Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_025376.1 Length=11096 Score E Sequences producing significant alignments: (Bits) Value seq263735 206 2e-49 seq46121 167 2e-37 seq22788 138 8e-29 seq42553 127 1e-25 seq250369 125 5e-25 seq53828 91.5 1e-14 seq97353 82.4 5e-12 seq120848 78.8 7e-11 >seq263735 Length=2160 Score = 206 bits (228), Expect = 2e-49 Identities = 734/1129 (65%), Gaps = 21/1129 (2%) Strand=Plus/Plus Query 5787 GGATCATTTAGGCATTGGGGCCACCCTTTCATCTCTTACTTTGAGGGTCTGCAAAAACTA 5846 || ||||| || || ||||| ||||| ||| | ||| || || || |||||||| || Sbjct 698 GGTTCATTCAGACACTGGGGTCACCCCTTCCTGGATTATTTAGAAGGACTGCAAAAGTTA 757 Query 5847 CATGACCAAGTAACACTCCCCAAACAAATTGACCGCGCATATGCTGAGGCATTGGCCAGC 5906 ||| ||||||| | |||||| ||||||| || ||||| | | | |||||| Sbjct 758 TTTGAACAAGTAAGTTTACCCAAAGAAATTGATGATGCTTATGCACAAAAACTTGCCAGC 817 Query 5907 GATCTTGCATATACAGTATTACAGAGGAAGTTCTCAGAAGAGAAAAAATGGTACGTAGAT 5966 | || ||||| | |||| | | | ||| ||| || |||| |||||| || ||| Sbjct 818 AACCTGGCATACAAAGTACTGAAAAAGAAATTCGATGACACCAAAACATGGTATGTTGAT 877 Query 5967 CCAGATGGAT-TACCCGCACGA-CATCCTTTAAAAGAACACATTGAAAATGGAACATGGC 6024 | | | | | |||| |||| || ||| | ||| | || |||| ||||||||| Sbjct 878 C-ACACCCTTCTTCCCG-ACGATCACCCTCTCAAACCAGCAATCCAAAACCGAACATGGC 935 Query 6025 CTACAGCCGCTCAAAC---ACAAGACTTTGGAGACAGGTGGAATCAGTTGCCACTGACTA 6081 | | | ||| || | ||| | ||| |||||| || ||| ||| ||| | Sbjct 936 CCTC---CCCTCGAATGATAAGAGAAATGAAAGATAGGTGGCATTTGTTACCATTGATGA 992 Query 6082 AATGCTTTGAAATACCCGATTTGTTGGATCCCTCTGTAATATATTCAGATAAGAGTCACT 6141 |||| || || || || || | |||| ||| || || ||||||||||||| Sbjct 993 AATGTTTCGAGATTCCGGACACAGTAGATCAAAGCCAAATTTACTCTGATAAGAGTCACT 1052 Query 6142 CAATG--AACAGACGAGAGGTTTTG-GATCACGT-AGCAACCACACCAAATAAACCAATT 6197 | | || | | ||| ||||| || || | | || || |||| | || Sbjct 1053 CCCCGTAAATAAAACAGACCTTTTGAGAGAACATCAAGAAAAACTGAAAATGGGCAGCTT 1112 Query 6198 CCCAGTAAAAAA-GTATTGGAGACCATGCTAAATAACCCTGCTACAGATTGGCCATCCTT 6256 | || ||| || | || ||| | || | ||||||||| ||||| | || Sbjct 1113 CACAACGAAACGCGTGCTTGACACCCTCGTAGACTCACCTGCTACAAATTGGAAACAATT 1172 Query 6257 CCTGAAGACAGTAGATGAAAAAGGGTTGCCCCGTGACAGTCTCATCATAGGGTTAAAAGG 6316 || || || |||| || || ||||| ||| ||| | ||||| | ||| Sbjct 1173 TTTGCAGGAGGTTAATGACAATGGCCTGCCCGATGAGTCTCTAGTTATAGGACTCCGAGG 1232 Query 6317 