Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_025371.1 Length=11082 Score E Sequences producing significant alignments: (Bits) Value seq263735 170 1e-38 seq46121 152 4e-33 seq36779 145 5e-31 seq250369 143 2e-30 seq53828 122 6e-24 seq22788 100 2e-17 seq42553 96.9 2e-16 seq120848 87.8 1e-13 >seq263735 Length=2160 Score = 170 bits (188), Expect = 1e-38 Identities = 380/565 (67%), Gaps = 8/565 (1%) Strand=Plus/Plus Query 6332 GGAAGGTTCTTTTCACTGATGTCTTGGCAGTTGAGAGAGTACTTTGTGATAACGGAATAT 6391 || || || ||| | | ||||| ||| || | ||||| |||||| | || |||| | Sbjct 1258 GGTAGATTTTTTACCTTAATGTCATGGGCCTTACGTGAGTATTTTGTGTTGACCGAATTT 1317 Query 6392 CTGATTAAGACCCATTAT-GTTCCACTATTTAAAGGATTGACTATGGCAGATGACCTCAC 6450 | || || | | || | || || ||||| | || | || ||||| ||||| ||||| Sbjct 1318 TTAATAAAAAAACTTTTTTGTCCCGTTATTTGATAGACTAACCATGGCTGATGATCTCAC 1377 Query 6451 ATCAGTCGTGAAGAAGATGTTGGACAACACAAACGGACAAGGATTAGACGACTATTCATC 6510 ||| ||||||||| || | || | | || ||||||| || |||||| Sbjct 1378 TGAAGTAACTAAGAAGATGATGAATAATTCTGATGGTCAAGGATGCCCAGATTATTCACG 1437 Query 6511 GATTTGTATAGCGAATCACATTGATTACGAAAAATGGAACAATCATCAGAGGAAAGAGTC 6570 || ||||| || || ||||||||||| ||||||||| ||||| ||||| || ||||| Sbjct 1438 CATCTGTATTGCTAACCACATTGATTATACAAAATGGAATAATCACCAGAGAAAGGAGTC 1497 Query 6571 AAATGGACCGGTCTTTCGCGTCATGGGACAATTTTTGGGATATCCCCGGCTGTTTGAGAG 6630 || || ||| | || ||||| |||||||| ||||| || | ||| | || | Sbjct 1498 CAACAAGTATGTATTTAGAGTGATGGGTCAATTTTTAGGATACCCAAGTCTGATAGAACG 1557 Query 6631 AACTCACGAGTTCTTTGAATCCAGCCTCATTTACTACAATGGCAGACCAGATTTGATGGA 6690 ||||| || || |||||| ||||| ||||| ||| | | | || ||||| |||| Sbjct 1558 GACTCATGAATTTTTTGAAAAAAGCCTTATTTATTACGTAGCCCGTCCGGATTTAATGGT 1617 Query 6691 TGTGAGGGGAGATTCTTTG---GTCAACACCACAGAAAAGCTGGTTTGTTGGGAAGGCCA 6747 || || | | | || ||| ||| ||||| || | || |||||| | ||||| Sbjct 1618 CGTAAGAGACGGAACCCTGCAAAACAAAACCCCAGAACAGATCGTGTGTTGGAAGGGCCA 1677 Query 6748 AGCAGGAGGGCTAGAAGGATTGAGGCAAAAAGGATGGAGCGTGTTGAATCTACT--AGTC 6805 ||| ||||| || ||| | || || |||||||||||| | | ||| || | | || Sbjct 1678 GAAAGGTGGGCTGGAGGGACTCAGACAGAAAGGATGGAGCATTGTAAAT-TATTTGATTC 1736 Query 6806 ATCAATAGAGAGTCATCCATCAGGAACACGATAGTCAAAGTATTAGCTCAGGGAGACAAT 6865 || | |||| | || | || || | ||| || || ||||| || ||||| ||| Sbjct 1737 TAGAAGA-AGAGGCCTCAAGAGTAAATACCAAAGTAAATGTTTTAGCCCAAGGAGATAAT 1795 Query 6866 CAGGTCATATGCACCCAGTACAAGA 6890 ||||| || || || || || |||| Sbjct 1796 CAGGTTATTTGTACTCATTATAAGA 1820 >seq46121 Length=3043 Score = 152 bits (168), Expect = 4e-33 Identities = 398/597 (67%), Gaps = 24/597 (4%) Strand=Plus/Minus Query 