Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_025362.1 Length=12240 Score E Sequences producing significant alignments: (Bits) Value seq263735 145 6e-31 seq46121 116 3e-22 seq250369 109 4e-20 >seq263735 Length=2160 Score = 145 bits (160), Expect = 6e-31 Identities = 305/449 (68%), Gaps = 7/449 (2%) Strand=Plus/Plus Query 7369 CACCTGCAACAGATTGGAAGAGTTTCTTCCAAAAAGTCAATGATATAGGAATTCCTGACG 7428 ||||||| ||| ||||||| || || || | || ||||| | || | || || | Sbjct 1148 CACCTGCTACAAATTGGAAACAATTTTTGCAGGAGGTTAATGACAATGGCCTGCCCGATG 1207 Query 7429 ATGCATTGATTATTGGTTTGAAAGCAAAAGAAAGAGAAATGAAACGAGTAGGAAGAtttt 7488 | | | |||| || | || ||||| | |||||||| || |||| ||||||| Sbjct 1208 AGTCTCTAGTTATAGGACTCCGAGGTAAAGAGCGGGAAATGAAGAGAATAGGTAGATTTT 1267 Query 7489 tttCACTTATGTCTTGGGAACTGAGGGAGTATTTTGTATCTACTGAATACTTGATTAAGA 7548 || | | ||||| |||| | | ||||||||||| | || |||| || || || | Sbjct 1268 TTACCTTAATGTCATGGGCCTTACGTGAGTATTTTGTGTTGACCGAATTTTTAATAAAAA 1327 Query 7549 AGCATTTT-GTACCATTGTTTAAAGGCTTGACTATGGCTGATGGATTGA-TGACGGTAAC 7606 | | |||| || || || ||| | | | || |||||||||| | | ||| | |||| Sbjct 1328 AACTTTTTTGTCCCGTTATTTGATAGACTAACCATGGCTGATGATCTCACTGAAG-TAAC 1386 Query 7607 TAAGAAAATGTTGGAGTCATCAATGGGACAGGGGAATCCTGATTATGA--GACTGTGTCC 7664 |||||| ||| || | || || || || || |||||| | | ||| Sbjct 1387 TAAGAAGATGATGAATAATTCTGATGGTCAAGGATGCCCAGATTATTCACGCATCTGT-- 1444 Query 7665 ATTGCTAACCATGTCGATTATGAGAAGTGGAACAACCACCAAAGAAGATTGTCAAATCAG 7724 ||||||||||| | |||||| || ||||| || ||||| |||| ||| || || Sbjct 1445 ATTGCTAACCACATTGATTATACAAAATGGAATAATCACCAGAGAAAGGAGTCCAACAAG 1504 Query 7725 GCAGTCTTTAGAGTCATGGGACAATTTTTAGGTTACCCAAATTTGATAAGTCGCACCCAT 7784 || |||||||| ||||| ||||||||||| ||||||| | ||||| || || ||| Sbjct 1505 TATGTATTTAGAGTGATGGGTCAATTTTTAGGATACCCAAGTCTGATAGAACGGACTCAT 1564 Query 7785 GAATTTTTTGAGAAAAGCTGGATCTATTA 7813 ||||||||||| |||||| || ||||| Sbjct 1565 GAATTTTTTGAAAAAAGCCTTATTTATTA 1593 >seq46121 Length=3043 Score = 116 bits (128), Expect = 3e-22 Identities = 321/484 (66%), Gaps = 16/484 (3%) Strand=Plus/Minus Query 7343 AAGGGTCTTAAACACAATGTTGAATACACCTGCAACAGATTGGAAGAGTTTCTTCCAAAA 7402 ||| |||||||| || | | | | |||||| |||| ||||| ||| |||| | Sbjct 1507 AAGAGTCTTAAAGACCCTCATAGACAAACCTGCCACAGTCTGGAAAGACTTCCTCCAGAG 1448 Query 7403 AGTCAATGATATAGGAATTCCTGACGATGCATTGATTATTGGTTTGAAAGCAAAAGAAAG 7462 | ||||| ||| ||||||| || | | | || || |||| |||||| | Sbjct 1447 GATTAATGACGAGGGACTTCCTGAAGACTCTCTAGTCATCGGATTGAGGAGAAAAGAGCG 1388 Query 7463 AGAAATGAAACGAGTAGGAAGAttttttt-CACTTATGTCTTGGGAACTGAGGGAGTATT 7521 || |||| || || || | ||||||| | || ||| | ||||| || |||| Sbjct 1387 GGACTTGAAGCGGGTCGGGCGTTTTTTTTGCTCTCATGAC-------CTGAGAGAATATT 1335 