTAAGAAGATGATGAATAATTCTGATGGTCAAGGATGCCCAGATTATTC--A 1435 Query 6458 CTCAATTTGCATAGCCAATCACATTGATTATGAGAAGTGGAACAATCACCAGCGGAAAGA 6517 | || | || || || || |||||||||||| || ||||| ||||||||| | || || Sbjct 1436 CGCA-TCTGTATTGCTAACCACATTGATTATACAAAATGGAATAATCACCAGAGAAAGGA 1494 Query 6518 ATCCAATGGTCCTGTTTTTAGGGTAATGGGACAATTCCTTGGCTACCCCAATTTGATTGA 6577 ||||| ||| ||||| || ||||| ||||| | || ||||| | | |||| || Sbjct 1495 GTCCAACAAGTATGTATTTAGAGTGATGGGTCAATTTTTAGGATACCCAAGTCTGATAGA 1554 Query 6578 ACGCACCCATGAATTCTTTGAAAAAAGTCTGATTTACTATAATGGACGTCCAGACCTGAT 6637 ||| || |||||||| ||||||||||| || ||||| || | ||||| || | || Sbjct 1555 ACGGACTCATGAATTTTTTGAAAAAAGCCTTATTTATTACGTAGCCCGTCCGGATTTAAT 1614 Query 6638 GCGAGTAA---ACGGAAACACCTTAGAAAACAGAACACC---TCTCAACGTTTGTTGGCA 6691 | |||| ||||| ||| | |||||| ||| || | | ||| |||||| | Sbjct 1615 GGTCGTAAGAGACGGA---ACCCTGCAAAACAAAACCCCAGAACAGATCGTGTGTTGGAA 1671 Query 6692 AGGTCAAGCTGGAGGCTTAGAGGGGCTTAGACAAAAAGGATGGAGCATCCTGAATCTTCT 6751 || || || || | ||||| || ||||| |||||||||||||| || | || | Sbjct 1672 GGGCCAGAAAGGTGGGCTGGAGGGACTCAGACAGAAAGGATGGAGCAT--TGTAAATTAT 1729 Query 6752 TGTGATTCAAAGAGAAG-----CAAAGATTCGAAATACAGCGGTCAAGGTGCTAGCTCAG 6806 | |||||| | ||||| |||| | |||||| || || || |||| || Sbjct 1730 T-TGATTCTAGAAGAAGAGGCCTCAAGAGT--AAATACCAAAGTAAATGTTTTAGCCCAA 1786 Query 6807 GGAGACAATCAGGTCATTTGCACGCAATATAA 6838 ||||| |||||||| ||||| || || ||||| Sbjct 1787 GGAGATAATCAGGTTATTTGTACTCATTATAA 1818 >seq46121 Length=3043 Score = 141 bits (156), Expect = 7e-30 Identities = 278/405 (69%), Gaps = 16/405 (4%) Strand=Plus/Minus Query 6240 GTCATCGGGCTGAAAGGGAAAGAACGAGAATTAAAATTGGCCGGCAGAttttttt-CTCT 6298 |||||||| ||| | ||||| || || || || || ||| | ||||||| |||| Sbjct 1413 GTCATCGGATTGAGGAGAAAAGAGCGGGACTTGAAGCGGGTCGGGCGTTTTTTTTGCTCT 1354 Query 6299 TATGTCCTGGAAGTTGAGAGAATATTTCGTCATTACGGAGTATTTAAT-AAAGACACATT 6357 ||| |||| ||||||||||||||| |||| || || |||| ||||| ||||| Sbjct 1353 CATGACCTG-------AGAGAATATTTCGTCGTTACTGAATACCTAATCAAAGA-ACATT 1302 Query 6358 TTGTCCCCATGTTTAAGGGATTGACAATGGCAGATGATCTAACAGCTGTCATAAAGAAAA 6417 | || || |||| | || | || ||||| ||||| || || | || | | ||| Sbjct 1301 TCGTTCCACTGTTCCAAGGCCTCACTATGGCGGATGACCTCACCGAGGTGACACGGAAGG 1242 Query 6418 TGATGGATACCTCATCAGGACAGGGTTTG---GATAATTACGACTCAATTTGCATAGCCA 6474 || || ||| ||| || || || | ||| ||| | | ||||||||| || | Sbjct 1241 TGTTGAATAATTCAGATGGGCAAGGATGTCCAGATTATT-CAAG--AATTTGCATTGCTA 1185 Query 6475 ATCACATTGATTATGAGAAGTGGAACAATCACCAGCGGAAAGAATCCAATGGTCCTGTTT 6534 | ||||| || || || || |||||||| || || |||||||||||||| | ||| | Sbjct 1184 ACCACATAGACTACGAAAAATGGAACAACCATCAACGGAAAGAATCCAACCAACATGTCT 1125 Query 6535 TTAGGGTAATGGGACAATTCCTTGGCTACCCCAATTTGATTGAACGCACCCATGAATTCT 6594 | || ||||| || |||| || ||||| ||| | || | || ||||| |||| Sbjct 1124 TCCAAGTGATGGGCCAGTTCCAAGGATACCCAAATCTAATCACCAGGACTCATGACTTCT 1065 Query 6595 TTGAAAAAAGTCTGATTTACTATAATGGACGTCCAGACCTGATGC 6639 ||||||| |||||| | || ||| |||| |||||| | |||| Sbjct 1064 TTGAAAAGAGTCTGGTGTATTATGTTGGAATACCAGACTTAATGC 1020 >seq36779 Length=13892 Score = 140 bits (154), Expect = 2e-29 Identities = 395/604 (65%), Gaps = 42/604 (7%) Strand=Plus/Plus Query 6240 GTCATCGGGCTGAAAGGGAAAGAACGAGAATTAAAATTGGCCGGCAGAtttttttCTCTT 6299 ||||| || || | |||||||| | || | ||| || || | ||||| | ||| Sbjct 5388 GTCATTGGACTCAGGGGGAAAGAGAGGGAGATGAAAAGAGCGGGTCGGTTTTTAGCACTT 5447 Query 6300 ATGTCCTGGAAGTTGAGAGAATATTTCGTCATTACGGAGTATTTAATAAAGACACATTTT 6359 ||||||||| ||||| ||||||| ||||| ||||| || ||| | || ||| || ||| Sbjct 5448 ATGTCCTGGGAGTTGCGAGAATACTTCGTGATTACAGAATATCTTATCAAGGAGCACTTT 5507 Query 6360 GTCCCCATGTTTAAGGGATTGACAATGGCAGATGATCTAACAGCTGTCATAAAGAAAATG 6419 ||||| | |||||||| |||| ||||| ||||| || | ||| | | Sbjct 5508 GTCCCATTATTTAAGGGTCTGACTATGGCCGATGA-CTCA--------ATA---ACTCCG 5555 Query 6420 ATGGATACCTCATCAGGACAGGGTTTGGATAAT-TACGACTCAATTTGCATAGCCAATCA 6478 ||||| | ||||| | | | | ||| | ||| || |||| ||||| Sbjct 5556 ATGGACA------------AGGGTGTCCAGACTATACTA--AAATCTGTGTAGCGAATCA 5601 Query 6479 CATTGATTATGAGAAGTGGAACAATCACCAGCGGAAAGAATCCAATGGTCCTGTTTTTAG 6538 || || ||||| || |||||||| | | | |||||| ||| || | Sbjct 5602 TATCGACTATGAAAAATGGAACAACC---------ATAACTCCAATCAATATGTATTCCG 5652 Query 6539 GGTAATGGGACAATTCCTTGGCTACCCCAATTTGATTGAACGCACCCATGAATTCTTTGA 6598 || ||||| || || | || ||||| || | |||||||| ||||||||||||||||| Sbjct 5653 TGTCATGGGCCAGTTTTTGGGTTACCCTCATCTAATTGAACGGACCCATGAATTCTTTGA 5712 Query 6599 