Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08]
288,616 sequences; 398,147,594 total letters
Query= NC_025359.1
Length=11526
Score E
Sequences producing significant alignments: (Bits) Value
seq46121 93.3 3e-15
seq53828 82.4 6e-12
>seq46121
Length=3043
Score = 93.3 bits (102), Expect = 3e-15
Identities = 198/296 (67%), Gaps = 0/296 (0%)
Strand=Plus/Minus
Query 6732 TATTTTGTGATAACTGAGTTCTTAATCAAGAAATTCTACGTGCCGATGTTCAAAGGACTG 6791
||||| || | ||||| | | ||||||| || | ||| || ||||| |||| ||
Sbjct 1338 TATTTCGTCGTTACTGAATACCTAATCAAAGAACATTTCGTTCCACTGTTCCAAGGCCTC 1279
Query 6792 ACTATGGCGGATGACCTGAACACGGTAACTAAAAAACTCCTTAAAGCAACAGAAGGGCAA 6851
||||||||||||||||| | | ||| || || | | || |||| ||||||
Sbjct 1278 ACTATGGCGGATGACCTCACCGAGGTGACACGGAAGGTGTTGAATAATTCAGATGGGCAA 1219
Query 6852 GGAAGAGACGATTATGACGAAATTTACATCGCCAACTCGTTGGATTACGACAAATGGAAC 6911
||| | |||||| ||||| ||| || ||| | || ||||| |||||||||
Sbjct 1218 GGATGTCCAGATTATTCAAGAATTTGCATTGCTAACCACATAGACTACGAAAAATGGAAC 1159
Query 6912 AACAACCAACGCTATGAGTCTAATGAACATGTATTCAGAGTTATGGGGAAATTTATGGGA 6971
||| | ||||| | || || || ||||||| ||| ||| ||||| | || |||
Sbjct 1158 AACCATCAACGGAAAGAATCCAACCAACATGTCTTCCAAGTGATGGGCCAGTTCCAAGGA 1099
Query 6972 TTACCGGAGATATTCGCCATGACCCACAAGTTTTTTCAACAGTCTCTAGTGTATTA 7027
| || | || || ||| ||| || | || ||| || || ||| ||||||||
Sbjct 1098 TACCCAAATCTAATCACCAGGACTCATGACTTCTTTGAAAAGAGTCTGGTGTATTA 1043
>seq53828
Length=2951
Score = 82.4 bits (90), Expect = 6e-12
Identities = 109/150 (73%), Gaps = 10/150 (7%)
Strand=Plus/Minus
Query 7094 GGTTTGCTGGAATGGACAACAGGGAGGGTTCGAAGGATTAAGACAGAAAGGCTGGAGTGT 7153
|||||||||||||||||| ||||||| | |||||||| ||||| ||||| |||||| |
Sbjct 2561 GGTTTGCTGGAATGGACAGAAGGGAGGACTGGAAGGATTCAGACAAAAAGGGTGGAGTAT 2502
Query 7154 GGTCAATTATCTCATCTTGAGAAGAGAAATCATGACTCGA-----AACACGAGTACTATG 7208
|| ||||| | || || ||||||| | || ||||| ||||||| ||
Sbjct 2501 TGTAAATTACTTAATATT-AGAAGAGTAGTC----CTCGAAAGTTAACACGAAAGTTAAT 2447
Query 7209 ATATTAGCACAAGGAGATAATCAAATAATC 7238
| || || || || ||||||||| | |||
Sbjct 2446 GTTTTGGCTCAGGGGGATAATCAAGTCATC 2417
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 36648616877760
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |