Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_025356.1 Length=11097 Score E Sequences producing significant alignments: (Bits) Value seq263735 215 4e-52 seq42553 143 2e-30 seq46121 141 7e-30 seq36779 123 2e-24 seq53828 109 4e-20 seq110009 104 2e-18 seq97353 96.9 2e-16 >seq263735 Length=2160 Score = 215 bits (238), Expect = 4e-52 Identities = 409/600 (68%), Gaps = 4/600 (1%) Strand=Plus/Plus Query 6304 ATAGGACTAAAAGGGAAAGAAAGAGAATTGAAAATCGCCGGAAGATTCTTTTCCCTGATG 6363 |||||||| ||| ||||| | ||| |||| | || ||||| ||| || | ||| Sbjct 1219 ATAGGACTCCGAGGTAAAGAGCGGGAAATGAAGAGAATAGGTAGATTTTTTACCTTAATG 1278 Query 6364 TCCTGGCAACTGAGAGAATATTTTGTCATCACCGAGTACTTAATAAAGACTCATTAT-GT 6422 || ||| | | || |||||||| | ||||| | |||||||| | | || | || Sbjct 1279 TCATGGGCCTTACGTGAGTATTTTGTGTTGACCGAATTTTTAATAAAAAAACTTTTTTGT 1338 Query 6423 ACCATTATTCAAAGGACTCACAATGGCGGATGATCTGACATCAGTTGTAAAGAAGATGTT 6482 || ||||| | |||| || ||||| |||||||| || ||| ||||||||| | Sbjct 1339 CCCGTTATTTGATAGACTAACCATGGCTGATGATCTCACTGAAGTAACTAAGAAGATGAT 1398 Query 6483 GGACAACACGAATGGACAAGGACTGGATGATTATTCATCGATTTGCATCGCCAATCACAT 6542 | | || | |||| |||||| ||||||||| || || || || || ||||| Sbjct 1399 GAATAATTCTGATGGTCAAGGATGCCCAGATTATTCACGCATCTGTATTGCTAACCACAT 1458 Query 6543 CGACTATGAGAAGTGGAATAATCATCAGAGAAAAGAATCCAATGGGCCTGTGTTTCGAGT 6602 || ||| || ||||||||||| |||||||| || ||||| | ||| ||| |||| Sbjct 1459 TGATTATACAAAATGGAATAATCACCAGAGAAAGGAGTCCAACAAGTATGTATTTAGAGT 1518 Query 6603 CATGGGGCAGTTTTTGGGTTATCCCAGATTGTTTGAAAGAACCCATGAGTTTTTTGAATC 6662 ||||| || ||||| || || || || || | ||| | || ||||| ||||||||| Sbjct 1519 GATGGGTCAATTTTTAGGATACCCAAGTCTGATAGAACGGACTCATGAATTTTTTGAAAA 1578 Query 6663 AAGCCTCATTTACTACAACGGCAGACCAGACTTGATGGATGTAAGAGGAGATTCGTTG-- 6720 |||||| ||||| ||| | | | || || || |||| ||||||| | | || Sbjct 1579 AAGCCTTATTTATTACGTAGCCCGTCCGGATTTAATGGTCGTAAGAGACGGAACCCTGCA 1638 Query 6721 -ATCAATACCACTGAAAAGTTGGTGTGTTGGGAGGGTCAGGCGGGAGGATTGGAAGGATT 6779 | ||| ||| | ||| || | ||||||||| |||| ||| || || |||| ||| | Sbjct 1639 AAACAAAACCCCAGAACAGATCGTGTGTTGGAAGGGCCAGAAAGGTGGGCTGGAGGGACT 1698 Query 6780 GAGACAAAAAGGATGGAGTGTGCTGAATCTGTTAGTCATAAACAGGGAATCATCCATAAG 6839 ||||| ||||||||||| | | ||| || | || | || | || | | Sbjct 1699 CAGACAGAAAGGATGGAGCATTGTAAATTATTTGATTCTAGAAGAAGAGGCCTCAAGAGT 1758 Query 6840 