AAAAAGTCTGATTTACTATAATGGACGTCCAGACCTGATGCGAGTAAACGGAAACACCTT 6658 |||||| | ||||| || || ||||| || |||||| || | | ||||||| Sbjct 5713 GAAAAGTTTAATTTATTACGTCGGTCGTCCCGATCTGATGATCCAAAGAGAAGACACCTT 5772 Query 6659 AGAAAACAGAACACCTCTCAACGTTTGTTGGCAAGGTCAAGCTGGAGGCTTAGAGGGGCT 6718 |||| | | ||||| ||| | || || ||||| || | |||||||| Sbjct 5773 CCTCAACAAGATTGGAGAGATTGTTTGCTGGAACGGACAGGCTGGTGGTCTGGAGGGGCT 5832 Query 6719 TAGACAAAAAGGATGGAGCATCCTGAATCTTCTTGTGATTC--AAAGA-GAAGCAAAGAT 6775 | || || ||||||||| | |||||| || | |||| | || || || ||| Sbjct 5833 CTGCCAGAAGGGATGGAGCGTTCTGAATTATC---TCATTCTGGATGATGAGTCAGAGAA 5889 Query 6776 TCGAAATACAGCGGTCAAGGTGCTAGCTCAGGGAGACAATCAGGTCATTTGCACGCAATA 6835 |||||| || || || || || || ||||| |||||||||||||| || || || Sbjct 5890 GAAAAATACCAATGTGAACGTCCTGGCCCAAGGAGATAATCAGGTCATTTGTACCCACTA 5949 Query 6836 TAAA 6839 ||| Sbjct 5950 CAAA 5953 >seq250369 Length=726 Score = 127 bits (140), Expect = 1e-25 Identities = 258/381 (68%), Gaps = 18/381 (5%) Strand=Plus/Minus Query 6237 TTGGTCATCGGGCTGAAAGGGAAAGAACGAGAATTAAAATTGGCCGGCAGAtttttttCT 6296 || ||||| ||| ||| ||| ||||| |||| | || || ||| |||||||| || Sbjct 490 TTAGTCATTGGGTTGAGAGGAAAAGAGGGAGAGATGAAGAGGGTCGGAAGATTTTTCGCT 431 Query 6297 CTTATGTCCTGGAAGTTGAGAGAATATTTCGTCATTACGGAGTATTTAAT-AAAGACACA 6355 || ||||| ||| | | | | || || || | || |||||| | || ||||| ||| Sbjct 430 CTAATGTCTTGGGATCTTCGGGTGTACTTTGTGCTAACAGAGTATCTCATTAAAGA-ACA 372 Query 6356 TTTTGTCCCCATGTTTAAGGGATTGACAATGGCAGATGATCTAACAGCTGTCATAAAGAA 6415 ||||||||| | || || |||||||||||||| ||||||| || | || | | ||| Sbjct 371 CTTTGTCCCCCTATTCAAAGGATTGACAATGGCCAATGATCTGACCGAAGTTACCAGGAA 312 Query 6416 AATGATGGA-TACCTCATCAGGACAGGGTTTGGATAATTACGACTCAATTTGCATAGCCA 6474 ||||| | | ||| || ||||||| ||||| || | ||||| | Sbjct 311 AATGAAAAAGTTACTCGGACGGGCAGGGTTGTCCCGATTACTCGAAGATCTCTATAGCAA 252 Query 6475 ATCACATTGATTATGAGAAGTGGAACAATCACCAGCGGAAAGAATCCAATGGTCCTGTTT 6534 || |||| ||||| | |||||||| ||||| || ||||| || || | Sbjct 251 ATTACATCGATTACAAAAAGTGGAATAATCATCAACGGAAGGA-------------GTCT 205 Query 6535 TTAGGGTAATGGGACAATTCCTTGGCTACCCCAATTTGATTGAACGCACCCATGAATTCT 6594 ||| || ||||| |||||| | |||||||| | | |||| |||| ||||| |||| Sbjct 204 TTACCGTCATGGGTCAATTCTTGGGCTACCCTACCCTCATTGCCTGCACTCATGAGTTCT 