Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_025364.1 Length=11019 Score E Sequences producing significant alignments: (Bits) Value seq263735 183 2e-42 seq46121 143 2e-30 seq22788 122 6e-24 seq53828 82.4 5e-12 >seq263735 Length=2160 Score = 183 bits (202), Expect = 2e-42 Identities = 646/990 (65%), Gaps = 38/990 (4%) Strand=Plus/Plus Query 6107 ACCAGCTACCAACTGGCTAGAATTTCTAGAGGAGATAGATAAAAACGGACTACCTCTAGA 6166 ||| ||||| || ||| | ||||| | ||||| | || | || || || || || Sbjct 1149 ACCTGCTACAAATTGGAAACAATTTTTGCAGGAGGTTAATGACAATGGCCTGCCC---GA 1205 Query 6167 TGATT---TAGTCATCGGCTTAAAAGGCAAGGAAAGAGAATTAAAAATAGCAGGTAGATT 6223 ||| | |||| || || | ||| || || | ||| | || | | ||||||||| Sbjct 1206 TGAGTCTCTAGTTATAGGACTCCGAGGTAAAGAGCGGGAAATGAAGAGAATAGGTAGATT 1265 Query 6224 TTTCTCTCTCATGTCTTGGAAATTGAGGGAATACTTTGTGATCACAGAGTACTTAATTAA 6283 ||| | | ||||| ||| || | || || |||||| | || || | ||||| || Sbjct 1266 TTTTACCTTAATGTCATGGGCCTTACGTGAGTATTTTGTGTTGACCGAATTTTTAATAAA 1325 Query 6284 GACACATTTT-GTGCCTCTATTTCATGGTCTCACCATGGCTGACGACATGACTGCAGTCA 6342 | || |||| || || ||||| || | || ||||||||||| || | |||| ||| | Sbjct 1326 AAAACTTTTTTGTCCCGTTATTTGATAGACTAACCATGGCTGATGATCTCACTGAAGTAA 1385 Query 6343 TCAAAAAGATGTTGGAAAGCTCATCTGGACAAGGTTTGTTAGATTACTCAGCGGTATGCC 6402 || |||||| || | | || ||| ||||| | |||||| ||| | || Sbjct 1386 CTAAGAAGATGATGAATAATTCTGATGGTCAAGGATGCCCAGATTATTCACGCATCTGTA 1445 Query 6403 TGGCCAACCATATAGATTATGAAAAATGGAACAATCACCAGCGAAAATTGTCAAACGGTC 6462 | || ||||| || |||||| ||||||||| ||||||||| |||| ||| ||| Sbjct 1446 TTGCTAACCACATTGATTATACAAAATGGAATAATCACCAGAGAAAGGAGTCCAACAAGT 1505 Query 6463 CTGTCTTCAAGGTCATGGGCCAATTCCTTGGGTTTCCGAATCTAATATACAGAACTCATG 6522 ||| || | || ||||| ||||| | || | || | ||| ||| | | ||||||| Sbjct 1506 ATGTATTTAGAGTGATGGGTCAATTTTTAGGATACCCAAGTCTGATAGAACGGACTCATG 1565 Query 6523 AATTTTTTGAGAAAAGCCTAATATATTACAATGGCAGGCCTGATCTCATGAGAGTCAAAG 6582 |||||||||| |||||||| || |||||| | | | || ||| | ||| || | || Sbjct 1566 AATTTTTTGAAAAAAGCCTTATTTATTACGTAGCCCGTCCGGATTTAATGGTCGTAAGAG 1625 Query 6583 ATGACACTGTTGAAAATGCAGGCACCACTCAG---GTGTGCTGGAATGGGCAGGCAGGAG 6639 | | || | |||| | | | ||| ||||| ||||| || ||| ||| | Sbjct 1626 ACGGAACCCTGCAAAACAAAACCCCAGAACAGATCGTGTGTTGGAAGGGCCAGAAAGGTG 1685 Query 6640 GCTTGGAAGGTCTTCGTCAAAAGGGTTGGAGTATTCTAAATCTATTAGTGATTC---AAA 6696 | |||| || || | || || || ||||| ||| ||||| |||| |||||| || Sbjct 1686 GGCTGGAGGGACTCAGACAGAAAGGATGGAGCATTGTAAAT-TATT--TGATTCTAGAAG 1742 Query 6697 GGGAGGCTAAAATTCGAAATACTGCAGTGAAAGTATTGGCTCAGGGAGACAATCAAGTCA 6756 ||||| || |||||| ||| || || || || || ||||| ||||| || | Sbjct 1743 AAGAGGCCTCAAGAGTAAATACCAAAGTAAATGTTTTAGCCCAAGGAGATAATCAGGTTA 1802 Query 6757 TTTGCACTCAGTATAAGACCAAGCAACACAGGAATGAGGAAGA------GTTAAA--GAT 6808 |||| ||||| |||||| | |||||| ||| || |||| ||||| | Sbjct 1803 TTTGTACTCATTATAAG---AGGCAACA-AGG--CGACCAAGATCGTAGCTTAAACCCAC 1856 Query 6809 GGCT-TTAAATCAAATGAAAGCCAACAATGATGCAATTATGAACGCTATTGAACAGGGAA 6867 || | | ||| | || || || || ||| | ||||| || | | | |||| Sbjct 1857 GGTTGGTCAAT-ATTTGGAA--AAATAACGATATCCTGATGAAAGCGA-TCAGAAGGGCT 1912 Query 6868 CCA-ACAAACTTGGATTGCTTATCAACCAGGATGAAACAATGCAGTCGGCTGACTATTTA 6926 || | ||| | ||| | | || ||| | || || |||||||| | || | |||| Sbjct 1913 GCAGATAAAATAGGACTTATAATAAACGAAGACGAGACAATGCAATAAGCAACTTTTTTA 1972 Query 6927 AATTATGGAAAAGTACCAATTTTTA-GAGGTGTTATAAGAGGATTAGAAACAAAACGATG 6985 |||||||| ||||| | || || || | ||| || ||||||||||||| ||| Sbjct 1973 AATTATGGGAAAGT-CTTGTTCATACTTGGAAATTTAATAGCATTAGAAACAAAAAAATG 2031 Query 6986 GTCTCGGGTAACATGTGTGACTAACGATCAGCTTCCAACTTGTGCTAATTTAATGTCGTC 7045 | ||| ||||| || || || ||||| ||| | || |||| | ||| | |||| || Sbjct 2032 GAGTCGAGTAACTTGCGTCACCAACGACCAGGTCCCCACTTTGGGAAATATTTTGTCTTC 2091 Query 7046 TGTATCCACAAATGCTCTGACAGTGGCACA 7075 || ||| ||| | || || || || || Sbjct 2092 CGTTGTCACCAATTCCCTAACCGTAGCTCA 2121 >seq46121 Length=3043 Score = 143 bits (158), Expect = 2e-30 Identities = 355/529 (67%), Gaps = 10/529 (2%) Strand=Plus/Minus Query 6247 TGAGGGAATACTTTGTGATCACAGAGTACTTAATTAAGACACATTTTGTGCCTCTATTTC 6306 |||| ||||| || || | || || ||| |||| || |||||| || || || || | Sbjct 1346 TGAGAGAATATTTCGTCGTTACTGAATACCTAATCAAAGAACATTTCGTTCCACTGTTCC 1287 Query 6307 ATGGTCTCACCATGGCTGACGACATGACTGCAGTCATCAAAAAGATGTTGGAAAGCTCAT 6366 | || ||||| ||||| || ||| | || | || | ||| ||||| | | ||| Sbjct 1286 AAGGCCTCACTATGGCGGATGACCTCACCGAGGTGACACGGAAGGTGTTGAATAATTCAG 1227 Query 6367 CTGGACAAGGTTTGTTAGATTACTCAGCGGTATGCCTGGCCAACCATATAGATTATGAAA 6426 ||| ||||| | |||||| ||| | ||| | || ||||| ||||| || |||| Sbjct 1226 ATGGGCAAGGATGTCCAGATTATTCAAGAATTTGCATTGCTAACCACATAGACTACGAAA 1167 Query 6427 AATGGAACAATCACCAGCGAAAATTGTCAAACGGTCCTGTCTTCAAGGTCATGGGCCAAT 6486 |||||||||| || || || ||| || ||| | ||||||| | || |||||||| | Sbjct 1166 AATGGAACAACCATCAACGGAAAGAATCCAACCAACATGTCTTCCAAGTGATGGGCCAGT 1107 Query 6487 TCCTTGGGTTTCCGAATCTAATATACAGAACTCATGAATTTTTTGAGAAAAGCCTAATAT 6546 ||| || | || |||||||| ||| |||||||| || ||||| || || || | | Sbjct 1106 TCCAAGGATACCCAAATCTAATCACCAGGACTCATGACTTCTTTGAAAAGAGTCTGGTGT 1047 Query 6547 ATTACAATGGCAGGCCTGATCTCATGAGAGTCAA--AGATGACACTGTTGAAAATGCAGG 6604 |||| ||| | || || | || | ||| ||||| ||| || | | ||| Sbjct 1046 ATTATGTTGGAATACCAGACTTAAT--GCTCCAACGAGATGGGACT-TTAATCAATAAGG 990 Query 6605 CACCACTC-AGGTGTGCTGGAATGGGCAGGCAGGAGGCTTGGAAGGTCTTCGTCAAAAGG 6663 | || | || |||||||| || || |||||| ||||||| || | |||||| Sbjct 989 AAAGACACGTTGTCTGCTGGAACGGCCAATCAGGAGATCTGGAAGGCCTCAGGTAAAAGG 930 Query 6664 GTTGGAGTATTCTAAATCTAT-TAGTGATTCAAAGGGAGGC-TAAAATTCGAAATACTGC 6721 | |||||| |||| ||| ||| || | | || ||||| | || | |||||| Sbjct 929 GCTGGAGTGTTCTTAAT-TATCTAATCCTAGAAGACGAGGCATCCAAGAAG-AATACTAA 872 Query 6722 