AAATACAATCGTGAAAGTACTAGCGCAGGGAGACAATCAGGTCATCTGTACTCAATATAA 6899 |||||| | || || || |||| || ||||| |||||||| || |||||||| ||||| Sbjct 1759 AAATACCAAAGTAAATGTTTTAGCCCAAGGAGATAATCAGGTTATTTGTACTCATTATAA 1818 >seq42553 Length=2057 Score = 143 bits (158), Expect = 2e-30 Identities = 185/255 (73%), Gaps = 14/255 (5%) Strand=Plus/Minus Query 6316 GGGAAAGAAAGAGAATTGAAAATCGCCGGAAGATTCTTTTCCCTGATGTCCTGGCAACTG 6375 ||||| || ||||| |||||| | |||||||| ||| | || ||||||||| | || Sbjct 605 GGGAAGGAGAGAGAGATGAAAAGGGTTGGAAGATTTTTTGCTCTCATGTCCTGGGATCTT 546 Query 6376 AGAGAATATTTTGTCATCACCGAGTACTTAAT-AAAGACTCATTATGTACCATTATTCAA 6434 |||| || |||||| |||| |||||| | || ||||| || | || || || ||||| Sbjct 545 CGAGAGTACTTTGTCCTCACAGAGTACCTCATCAAAGAG-CACTTCGTCCCCTTGTTCAA 487 Query 6435 AGGACTCACAATGGCGGATGATCTGACATCAGTTGTAAAGAAGATGTTGGACAACACGAA 6494 |||| | |||||||| || |||||||| ||| || ||||||| || |||| | || Sbjct 486 AGGATTAACAATGGCCGACGATCTGACTGAGGTTACAAGGAAGATGATGAACAATTCAAA 427 Query 6495 TGGACAAGGACTGGATGATTATTCATCGATTTGCATCGCCAATCACATCGACTATGAGAA 6554 |||||||| |||| ||| ||||| || || |||||||| ||| || Sbjct 426 CGGACAAGG------------TTCAAAGATCTGCATAGCAAAACACATCGATTATACAAA 379 Query 6555 GTGGAATAATCATCA 6569 ||||||||||||||| Sbjct 378 GTGGAATAATCATCA 364 >seq46121 Length=3043 Score = 141 bits (156), Expect = 7e-30 Identities = 353/528 (67%), Gaps = 6/528 (1%) Strand=Plus/Minus Query 6373 CTGAGAGAATATTTTGTCATCACCGAGTACTTAAT-AAAGACTCATTATGTACCATTATT 6431 |||||||||||||| ||| | || || ||| |||| ||||| |||| || ||| | || Sbjct 1347 CTGAGAGAATATTTCGTCGTTACTGAATACCTAATCAAAGAA-CATTTCGTTCCACTGTT 1289 Query 6432 CAAAGGACTCACAATGGCGGATGATCTGACATCAGTTGTAAAGAAGATGTTGGACAACAC 6491 | |||| ||||| ||||||||||| || || || | |||| ||||| | || | Sbjct 1288 CCAAGGCCTCACTATGGCGGATGACCTCACCGAGGTGACACGGAAGGTGTTGAATAATTC 1229 Query 6492 GAATGGACAAGGACTGGATGATTATTCATCGATTTGCATCGCCAATCACATCGACTATGA 6551 |||| |||||| ||||||||| |||||||| || || ||||| ||||| || Sbjct 1228 AGATGGGCAAGGATGTCCAGATTATTCAAGAATTTGCATTGCTAACCACATAGACTACGA 1169 Query 6552 GAAGTGGAATAATCATCAGAGAAAAGAATCCAATGGGCCTGTGTTTCGAGTCATGGGGCA 6611 || ||||| || ||||| | ||||||||||| | ||| || | ||| ||||| || Sbjct 1168 AAAATGGAACAACCATCAACGGAAAGAATCCAACCAACATGTCTTCCAAGTGATGGGCCA 1109 Query 6612 GTTTTTGGGTTATCCCAGAT-TGTTTGAAAGAACCCATGAGTTTTTTGAATCAAGCCTCA 6670 ||| || || |||| || | | || || ||||| || |||||| || || Sbjct 1108 GTTCCAAGGATA-CCCAAATCTAATCACCAGGACTCATGACTTCTTTGAAAAGAGTCTGG 1050 Query 6671 TTTACTACAACGGCAGACCAGACTTGATGGATGTAAGAGGAGATTCGTTGATCAAT-ACC 6729 | || || || | ||||||||| ||| | ||| | | || |||||| | Sbjct 1049 TGTATTATGTTGGAATACCAGACTTAATGCTCCAACGAGATGGGACTTTAATCAATAAGG 990 Query 6730 ACTGAAAAGTTGGTGTGTTGGGAGGGTCAGGCGGGAGGATTGGAAGGATTGAGACAAAAA 6789 | || | ||| || || ||| | || || | |||| ||||||| | || |||| Sbjct 989 AAAGACACGTT-GTCTGCTGGAACGGCCAATCAGGAGATCTGGAAGGCCTCAGGTAAAAG 931 Query 6790 GGATGGAGTGTGCTGAATCTGTTAGTCATAAACAGGGAATCATCCATAAGAAATACAATC 6849 || |||||||| || ||| || || || | || |||||| | ||||| | Sbjct 930 GGCTGGAGTGTTCTTAATTATCTAATCCTAGAAGACGAGGCATCCAAGAAGAATACTAAA 871 Query 6850 GTGAAAGTACTAGCGCAGGGAGACAATCAGGTCATCTGTACTCAATAT 6897 || || || || || || ||||| | || || ||||| | ||| ||| Sbjct 870 GTAAATGTCCTTGCTCAAGGAGATATCCAAGTAATCTGCAATCACTAT 823 >seq36779 Length=13892 Score = 123 bits (136), Expect = 2e-24 Identities = 386/599 (64%), Gaps = 38/599 (6%) Strand=Plus/Plus Query 6304 ATAGGACTAAAAGGGAAAGAAAGAGAATTGAAAATCGCCGGAAGATTCTTTTCCCTGATG 6363 || ||||| | |||||||| || || |||||| || || | || || | || ||| Sbjct 5391 ATTGGACTCAGGGGGAAAGAGAGGGAGATGAAAAGAGCGGGTCGGTTTTTAGCACTTATG 5450 Query 6364 TCCTGGCAACTGAGAGAATATTTTGTCATCACCGAGTACTTAATAAAGACTCATTATGTA 6423 |||||| | || ||||||| || || || || || || | || ||| || | ||| Sbjct 5451 TCCTGGGAGTTGCGAGAATACTTCGTGATTACAGAATATCTTATCAAGGAGCACTTTGTC 5510 Query 6424 CCATTATTCAAAGGACTCACAATGGCGGATGATCTGACATCAGTTGTAAAGAAGATGTTG 6483 |||||||| || || || || ||||| ||||| ||| | Sbjct 5511 CCATTATTTAAGGGTCTGACTATGGCCGATGAC------TCAAT---------------- 5548 Query 6484 GACAACACGAATGGACAAGGACTGGATGATTATTCATCGATTTGCATCGCCAATCACATC 6543 ||| | |||||||||| || ||| | || || | || ||||| ||| Sbjct 5549 ---AACTCCGATGGACAAGGGTGTCCAGACTATACTAAAATCTGTGTAGCGAATCATATC 5605 Query 6544 GACTATGAGAAGTGGAATAATCATCAGAGAAAAGAATCCAATGGGCCTGTGTTTCGAGTC 6603 |||||||| || ||||| || ||| | |||||| ||| || || ||| Sbjct 5606 GACTATGAAAAATGGAACAACCATAAC---------TCCAATCAATATGTATTCCGTGTC 5656 Query 6604 ATGGGGCAGTTTTTGGGTTATCCCAGAT-TGTTTGAAAGAACCCATGAGTTTTTTGAATC 6662 ||||| |||||||||||||| ||| || | ||||| | |||||||| || ||||| Sbjct 5657 ATGGGCCAGTTTTTGGGTTA-CCCTCATCTAATTGAACGGACCCATGAATTCTTTGAGAA 5715 Query 6663 