6291 TCATAGGATTGAAGGGAAAAGAGAGAGAGTTAAAGATCGCCGGAAGGTTCTTTTCACTGA 6350 |||| ||||||| | |||||||| | || || ||| | ||| | || |||| | Sbjct 1412 TCATCGGATTGAGGAGAAAAGAGCGGGACTTGAAGCGGGTCGGGCGTTTTTTTT----GC 1357 Query 6351 TGTCTTGGCAGTTGAGAGAGTACTTTGTGATAACGGAATATCTGATTAAGACCCATTATG 6410 | || || | ||||||| || || || | || ||||| || || || |||| | Sbjct 1356 TCTCATGACC--TGAGAGAATATTTCGTCGTTACTGAATACCTAATCAAAGAACATTTCG 1299 Query 6411 TTCCACTATTTAAAGGATTGACTATGGCAGATGACCTCACATCAGTCGTGAA---GAAGA 6467 ||||||| || |||| | |||||||| ||||||||||| || |||| |||| Sbjct 1298 TTCCACTGTTCCAAGGCCTCACTATGGCGGATGACCTCACCG-AG--GTGACACGGAAGG 1242 Query 6468 TGTTGGACAACACAAACGGACAAGGATTAGACGACTATTCATCGATTTGTATAGCGAATC 6527 ||||| | || || | || ||||||| || |||||| ||||| || || || | Sbjct 1241 TGTTGAATAATTCAGATGGGCAAGGATGTCCAGATTATTCAAGAATTTGCATTGCTAACC 1182 Query 6528 ACATTGATTACGAAAAATGGAACAATCATCAGAGGAAAGAGTCAAATGGACCGGTCTTTC 6587 |||| || ||||||||||||||||| ||||| ||||||| || || || ||||| | Sbjct 1181 ACATAGACTACGAAAAATGGAACAACCATCAACGGAAAGAATCCAACCAACATGTCTTCC 1122 Query 6588 GCGTCATGGGACAATTTTTGGGATATCCCCGGCTGTTTGAGAGAACTCACGAGTTCTTTG 6647 || ||||| || || ||||| || || | || ||||| || ||||||| Sbjct 1121 AAGTGATGGGCCAGTTCCAAGGATACCCAAATCTAATCACCAGGACTCATGACTTCTTTG 1062 Query 6648 AATCCAGCCTCATTTACTACAATGGCAGACCAGATTTGATG----GATGTGAGGGGAGAT 6703 || || || | || || ||| | |||||| || ||| | | || |||| Sbjct 1061 AAAAGAGTCTGGTGTATTATGTTGGAATACCAGACTTAATGCTCCAACGAGATGGGA--- 1005 Query 6704 TCTTTGGTCAA-CACCACAGAAAAGCTGGTTTGTTGGGAAGGCCAAGCAGGAGGGCTAGA 6762 |||| |||| | | ||| | | | || || ||| | |||||| |||||| || || Sbjct 1004 -CTTTAATCAATAAGGAAAGACACG-TTGTCTGCTGGAACGGCCAATCAGGAGATCTGGA 947 Query 6763 AGGATTGAGGCAAAAAGGATGGAGCGTGTTGAATCTACTAGTCATCAATAGA-GAGTCAT 6821 ||| | ||| |||| || ||||| || | ||| ||| || | | ||| ||| ||| Sbjct 946 AGGCCTCAGGTAAAAGGGCTGGAGTGTTCTTAATTATCTAATCCT-AGAAGACGAGGCAT 888 Query 6822 CCATCAGGAACACGATAGTCAAAGTATTAGCTCAGGGAGACAATCAGGTCATATGCA 6878 ||| | ||| || | ||| || || | ||||| ||||| | || || || |||| Sbjct 887 CCAAGAAGAATACTAAAGTAAATGTCCTTGCTCAAGGAGATATCCAAGTAATCTGCA 831 >seq36779 Length=13892 Score = 145 bits (160), Expect = 5e-31 Identities = 387/598 (65%), Gaps = 34/598 (6%) Strand=Plus/Plus Query 6291 TCATAGGATTGAAGGGAAAAGAGAGAGAGTTAAAGATCGCCGGAAGGTTCTTTTCACTGA 6350 |||| ||| | | ||| |||||||| ||| | || | || || |||| || |||| | Sbjct 5389 TCATTGGACTCAGGGGGAAAGAGAGGGAGATGAAAAGAGCGGGTCGGTTTTTAGCACTTA 5448 Query 6351 TGTCTTGGCAGTTGAGAGAGTACTTTGTGATAACGGAATATCTGATTAAGACCCATTATG 6410 |||| ||| ||||| |||| ||||| ||||| || |||||||| || ||| || | || Sbjct 