AGTGAAAGTATTGGCTCAGGGAGACAATCAAGTCATTTGCACTCAGTAT 6770 ||| || || | ||||| ||||| | ||||| || |||| ||| ||| Sbjct 871 AGTAAATGTCCTTGCTCAAGGAGATATCCAAGTAATCTGCAATCACTAT 823 >seq22788 Length=2006 Score = 122 bits (134), Expect = 6e-24 Identities = 192/275 (70%), Gaps = 0/275 (0%) Strand=Plus/Minus Query 6171 TTAGTCATCGGCTTAAAAGGCAAGGAAAGAGAATTAAAAATAGCAGGTAGATTTTTCTCT 6230 || || ||||| ||| ||| || ||| ||||| | || | || |||| |||| | Sbjct 1810 TTGGTTATCGGACTAAGAGGGAAAGAACGAGAAATGAAGAGGATCGGAAGATATTTCGCC 1751 Query 6231 CTCATGTCTTGGAAATTGAGGGAATACTTTGTGATCACAGAGTACTTAATTAAGACACAT 6290 | ||||| |||||| | | || |||||||||||||||||||| | || |||| || Sbjct 1750 TTAATGTCATGGAAACTCCGTGAGTACTTTGTGATCACAGAGTATCTGATCAAGAAGTAT 1691 Query 6291 TTTGTGCCTCTATTTCATGGTCTCACCATGGCTGACGACATGACTGCAGTCATCAAAAAG 6350 | ||| || |||| | || || || ||||||||||| | || | || || |||||| Sbjct 1690 TATGTTCCGTTATTCAAGGGGCTAACAATGGCTGACGATCTAACCGAGGTGATGAAAAAG 1631 Query 6351 ATGTTGGAAAGCTCATCTGGACAAGGTTTGTTAGATTACTCAGCGGTATGCCTGGCCAAC 6410 ||| || | ||| ||| ||||| | ||| ||| | || ||| | || ||| Sbjct 1630 ATGATGAACCATTCAGATGGTCAAGGATGTGCAGACTACACCAGAGTCTGCATAGCGAAC 1571 Query 6411 CATATAGATTATGAAAAATGGAACAATCACCAGCG 6445 ||||||||||| || |||||||| |||||||| Sbjct 1570 CATATAGATTACACCAAGTGGAACAACCACCAGCG 1536 >seq53828 Length=2951 Score = 82.4 bits (90), Expect = 5e-12 Identities = 258/395 (65%), Gaps = 6/395 (2%) Strand=Plus/Minus Query 8052 CCAGCTTATCTTGGATCCAAGACCTCAGAATCAACATCCATCCTTCAGCCATGGGAAAAA 8111 ||||||||||| ||||| | || ||||| ||| || | || ||||||||||| Sbjct 1118 CCAGCTTATCTGGGATCAAGAACATCAGAGAGAACCAATATAATGCAACCATGGGAAAAG 1059 Query 8112 GAAAGTAAAATCCCGATGATACGCA-GAGCAACTAGACTAAGAGACGCAATACACTGGTT 8170 | | || | ||| | || |||| |||| || ||||||||||| | ||| | |||| Sbjct 1058 TACACAAATGTTCCGCTTAT-CGCAAGAGCCACCAGACTAAGAGATTCCATATCCGGGTT 1000 Query 8171 TATAGAGCCTGATTCAAACGTGGCAAAGAGCATTTTAAATAATATAAAGTCTCTGACTGG 8230 || || || || || |||| || |||||| | | || |||| ||||| || Sbjct 999 CATTGACATCGACTCGAATTTGGCTAACAGCATTATGGACCTGATCCAGTCACTGACAGG 940 Query 8231 AGAGGAGTGGGGTGAATCTATTGGAGGATTTCGAAGGACAGGGTCTGCGCTCCATCGCTT 8290 ||||| ||| ||| || || ||| |||||||| || || ||| | || Sbjct 939 TGAGGACTGGAAAGAAGACATCACCAACTTCAAAAGAACAGGGTCAGCCCTTCATAGATT 880 Query 8291 CACAACATCGCGAATGAGTCAT--GGTGGTTTTAGTGCCCAAAGTCCTGCAACCCTGACC 8348 || | | || || ||||| || || | | ||||||| ||| || | || || Sbjct 879 TTCATCTGCACGGAT--GTCATCAGGAGGGTACACAGCCCAAAATCCCGCGAAGTTGTCC 822 Query 8349 AGGATGATGGCCACTACTGACACAATGAGAGACTATTCTGTAGACAATTTTGATTTCATG 8408 |||||| |||||| || | ||| ||| | | || |||| |||||||||| Sbjct 821 TGGATGACCAGCACTACGGATATTATGGCAGAGTTGGGAGGAGTAAATTATGATTTCATG 762 Query 8409 TTTCAAGCGAGTTTGTTATACTCTCAAATGACATC 8443 |||||||| || | || | | | ||||| ||||| Sbjct 761 TTTCAAGCATGTCTCTTTTTCGCACAAATCACATC 727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35031484696992