AAGCCTCATTTACTACAACGGCAGACCAGACTTGATGGATGTAAGAGGAGATTCGTTGAT 6722 ||| | ||||| ||| ||| | || || ||||| ||||| ||| | || | Sbjct 5716 AAGTTTAATTTATTACGTCGGTCGTCCCGATCTGATGATCCAAAGAGAAGACACCTTCCT 5775 Query 6723 CAATACCACTGAAAAGTTGGTGTGTTGGGAGGGTCAGGCGGGAGGATTGGAAGGATTGAG 6782 ||| | | || | || | || || ||| | || ||||| || || |||| || | | Sbjct 5776 CAACAAGATTGGAGAGATTGTTTGCTGGAACGGACAGGCTGGTGGTCTGGAGGGGCTCTG 5835 Query 6783 ACAAAAAGGATGGAGTGTGCTGAA-TCTGTTAGTCATAAACAGGGAATCATCCATAAGAA 6841 || || |||||||| || ||||| | | | | || | | || ||| | | || Sbjct 5836 CCAGAAGGGATGGAGCGTTCTGAATTATCTCATTC-TGGATGATGAGTCAGAGAAGAAAA 5894 Query 6842 ATACAATCGTGAAAGTACTAGCGCAGGGAGACAATCAGGTCATCTGTACTCAATATAAA 6900 |||| | ||||| || || || || ||||| ||||||||||| ||||| || || ||| Sbjct 5895 ATACCAATGTGAACGTCCTGGCCCAAGGAGATAATCAGGTCATTTGTACCCACTACAAA 5953 >seq53828 Length=2951 Score = 109 bits (120), Expect = 4e-20 Identities = 253/375 (67%), Gaps = 10/375 (3%) Strand=Plus/Minus Query 8171 CTCTTGCCGCTTATCTGGGATCGAAAACTTCTGAAACGACCTCAATCCTTCAGCCTTGGG 8230 ||||| | |||||||||||||| | ||| || || | ||| || | || || |||| Sbjct 1123 CTCTTCCAGCTTATCTGGGATCAAGAACATCAGAGAGAACCAATATAATGCAACCATGGG 1064 Query 8231 AAAAAGACAGCAAAGTACCAATAATCAAACGGGCGACAAAACTGAGAGACAGCATATCCT 8290 |||| ||| || || || | ||| | | || || | ||| ||||| ||||||| Sbjct 1063 AAAAGTACACAAATGTTCCGCTTATCGCAAGAGCCACCAGACTAAGAGATTCCATATCCG 1004 Query 8291 GGTTTGTTCAACCCGATTCAAAATTGGCCAAAAGTAT--ACAACAAAATCTGAAAGCATT 8348 |||| || | ||| || || ||||| || || || || ||| | || | Sbjct 1003 GGTTCATTGACATCGACTCGAATTTGGCTAACAGCATTATGGACCTGATC--CAGTCACT 946 Query 8349 GACAGGTGAAGATTGGGAAGAAGACAT-ACAAGGATTCAAGAGGACAGGATCCGCTTTAC 8407 ||||||||| || ||| |||||||||| || | ||||| || ||||| || || | | Sbjct 945 GACAGGTGAGGACTGGAAAGAAGACATCACCA-ACTTCAAAAGAACAGGGTCAGCCCTTC 887 Query 8408 ATCGATTTACAACATCTCGAA--TCAGCAATGGAGGATTCAGTGCCCAAAGTCCGGCTAA 8465 || ||||| || | | || | ||| || ||||| | || ||||||| ||| || || Sbjct 886 ATAGATTTTCATCTGCACGGATGTCATCA--GGAGGGTACACAGCCCAAAATCCCGCGAA 829 Query 8466 GTTGACTCGGATTATGACTACAACAGACACAATGAGAGACTTAGGAGATCAGAACTATGA 8525 |||| | |||| | | || || || | ||| ||| || |||| || ||||| Sbjct 828 GTTGTCCTGGATGACCAGCACTACGGATATTATGGCAGAGTTGGGAGGAGTAAATTATGA 769 Query 8526 TTTCATGTTCCAAGC 8540 ||||||||| ||||| Sbjct 768 TTTCATGTTTCAAGC 754 >seq110009 