5449 TGTCCTGGGAGTTGCGAGAATACTTCGTGATTACAGAATATCTTATCAAGGAGCACTTTG 5508 Query 6411 TTCCACTATTTAAAGGATTGACTATGGCAGATGACCTCACATCAGTCGTGAAGAAGATGT 6470 | ||| ||||||| || |||||||||| |||||| ||| | Sbjct 5509 TCCCATTATTTAAGGGTCTGACTATGGCCGATGAC------TCAAT-------------- 5548 Query 6471 TGGACAACACAAACGGACAAGGATTAGACGACTATTCATCGATTTGTATAGCGAATCACA 6530 ||| | | |||||||| | |||||| | || ||| |||||||||| | Sbjct 5549 -----AACTCCGATGGACAAGGGTGTCCAGACTATACTAAAATCTGTGTAGCGAATCATA 5603 Query 6531 TTGATTACGAAAAATGGAACAATCATCAGAGGAAAGAGTCAAATGGACCGGTCTTTCGCG 6590 | || || |||||||||||||| ||| | || ||| | || || || | Sbjct 5604 TCGACTATGAAAAATGGAACAACCATAAC---------TCCAATCAATATGTATTCCGTG 5654 Query 6591 TCATGGGACAATTTTTGGGATATCCCCGGCTGTTTGAGAGAACTCACGAGTTCTTTGAAT 6650 ||||||| || |||||||| || || | || |||| | || || || |||||||| Sbjct 5655 TCATGGGCCAGTTTTTGGGTTACCCTCATCTAATTGAACGGACCCATGAATTCTTTGAGA 5714 Query 6651 CCAGCCTCATTTACTACAATGGCAGACCAGATTTGATGGATGTGAGGGGAGATTCTTTGG 6710 || | ||||| ||| || | || ||| ||||| || | ||| | || Sbjct 5715 AAAGTTTAATTTATTACGTCGGTCGTCCCGATCTGATGATCCAAAGAGAAGACACCTTCC 5774 Query 6711 TCAACACCACAGAAAAGCTGGTTTGTTGGGAAGGCCAAGCAGGAGGGCTAGAAGGATTGA 6770 |||||| | | | || | ||||| ||| | || || || || || || || || | Sbjct 5775 TCAACAAGATTGGAGAGATTGTTTGCTGGAACGGACAGGCTGGTGGTCTGGAGGGGCTCT 5834 Query 6771 GGCAAAAAGGATGGAGCGTGTTGAATCTACTAGTCATCAATAGAGAGTCATCCATCAGGA 6830 | || || ||||||||||| ||||| || | | || |||||| | | | Sbjct 5835 GCCAGAAGGGATGGAGCGTTCTGAATTATCTCATTCTGGATGATGAGTCAGAGAAGAAAA 5894 Query 6831 ACACGATAGTCAAAGTATTAGCTCAGGGAGACAATCAGGTCATATGCACCCAGTACAA 6888 | || | || || || | || || ||||| ||||||||||| || ||||| ||||| Sbjct 5895 ATACCAATGTGAACGTCCTGGCCCAAGGAGATAATCAGGTCATTTGTACCCACTACAA 5952 >seq250369 Length=726 Score = 143 bits (158), Expect = 2e-30 Identities = 257/376 (68%), Gaps = 16/376 (4%) Strand=Plus/Minus Query 6291 TCATAGGATTGAAGGGAAAAGAGAGAGAGTTAAAGATCGCCGGAAGGTTCTTTTCACTGA 6350 |||| || |||| ||||||||| ||||| | |||| | |||||| || || | || | Sbjct 486 TCATTGGGTTGAGAGGAAAAGAGGGAGAGATGAAGAGGGTCGGAAGATTTTTCGCTCTAA 427 Query 6351 TGTCTTGGCAGTTGAGAGAGTACTTTGTGATAACGGAATATCTGATTAAGACCCATTATG 6410 |||||||| | | | | |||||||||| |||| || ||||| ||||| || | || Sbjct 426 TGTCTTGGGATCTTCGGGTGTACTTTGTGCTAACAGAGTATCTCATTAAAGAACACTTTG 367 Query 6411 TTCCACTATTTAAAGGATTGACTATGGCAGATGACCTCACATCAGTCGTGAAGAAGATGT 6470 | || ||||| ||||||||||| ||||| |||| || || ||| | ||| ||| Sbjct 366 TCCCCCTATTCAAAGGATTGACAATGGCCAATGATCTGACCGAAGTTACCAGGAAAATGA 307 Query 6471 TGGA-CAACACAAACGGACAAGGATTAGACGACTATTCATCGATTTGTATAGCGAATCAC 6529 | || | |||| || || | ||| || || ||| | |||||| ||| || Sbjct 306 AAAAGTTACTCGGACGGGCAGGGTTGTCCCGATTACTCGAAGATCTCTATAGCAAATTAC 247 Query 6530 ATTGATTACGAAAAATGGAACAATCATCAGAGGAAAGAGTCAAATGGACCGGTCTTTCGC 6589 || |||||| |||| ||||| |||||||| |||| || |||||| | Sbjct 246 ATCGATTACAAAAAGTGGAATAATCATCAACGGAAGGA-------------GTCTTTACC 200 Query 6590 GTCATGGGACAATTTTTGGGATATCCCCGGCTGTTTGAGAGAACTCACGAGTTCTTTGAA 6649 |||||||| ||||| ||||| || || || ||| | ||||| ||||||||||| Sbjct 199 GTCATGGGTCAATTCTTGGGCTACCCTACCCTCATTGCCTGCACTCATGAGTTCTTTGA- 141 Query 6650 TCCAGCCTCATTTACT 6665 || ||||| |||| Sbjct 140 -GAAGTCTCATCTACT 126 >seq53828 Length=2951 Score = 122 bits (134), Expect = 6e-24 Identities = 271/401 (68%), Gaps = 12/401 (3%) Strand=Plus/Minus Query 8168 GCATATCTGGGATCGAAAACGTCAGAGACCACTTCAATCCTACAACCATGGGAGAAAGAC 8227 || ||||||||||| | ||| ||||||| || || | ||||||||||| || || Sbjct 1115 GCTTATCTGGGATCAAGAACATCAGAGAGAACCAATATAATGCAACCATGGGAAAAGTAC 1056 Query 8228 AGCAAAGTACCGATAATCAAAAGAGCAACGAAATTGAGAGACAGCATATCATGGTTCGTT 8287 | || || ||| | ||| |||||| || | | | ||||| |||||| ||||| || Sbjct 1055 ACAAATGTTCCGCTTATCGCAAGAGCCACCAGACTAAGAGATTCCATATCCGGGTTCATT 996 Query 8288 CAACCAGATTCTAAATTGGCCAAAAGTAT--TCAACAAAATCTGAAAGCACTAACAGGAG 8345 | || || || ||||| || || || | || ||| | |||| ||||| | Sbjct 995 GACATCGACTCGAATTTGGCTAACAGCATTATGGACCTGATC--CAGTCACTGACAGGTG 938 Query 8346 AGGATTGGGAGGAGGACAT--CCAAGGATTCAAAAGAACTGGATCAGCATTACACAGATT 8403 |||| ||| | || ||||| |||| ||||||||||| || ||||| | || ||||| Sbjct 937 AGGACTGGAAAGAAGACATCACCAA--CTTCAAAAGAACAGGGTCAGCCCTTCATAGATT 880 Query 8404 CACAACATCCCG--AGTCAGTAATGGAGGATTCAGCGCCCAGAGTCCAGCCAAATTAACT 8461 || | | || |||| | ||||| | || ||||| | ||| || || || | Sbjct 879 TTCATCTGCACGGATGTCATCA--GGAGGGTACACAGCCCAAAATCCCGCGAAGTTGTCC 822 Query 8462 CGGATAATGACAACCACAGATACTATGAGAGACTTGGGTGACCAAAACTATGATTTCATG 8521 |||| | | || || |||| |||| ||| ||||| | ||| |||||||||||| Sbjct 821 TGGATGACCAGCACTACGGATATTATGGCAGAGTTGGGAGGAGTAAATTATGATTTCATG 762 Query 8522 TTTCAAGCAGGAATCCTATACAGCCAAATGACAACCGGAGA 8562 ||||||||| | || | | | ||||| ||| | ||||| Sbjct 761 TTTCAAGCATGTCTCTTTTTCGCACAAATCACATCGGGAGA 721 >seq22788 Length=2006 Score = 100 bits (110), Expect = 2e-17 Identities = 154/216 (71%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 6350 ATGTCTTGGCAGTTGAGAGAGTACTTTGTGATAACGGAATATCTGATTAAGACCCATTAT 6409 ||||| ||| | | | |||||||||||||| || || |||||||| |||| ||||| Sbjct 1747 ATGTCATGGAAACTCCGTGAGTACTTTGTGATCACAGAGTATCTGATCAAGAAGTATTAT 1688 Query 6410 GTTCCACTATTTAAAGGATTGACTATGGCAGATGACCTCACATCAGTCGTGAAGAAGATG 6469 ||||| |||| || || | || ||||| || || || || || |||| |||||| Sbjct 1687 GTTCCGTTATTCAAGGGGCTAACAATGGCTGACGATCTAACCGAGGTGATGAAAAAGATG 1628 Query 6470 TTGGACAACACAAACGGACAAGGATTAGACGACTATTCATC-GA-TTTGTATAGCGAATC 6527 || || | || | || ||||||| | ||||| || | || | || |||||||| | Sbjct 1627 ATGAACCATTCAGATGGTCAAGGATGTGCAGACTA--CACCAGAGTCTGCATAGCGAACC 1570 Query 6528 ACATTGATTACGAAAAATGGAACAATCATCAGAGGA 6563 | || |||||| || |||||||| || ||| ||| Sbjct 1569 ATATAGATTACACCAAGTGGAACAACCACCAGCGGA 1534 >seq42553 Length=2057 Score = 96.9 bits (106), Expect = 2e-16 Identities = 176/260 (68%), Gaps = 12/260 (5%) Strand=Plus/Minus Query 6299 TTGAAGGGAAAAGAGAGAGAGTTAAAGATCGCCGGAAGGTTCTTTTCACTGATGTCTTGG 6358 |||| ||| || ||||||||| | || | | ||||| || ||| | || ||||| ||| Sbjct 611 TTGAGGGGGAAGGAGAGAGAGATGAAAAGGGTTGGAAGATTTTTTGCTCTCATGTCCTGG 552 Query 6359 CAGTTGAGAGAGTACTTTGTGATAACGGAATATCTGATTAAGACCCATTATGTTCCACTA 6418 | | ||||||||||||| | || || || || || || || | || || | Sbjct 551 GATCTTCGAGAGTACTTTGTCCTCACAGAGTACCTCATCAAAGAGCACTTCGTCCCCTTG 492 Query 6419 TTTAAAGGATTGACTATGGCAGATGACCTCACATCAGTCGTGAAGAAGATGTTGGACAAC 6478 || |||||||| || ||||| || || || || || | ||||||| || |||| Sbjct 491 TTCAAAGGATTAACAATGGCCGACGATCTGACTGAGGTTACAAGGAAGATGATGAACAAT 432 Query 6479 ACAAACGGACAAGGATTAGACGACTATTCATCGATTTGTATAGCGAATCACATTGATTAC 6538 ||||||||||||| |||| ||| || ||||| || ||||| ||||| Sbjct 431 TCAAACGGACAAGG------------TTCAAAGATCTGCATAGCAAAACACATCGATTAT 384 Query 6539 GAAAAATGGAACAATCATCA 6558 ||| ||||| |||||||| Sbjct 383 ACAAAGTGGAATAATCATCA 364 >seq120848 Length=1229 Score = 87.8 bits (96), Expect = 1e-13 Identities = 166/239 (69%), Gaps = 8/239 (3%) Strand=Plus/Minus Query 6338 TTCTTTTCACTGATGTCTTGGCAGTTGAGAGAGTACTTTGTGATAACGGAATATCTGATT 6397 || ||| ||| |||| | ||| ||||||| || |||||||| | || || || || Sbjct 682 TTTTTTGCACCGATGACATGGGAGTTGAGGGAATACTTTGTAACCACTGAGTA----ATC 627 Query 6398 AAGACCCATTATGTTCCACTATTTAAAGGATTGACTATGGCAGATGACCTCACATCAGTC 6457 || ||| || || || ||| | || |||| |||||| ||| |||| || || Sbjct 626 AAACAAAATTTTGACCCCCTCTTTGATGGTTTGATTATGGCCGATAACCTTACTGAGGTT 567 Query 6458 GTGAAGAAGATGTTGGACAACACAAACGGACAAGGATTAGAC-GACTATTCATCG-ATTT 6515 ||||||||||| || || || ||| |||| || || | || || || ||| ||| Sbjct 566 AATAAGAAGATGTTACACGACTCAGACGAACAA-GAGTATTCTGATTACTC-TCGTGTTT 509 Query 6516 GTATAGCGAATCACATTGATTACGAAAAATGGAACAATCATCAGAGGAAAGAGTCAAAT 6574 ||| || |||||||| || || || || |||||||||| || |||||| |||||| Sbjct 508 GTACAGTCAATCACATAGAGTATGAGAAGTGGAACAATCGCCAAAGGAAAACATCAAAT 450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35232430115904