Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_025358.1 Length=15024 Score E Sequences producing significant alignments: (Bits) Value seq263735 219 4e-53 seq22788 105 6e-19 seq110009 80.6 3e-11 >seq263735 Length=2160 Score = 219 bits (242), Expect = 4e-53 Identities = 417/600 (70%), Gaps = 22/600 (4%) Strand=Plus/Plus Query 10163 AGCTAAGGAACGAGAACTTAA-AGAAGAAGGTAGATTCTTTTCTTTAATGTCTTACGAAT 10221 || ||| || || ||| | || |||| | |||||||| ||| | |||||||| | | | Sbjct 1230 AGGTAAAGAGCGGGAAATGAAGAGAATA-GGTAGATTTTTTACCTTAATGTCATGGGCCT 1288 Query 10222 TGAGGGATTATTTTGTATCTACTGAATACCTGATCAAGAAA-TATTTTGTACCCTTATTT 10280 | | || |||||||| | || |||| | || || ||| | |||||| || |||||| Sbjct 1289 TACGTGAGTATTTTGTGTTGACCGAATTTTTAATAAAAAAACTTTTTTGTCCCGTTATTT 1348 Query 10281 GAAGGTCTAACAATGGCTGATGATTTGAATACAGTAATTAAGAAGATGTTGGATGTCTCA 10340 || | ||||| |||||||||||| | | | ||||| |||||||||| || || || Sbjct 1349 GATAGACTAACCATGGCTGATGATCTCACTGAAGTAACTAAGAAGATGATGAATAATTCT 1408 Query 10341 AGCGGCCAGGGAACCAGAGAATATGATTATATAACTATTGCAAACAACATCGATTATGAA 10400 || || ||| | ||| ||| || |||||| ||| |||| |||||| | Sbjct 1409 GATGGTCAAGGATGCCCAGATTATTCACGCATCTGTATTGCTAACCACATTGATTATACA 1468 Query 10401 AAATGGAATAATTATCAAAGGATAGAGTCTAACGGTCCAGTATTTACTGTCATGGGAAAA 10460 |||||||||||| | || || | ||||| ||| ||||||| || ||||| || Sbjct 1469 AAATGGAATAATCACCAGAGAAAGGAGTCCAACAAGTATGTATTTAGAGTGATGGGTCAA 1528 Query 10461 TTTTTGGGGCTACCTAA-TCTCTTTACAAGAACTCATGAATTCTTCCAAAAAAGCTTGAT 10519 ||||| || |||| || ||| | | | ||||||||||| || |||||||| | || Sbjct 1529 TTTTT-AGGATACCCAAGTCTGATAGAACGGACTCATGAATTTTTTGAAAAAAGCCTTAT 1587 Query 10520 TTATTA--TAACCAAAGGCCTGATTTAATGATGGTGAGAGGTAATGAA---TGTCTCAAC 10574 |||||| || || | || ||||||||| | || |||| | ||| || | ||| Sbjct 1588 TTATTACGTAGCC--CGTCCGGATTTAATGGTCGTAAGAG--ACGGAACCCTG-CAAAAC 1642 Query 10575 AAATCTGGAGTA---AAAGTATGTTGGGAGGGCCAAAAAGGGGGTTTGGAGGGACTAAGA 10631 ||| | || | | || |||||| ||||||| ||||| || |||||||||| ||| Sbjct 1643 AAAACCCCAGAACAGATCGTGTGTTGGAAGGGCCAGAAAGGTGGGCTGGAGGGACTCAGA 1702 Query 10632 CAAAAAGGATGGAGTATTTTAAATTATTTGATGATTGA--AAGAGAGAGCAGGATTCGAA 10689 || ||||||||||| ||| ||||||||||||| | || ||||| || || | || Sbjct 1703 CAGAAAGGATGGAGCATTGTAAATTATTTGATTCTAGAAGAAGAGGCCTCAAGAGT--AA 1760 Query 10690 ATACAAAGGTCAAAATATTGGCACAGGGGGATAATCAAACAATTAGTATGTGTTATAAGA 10749 |||| || || || | || || || || |||||||| ||| ||| |||||||| Sbjct 1761 ATACCAAAGTAAATGTTTTAGCCCAAGGAGATAATCAGGTTATTTGTACTCATTATAAGA 1820 >seq22788 Length=2006 Score = 105 bits (116), Expect = 6e-19 Identities = 183/259 (71%), Gaps = 8/259 (3%) Strand=Plus/Minus Query 10050 ACTAAAAGGGTACTACAGACATTACTTGAAAAGCCAGCTACGAATTGGCCTGAATTTCTT 10109 ||||||||||| || | || || | || | || ||||||||||||| || || ||| Sbjct 1906 ACTAAAAGGGTCCTTGACACCCTAATCGAGACGCAAGCTACGAATTGGAAGGAGTTCCTT 1847 Query 10110 AAAGCAATTAATGATCACGGACTAGATTGGGAAA--AATTGGTGATTGGGTTGAAAGCTA 10167 ||| || ||||| |||| |||| | ||| | ||||| || || | | || | Sbjct 1846 CAAGACATCAATGACAACGGCTTAGAC--GAAAATTACTTGGTTATCGGACTAAGAGGGA 1789 Query 10168 AGGAACGAGAACTTAAAGAAGAA-GGTAGATTCTTTTCTTTAATGTCTTACGAATTGAGG 10226 | ||||||||| | || || || || |||| || | |||||||| | || | | Sbjct 1788 AAGAACGAGAAATGAA-GAGGATCGGAAGATATTTCGCCTTAATGTCATGGAAACTCCGT 1730 Query 10227 GATTATTTTGT-ATCTACTGAATACCTGATCAAGAAATATTTTGTACCCTTATTTGAAGG 10285 || || ||||| ||| || || || ||||||||||| |||| ||| || ||||| | || Sbjct 1729 GAGTACTTTGTGATC-ACAGAGTATCTGATCAAGAAGTATTATGTTCCGTTATTCAAGGG 1671 Query 10286 TCTAACAATGGCTGATGAT 10304 |||||||||||||| ||| Sbjct 1670 GCTAACAATGGCTGACGAT 1652 >seq110009 Length=642 Score = 80.6 bits (88), Expect = 3e-11 Identities = 103/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 10190 AGGTAGATTCTTTTCTTTAATGTCTTACGAATTGAGGGATTATTTTGTATCTACTGAATA 10249 ||| |||||||| | ||||||| | | ||| | || |||||||| | || |||| Sbjct 418 AGGAAGATTCTTCGCCCTAATGTCCTGGGCCTTGCGAGAATATTTTGTTTTGACCGAATT 477 Query 10250 CCTGATCAAGAAATATTTTGTACCCTTATTTGAAGGTCTAACAATGGCTGATGATTTGAA 10309 |||| || || | |||||| || |||||||| || ||||||||||| |||||| | | Sbjct 478 ATTGATAAAAAACTTTTTTGTTCCTTTATTTGATGGACTAACAATGGCCGATGATCTTAC 537 Query 10310 TACAGTAATTAAGAAGATGTTG 10331 | || | ||||||||| || Sbjct 538 TGAGGTCACGAAGAAGATGATG 559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 47798356944296