Query 7522 TTGTATCTACTGAATACTTGATTAAGAAGCATTTTGTACCATTGTTTAAAGGCTTGACTA 7581 | || |||||||||| | || || | ||||| || ||| |||| ||||| | |||| Sbjct 1334 TCGTCGTTACTGAATACCTAATCAAAGAACATTTCGTTCCACTGTTCCAAGGCCTCACTA 1275 Query 7582 TGGCTGATGGATTGATGACGGTAACTAAGAAAATGTTGGAGTCATCA-ATGGGACAGGGG 7640 |||| |||| | | ||| || ||| ||||| | ||| ||||| || || Sbjct 1274 TGGCGGATGACCTCACCGAGGTGACACGGAAGGTGTTGAATAATTCAGATGGG-CAAGGA 1216 Query 7641 AATCCTGATTATG--AGACTGTGTCCATTGCTAACCATGTCGATTATGAGAAGTGGAACA 7698 ||| |||||| ||| | || |||||||||||| | || || || || ||||||| Sbjct 1215 TGTCCAGATTATTCAAGAATTTG--CATTGCTAACCACATAGACTACGAAAAATGGAACA 1158 Query 7699 ACCACCAAAGAAGATTGTCAAATCAGGCAGTCTTTAGAGTCATGGGACAATTTTTAGGTT 7758 |||| ||| | | | || || || ||||| ||| ||||| || || ||| | Sbjct 1157 ACCATCAACGGAAAGAATCCAACCAACATGTCTTCCAAGTGATGGGCCAGTTCCAAGGAT 1098 Query 7759 ACCCAAATTTGATAAGTCGCACCCATGAATTTTTTGAGAAAAG-CTGGATCTATTATGCT 7817 |||||||| | || | | || ||||| || ||||| || || |||| | ||||||| | Sbjct 1097 ACCCAAATCTAATCACCAGGACTCATGACTTCTTTGAAAAGAGTCTGG-TGTATTATGTT 1039 Query 7818 GGAA 7821 |||| Sbjct 1038 GGAA 1035 >seq250369 Length=726 Score = 109 bits (120), Expect = 4e-20 Identities = 262/396 (66%), Gaps = 14/396 (4%) Strand=Plus/Minus Query 7404 GTCAATGATATAGGAATTCCTGACGATGCATTGATTATTGGTTTGAAAGCAAAAGAAAGA 7463 ||||||||| ||| | || || || | || | ||||| |||| || |||||| || Sbjct 520 GTCAATGATGAAGGTCTCCCCGATGACTCCTTAGTCATTGGGTTGAGAGGAAAAGAGGGA 461 Query 7464 GAAATGAAACGAGTAGGAAGAtttttttCACTTATGTCTTGGGAACTGAGGGAGTATTTT 7523 || ||||| | || ||||||||||| | || ||||||||||| || ||| ||| ||| Sbjct 460 GAGATGAAGAGGGTCGGAAGATTTTTCGCTCTAATGTCTTGGGATCTTCGGGTGTACTTT 401 Query 7524 GTATCTACTGAATACTTGATTAAGAAGCATTTTGTACCATTGTTTAAAGGCTTGACTATG 7583 || || || || | ||||| | || ||||| || | || ||||| ||||| ||| Sbjct 400 GTGCTAACAGAGTATCTCATTAAAGAACACTTTGTCCCCCTATTCAAAGGATTGACAATG 341 Query 7584 GCTGATGGATTGATGACGGTAACTAAGAAAATGTTGGAGTCA-TCAATGGGACAGGGGAA 7642 || ||| ||| || || | ||||||| ||| | || || ||||| Sbjct 340 GCCAATGATCTGACCGAAGTTACCAGGAAAATGAAAAAGTTACTCGGACGGGCAGGGTTG 281 Query 7643 TCCTGATTATGAGACTGTGTCCATTGCTAACCATGTCGATTATGAGAAGTGGAACAACCA 7702 ||| ||||| || | || || || || | ||||||| | |||||||| || || Sbjct 280 TCCCGATTACTCGAAGATCTCTATAGCAAATTACATCGATTACAAAAAGTGGAATAATCA 221 Query 7703 CCAAAGAAGATTGTCAAATCAGGCAGTCTTTAGAGTCATGGGACAATTTTTAGGTTACCC 7762 ||| | | ||| |||||||| |||||||| ||||| || || ||||| Sbjct 220 TCAACGGA------------AGG-AGTCTTTACCGTCATGGGTCAATTCTTGGGCTACCC 174 Query 7763 AAATTTGATAAGTCGCACCCATGAATTTTTTGAGAA 7798 | | || |||| ||||| || |||||||| Sbjct 173 TACCCTCATTGCCTGCACTCATGAGTTCTTTGAGAA 138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 38925998292096