145 Query 6595 TTGAAAAAAGTCTGATTTACT 6615 ||| | |||||| || |||| Sbjct 144 TTG--AGAAGTCTCATCTACT 126 >seq22788 Length=2006 Score = 113 bits (124), Expect = 3e-21 Identities = 216/315 (69%), Gaps = 10/315 (3%) Strand=Plus/Minus Query 6202 CATCAATAGACAAATATGGCTTAGAACTGGAAGATT---TGGTCATCGGGCTGAAAGGGA 6258 ||||||| ||||| |||||||| ||| ||| |||| ||||| || | ||||| Sbjct 1841 CATCAAT-GACAAC---GGCTTAGAC---GAAAATTACTTGGTTATCGGACTAAGAGGGA 1789 Query 6259 AAGAACGAGAATTAAAATTGGCCGGCAGAtttttttCTCTTATGTCCTGGAAGTTGAGAG 6318 ||||||||||| | || | ||| |||| ||| | | ||||| ||||| | | | Sbjct 1788 AAGAACGAGAAATGAAGAGGATCGGAAGATATTTCGCCTTAATGTCATGGAAACTCCGTG 1729 Query 6319 AATATTTCGTCATTACGGAGTATTTAATAAAGACACATTTTGTCCCCATGTTTAAGGGAT 6378 | || || || || || |||||| | || |||| ||| ||| || | || ||||| Sbjct 1728 AGTACTTTGTGATCACAGAGTATCTGATCAAGAAGTATTATGTTCCGTTATTCAAGGGGC 1669 Query 6379 TGACAATGGCAGATGATCTAACAGCTGTCATAAAGAAAATGATGGATACCTCATCAGGAC 6438 | |||||||| || |||||||| | || || || || |||||| | ||| || | Sbjct 1668 TAACAATGGCTGACGATCTAACCGAGGTGATGAAAAAGATGATGAACCATTCAGATGGTC 1609 Query 6439 AGGGTTTGGATAATTACGACTCAATTTGCATAGCCAATCACATTGATTATGAGAAGTGGA 6498 | || | | | ||| | | | |||||||| || || || ||||| ||||||| Sbjct 1608 AAGGATGTGCAGACTACACCAGAGTCTGCATAGCGAACCATATAGATTACACCAAGTGGA 1549 Query 6499 ACAATCACCAGCGGA 6513 |||| |||||||||| Sbjct 1548 ACAACCACCAGCGGA 1534 >seq122679 Length=1484 Score = 89.7 bits (98), Expect = 4e-14 Identities = 127/178 (71%), Gaps = 2/178 (1%) Strand=Plus/Plus Query 6461 AATTTGCATAGCCAATCACATTGATTATGAGAAGTGGAACAATCACCAGCGGAAAGAATC 6520 ||||||||||||||| ||| ||| ||| ||||||||||| ||||| || || || || Sbjct 758 AATTTGCATAGCCAACCAC--TGACTATACCAAGTGGAACAACCACCAACGCAAGGAGTC 815 Query 6521 CAATGGTCCTGTTTTTAGGGTAATGGGACAATTCCTTGGCTACCCCAATTTGATTGAACG 6580 ||| ||||| | || ||||||| ||| | || || ||||| || | || Sbjct 816 TAATAAGTATGTTTACACTGTCATGGGACGATTTTTAGGATATCCCAAAGGCATCGCTCG 875 Query 6581 CACCCATGAATTCTTTGAAAAAAGTCTGATTTACTATAATGGACGTCCAGACCTGATG 6638 |||||||| || ||| | |||||||| || || ||| ||||| || || ||||| Sbjct 876 AACCCATGAGTTTTTTTAGAAAAGTCTCATATATTATGTGGGACGGCCGGATTTGATG 933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35194154798016