Length=642 Score = 104 bits (114), Expect = 2e-18 Identities = 167/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 6302 TAATAGGACTAAAAGGGAAAGAAAGAGAATTGAAAATCGCCGGAAGATTCTTTTCCCTGA 6361 |||||||||| || ||||| | || |||||| ||||||||||| |||| | Sbjct 378 TAATAGGACTCCGTGGTAAAGAGCGCGAGATGAAAAGGATAGGAAGATTCTTCGCCCTAA 437 Query 6362 TGTCCTGGCAACTGAGAGAATATTTTGTCATCACCGAGTACTTAATAAAGACTCATTATG 6421 |||||||| || ||||||||||||| | ||||| | || ||||| | || || Sbjct 438 TGTCCTGGGCCTTGCGAGAATATTTTGTTTTGACCGAATTATTGATAAAAAACTTTTTTG 497 Query 6422 TACCATTATTCAAAGGACTCACAATGGCGGATGATCTGACATCAGTTGTAAAGAAGATGT 6481 | || ||||| | ||||| |||||||| |||||||| || || ||||||||| Sbjct 498 TTCCTTTATTTGATGGACTAACAATGGCCGATGATCTTACTGAGGTCACGAAGAAGATGA 557 Query 6482 TGGACAACACGAATGGACAAGGACTGGATGATTATTCATCGATTTGCATCGCCAATCACA 6541 || ||||| | |||| ||||| ||||| || || || || |||||||||| Sbjct 558 TGAACAACTCCGATGGTCAAGGGTGCCCAGATTACTCGCGTATCTGTATAGCCAATCACA 617 >seq97353 Length=1375 Score = 96.9 bits (106), Expect = 2e-16 Identities = 223/333 (67%), Gaps = 5/333 (2%) Strand=Plus/Plus Query 8214 AATCCTTCAGCCTTGGGAAAAAGACAGCAAAGTACCAATAATCAAACGGGCGACAAAACT 8273 |||| | ||||| ||||||||| ||| || || | | || | |||| | ||| Sbjct 853 AATCATGCAGCCATGGGAAAAATACACATCTGTTCCTGTGCTGAAGAGAACGACTAGACT 912 Query 8274 GAGAGACAGCATATCCTGGTTTGTTCAACCCGATTCAAAATTGGCCAAAAGTATACAACA 8333 | || ||| || ||||||||| | || |||||||| |||| ||||| ||| | Sbjct 913 TTGGGATGCCATTTCATGGTTTGTTGAGCCAGATTCAAATCTGGCAAAAAGCATAACAGG 972 Query 8334 AAATCTGAAAGCATTGACAGGTGAAGATTGGGAAGAAGACATACAAGGATTCAAGAGGAC 8393 ||| | | ||||||| || |||| || || || | | ||||||||||| Sbjct 973 GCTTCTATATTCTCTGACAGGAGAGAATTGAAGCGAGGATATTCGAAATTTCAAGAGGAC 1032 Query 8394 AGGATCCGCTTTACATCGATTTACAACATCTCGAA--TCAGCAATGGAGGATTCAGTGCC 8451 |||||| || || || ||||||| || ||||| | ||| || | | |||| || Sbjct 1033 AGGATCTGCATTGCAGCGATTTA-TACCTCTCGGATGTCATCAGGCGGGTATTCCGT--A 1089 Query 8452 CAAAGTCCGGCTAAGTTGACTCGGATTATGACTACAACAGACACAATGAGAGACTTAGGA 8511 |||| || || || ||||| |||| | | || || ||||| |||| ||| | || Sbjct 1090 CAAAACCCTGCAAAATTGACCTGGATGACTAGTAACACTGACACTATGACAGAAGTCGGT 1149 Query 8512 GATCAGAACTATGATTTCATGTTCCAAGCCGGC 8544 | || |||||||| ||||||| ||| ||| || Sbjct 1150 GGGCAAAACTATGACTTCATGTACCAGGCCAGC 1182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35280274263264