AAAGGAGAGAGAATTGAAAATTGCCGGAAGATTTTTCTCCCTAATGTCATGGCAGTTAAG 6376 || ||| | ||| |||| | || |||||||| || ||||||||||| ||| | Sbjct 1233 TAAAGAGCGGGAAATGAAGAGAATAGGTAGATTTTTTACCTTAATGTCATGGGCCTTACG 1292 Query 6377 GGAGTACTTCGTCATCACAGAGTACTTGATCAAAACACACTAT-GTCCCGTTGTTCAAGG 6435 ||||| || || | || || | || || |||| || | | |||||||| || | Sbjct 1293 TGAGTATTTTGTGTTGACCGAATTTTTAATAAAAAAACTTTTTTGTCCCGTTATTTGATA 1352 Query 6436 GACTGACGATGGCAGATGACCTTACATCCGTTGTGAAGAAGATGTTGGACAACACAAATG 6495 |||| || ||||| ||||| || || || ||||||||| || | || | ||| Sbjct 1353 GACTAACCATGGCTGATGATCTCACTGAAGTAACTAAGAAGATGATGAATAATTCTGATG 1412 Query 6496 GACAAGGATTGGATGACTACTCCTCTATCTGTATTGCCAACCACATTGACTACGAAAAAT 6555 | ||||||| || || || ||||||||||| ||||||||||| || ||||| Sbjct 1413 GTCAAGGATGCCCAGATTATTCACGCATCTGTATTGCTAACCACATTGATTATACAAAAT 1472 Query 6556 GGAATAATCATCAGAGGAAAGAGTCTAATGGTCCAGTGTTTCGAGTAATGGGACAGTTTC 6615 |||||||||| ||||| || ||||| || || ||| |||| ||||| || ||| Sbjct 1473 GGAATAATCACCAGAGAAAGGAGTCCAACAAGTATGTATTTAGAGTGATGGGTCAATTTT 1532 Query 6616 TAGGGTATCCTAGACTGTTTGAAAGGACACATGAGTTCTTTGAGTCCAGCCTCATCTACT 6675 |||| || || || ||| | ||| |||| ||||| || ||||| ||||| || || | Sbjct 1533 TAGGATACCCAAGTCTGATAGAACGGACTCATGAATTTTTTGAAAAAAGCCTTATTTATT 1592 Query 6676 ACAATGGAAGACCAGACCTGATGGATGTGAGAG-GGGATTCAT--TGATCAACACTACAG 6732 || | | || || | |||| || |||| ||| | | | ||| || ||| Sbjct 1593 ACGTAGCCCGTCCGGATTTAATGGTCGTAAGAGACGGAACCCTGCAAAACAAAACCCCAG 1652 Query 6733 ACAAATTAGTGTGTTGGGAGGGACAAGCAGGAGGTCTGGAAGGATTGCGACAAAAAGGAT 6792 | | | ||||||||| |||| || ||| || ||||| ||| | |||| ||||||| Sbjct 1653 AACAGATCGTGTGTTGGAAGGGCCAGAAAGGTGGGCTGGAGGGACTCAGACAGAAAGGAT 1712 Query 6793 GGAGCGTTTTGAACCTACTAG-TCATAAACAGAGAGTCTTCCATCCGAAATACTGTGGTA 6851 ||||| || | || || | | | || | |||| | || | |||||| ||| Sbjct 1713 GGAGCATTGT-AAATTATTTGATTCTAGAAGAAGAGGCCTCAAGAGTAAATACCAAAGTA 1771 Query 6852 AAGGTTCTTGCCCAAGGAGACAATCAGGTGATCTGCACTCAATACAAGA 6900 || ||| | ||||||||||| |||||||| || || ||||| || |||| Sbjct 1772 AATGTTTTAGCCCAAGGAGATAATCAGGTTATTTGTACTCATTATAAGA 1820 >seq46121 Length=3043 Score = 167 bits (184), Expect = 2e-37 Identities = 359/528 (68%), Gaps = 14/528 (3%) Strand=Plus/Minus Query 6375 AGGGAGTACTTCGTCATCACAGAGTACTTGATCAAAACACACTATGTCCCGTTGTTCAAG 6434 || || || |||||| | || || ||| | |||||| ||| | || || ||||| | Sbjct 1344 AGAGAATATTTCGTCGTTACTGAATACCTAATCAAAGAACATTTCGTTCCACTGTTCCAA 1285 Query 6435 GGACTGACGATGGCAGATGACCTTACATCCGTTGTGAA---GAAGATGTTGGACAACACA 6491 || || || ||||| |||||||| || || |||| |||| ||||| | || || Sbjct 1284 GGCCTCACTATGGCGGATGACCTCAC---CGAGGTGACACGGAAGGTGTTGAATAATTCA 1228 Query 6492 AATGGACAAGGATTGGATGACTACTCCTCTATCTGTATTGCCAACCACATTGACTACGAA 6551 |||| ||||||| || || || || || ||||| |||||||| ||||||||| Sbjct 1227 GATGGGCAAGGATGTCCAGATTATTCAAGAATTTGCATTGCTAACCACATAGACTACGAA 1168 Query 6552 AAATGGAATAATCATCAGAGGAAAGAGTCTAATGGTCCAGTGTTTCGAGTAATGGGACAG 6611 |||||||| || ||||| ||||||| || || | || || | ||| ||||| ||| Sbjct 1167 AAATGGAACAACCATCAACGGAAAGAATCCAACCAACATGTCTTCCAAGTGATGGGCCAG 1108 Query 6612 TTTCTAGGGTATCCTAGACTGTTTGAAAGGACACATGAGTTCTTTGAGTCCAGCCTCATC 6671 || | ||| || || | || | ||||| ||||| |||||||| || || | Sbjct 1107 TTCCAAGGATACCCAAATCTAATCACCAGGACTCATGACTTCTTTGAAAAGAGTCTGGTG 1048 Query 6672 TACTACAATGGAAGACCAGACCTGATG--GATGTGAGAGGGGATTCATTGATCAA-CACT 6728 || || ||||| ||||||| | ||| |||| |||| | || ||||| | Sbjct 1047 TATTATGTTGGAATACCAGACTTAATGCTCCAACGAGATGGGA--CTTTAATCAATAAGG 990 Query 6729 ACAGACAAATTAGTGTGTTGGGAGGGACAAGCAGGAGGTCTGGAAGGATTGCGACAAAAA 6788 | ||||| || || || ||| | || ||| |||||| ||||||||| | | |||| Sbjct 989 AAAGACACGTT-GTCTGCTGGAACGGCCAATCAGGAGATCTGGAAGGCCTCAGGTAAAAG 931 Query 6789 GGATGGAGCGTTTTGAACCTACTAGTCATAAACAGA-GAGTCTTCCATCCGAAATACTGT 6847 || ||||| ||| | || ||| || || | ||| ||| | |||| |||||| Sbjct 930 GGCTGGAGTGTTCTTAATTATCTAATCCTAGA-AGACGAGGCATCCAAGAAGAATACTAA 872 Query 6848 GGTAAAGGTTCTTGCCCAAGGAGACAATCAGGTGATCTGCACTCAATA 6895 ||||| || ||||| |||||||| | || || ||||||| ||| || Sbjct 871 AGTAAATGTCCTTGCTCAAGGAGATATCCAAGTAATCTGCAATCACTA 824 >seq22788 Length=2006 Score = 138 bits (152), Expect = 8e-29 Identities = 189/264 (72%), Gaps = 0/264 (0%) Strand=Plus/Minus Query 6310 TAAAAGGAAAGGAGAGAGAATTGAAAATTGCCGGAAGATTTTTCTCCCTAATGTCATGGC 6369 ||| ||| || || ||||| |||| | |||||||| |||| || ||||||||||| Sbjct 1797 TAAGAGGGAAAGAACGAGAAATGAAGAGGATCGGAAGATATTTCGCCTTAATGTCATGGA 1738 Query 6370 AGTTAAGGGAGTACTTCGTCATCACAGAGTACTTGATCAAAACACACTATGTCCCGTTGT 6429 | | | |||||||| || ||||||||||| ||||||| | | ||||| ||||| | Sbjct 1737 AACTCCGTGAGTACTTTGTGATCACAGAGTATCTGATCAAGAAGTATTATGTTCCGTTAT 1678 Query 6430 TCAAGGGACTGACGATGGCAGATGACCTTACATCCGTTGTGAAGAAGATGTTGGACAACA 6489 ||||||| || || ||||| || || || || || |||| |||||| || || | Sbjct 1677 TCAAGGGGCTAACAATGGCTGACGATCTAACCGAGGTGATGAAAAAGATGATGAACCATT 1618 Query 6490 CAAATGGACAAGGATTGGATGACTACTCCTCTATCTGTATTGCCAACCACATTGACTACG 6549 || |||| ||||||| | |||||| || |||| || || ||||| || || ||| Sbjct 1617 CAGATGGTCAAGGATGTGCAGACTACACCAGAGTCTGCATAGCGAACCATATAGATTACA 1558 Query 6550 AAAAATGGAATAATCATCAGAGGA 6573 || ||||| || || ||| ||| Sbjct 1557 CCAAGTGGAACAACCACCAGCGGA 1534 >seq42553 Length=2057 Score = 127 bits (140), Expect = 1e-25 Identities = 180/254 (71%), Gaps = 12/254 (5%) Strand=Plus/Minus Query 6315 GGAAAGGAGAGAGAATTGAAAATTGCCGGAAGATTTTTCTCCCTAATGTCATGGCAGTTA 6374 || ||||||||||| |||||| | ||||||||||| | || ||||| ||| | | Sbjct 605 GGGAAGGAGAGAGAGATGAAAAGGGTTGGAAGATTTTTTGCTCTCATGTCCTGGGATCTT 546 Query 6375 AGGGAGTACTTCGTCATCACAGAGTACTTGATCAAAACACACTATGTCCCGTTGTTCAAG 6434 | |||||||| ||| ||||||||||| | |||||| |||| ||||| |||||||| Sbjct 545 CGAGAGTACTTTGTCCTCACAGAGTACCTCATCAAAGAGCACTTCGTCCCCTTGTTCAAA 486 Query 6435 GGACTGACGATGGCAGATGACCTTACATCCGTTGTGAAGAAGATGTTGGACAACACAAAT 6494 ||| | || ||||| || || || || ||| | ||||||| || |||| |||| Sbjct 485 GGATTAACAATGGCCGACGATCTGACTGAGGTTACAAGGAAGATGATGAACAATTCAAAC 426 Query 6495 GGACAAGGATTGGATGACTACTCCTCTATCTGTATTGCCAACCACATTGACTACGAAAAA 6554 |||||||| || | | ||||| || || || ||||| || || ||| Sbjct 425 GGACAAGG-TTCAAAG-----------ATCTGCATAGCAAAACACATCGATTATACAAAG 378 Query 6555 TGGAATAATCATCA 6568 |||||||||||||| Sbjct 377 TGGAATAATCATCA 364 >seq250369 Length=726 Score = 125 bits (138), Expect = 5e-25 Identities = 253/376 (67%), Gaps = 16/376 (4%) Strand=Plus/Minus Query 6301 TCATAGGGTTAAAAGGAAAGGAGAGAGAATTGAAAATTGCCGGAAGATTTTTCTCCCTAA 6360 |||| ||||| | |||||| ||| |||| |||| | | ||||||||||||| | |||| Sbjct 486 TCATTGGGTTGAGAGGAAAAGAGGGAGAGATGAAGAGGGTCGGAAGATTTTTCGCTCTAA 427 Query 6361 TGTCATGGCAGTTAAGGGAGTACTTCGTCATCACAGAGTACTTGATCAAAACACACTATG 6420 |||| ||| | | ||| |||||| || | |||||||| | || ||| ||||| || Sbjct 426 TGTCTTGGGATCTTCGGGTGTACTTTGTGCTAACAGAGTATCTCATTAAAGAACACTTTG 367 Query 6421 TCCCGTTGTTCAAGGGACTGACGATGGCAGATGACCTTACATCCGTTGTGAAGAAGATGT 6480 |||| | ||||| ||| |||| ||||| |||| || || ||| | ||| ||| Sbjct 366 TCCCCCTATTCAAAGGATTGACAATGGCCAATGATCTGACCGAAGTTACCAGGAAAATGA 307 Query 6481 TGGA-CAACACAAATGGACAAGGATTGGATGACTACTCCTCTATCTGTATTGCCAACCAC 6539 | || | | || || || | || ||||| |||| ||| || || || Sbjct 306 AAAAGTTACTCGGACGGGCAGGGTTGTCCCGATTACTCGAAGATCTCTATAGCAAATTAC 247 Query 6540 ATTGACTACGAAAAATGGAATAATCATCAGAGGAAAGAGTCTAATGGTCCAGTGTTTCGA 6599 || || ||| |||| |||||||||||||| |||| ||||| ||| Sbjct 246 ATCGATTACAAAAAGTGGAATAATCATCAACGGAAGGAGTC-------------TTTACC 200 Query 6600 GTAATGGGACAGTTTCTAGGGTATCCTAGACTGTTTGAAAGGACACATGAGTTCTTTGAG 6659 || ||||| || || | || || |||| || ||| | || ||||||||||||||| Sbjct 199 GTCATGGGTCAATTCTTGGGCTACCCTACCCTCATTGCCTGCACTCATGAGTTCTTTGAG 140 Query 6660 TCCAGCCTCATCTACT 6675 || |||||||||| Sbjct 139 --AAGTCTCATCTACT 126 >seq53828 Length=2951 Score = 91.5 bits (100), Expect = 1e-14 Identities = 245/369 (66%), Gaps = 12/369 (3%) Strand=Plus/Minus Query 8178 GCATATCTGGGATCCAAGACTTCGGAAACGACCTCGATACTCCAACCATGGGAAAAGGAC 8237 || ||||||||||| | || || || | ||| ||| | ||||||||||||||| || Sbjct 1115 GCTTATCTGGGATCAAGAACATCAGAGAGAACCAATATAATGCAACCATGGGAAAAGTAC 1056 Query 8238 AGCAAAGTTCCTATCATAAGAAGAGCCACGAAGTTGAGAGACAGTATTTCTTGGTT--TG 8295 | || ||||| | || ||||||||| | | ||||| || || |||| | Sbjct 1055 ACAAATGTTCCGCTTATCGCAAGAGCCACCAGACTAAGAGATTCCATATCCGGGTTCATT 996 Query 8296 TACAACCTGATTCCAAATTGGCAAAGAGCATTCAACAGAATT--TGAAAGCACTAACAGG 8353 ||| | || || || ||||| || |||||| | || | | | |||| ||||| Sbjct 995 GACATC--GACTCGAATTTGGCTAACAGCATT--ATGGACCTGATCCAGTCACTGACAGG 940 Query 8354 AGAGGATTGGGCAGAGGATATCCAGGGATTCAAACGAACAGGTTCAGCGTTGCATAGATT 8413 ||||| ||| ||| || ||| |||||| ||||||| ||||| | |||||||| Sbjct 939 TGAGGACTGGAAAGAAGACATCACCAACTTCAAAAGAACAGGGTCAGCCCTTCATAGATT 880 Query 8414 CACCACATCTCG--TATCAGCAATGGAGGTTTCAGTGCGCAAAGCCCAGCTAAGTTGACT 8471 | | | || | ||| || ||||| | || || |||| || || |||||| | Sbjct 879 TTCATCTGCACGGATGTCATCA--GGAGGGTACACAGCCCAAAATCCCGCGAAGTTGTCC 822 Query 8472 AGGATCATGACAACAACAGACACTATGCGAGATCTTGGAGACCAAAATTATGACTTCATG 8531 |||| | | || || || | |||| ||| | |||| ||||||||| |||||| Sbjct 821 TGGATGACCAGCACTACGGATATTATGGCAGAGTTGGGAGGAGTAAATTATGATTTCATG 762 Query 8532 TTCCAGGCA 8540 || || ||| Sbjct 761 TTTCAAGCA 753 >seq97353 Length=1375 Score = 82.4 bits (90), Expect = 5e-12 Identities = 178/261 (68%), Gaps = 9/261 (3%) Strand=Plus/Plus Query 8283 ATTTCTTGGTTTGTACAACCTGATTCCAAATTGGCAAAGAGCATTCAACAGAATTTGAAA 8342 ||||| |||||||| | || ||||| || ||||||| ||||| ||||| || | Sbjct 923 ATTTCATGGTTTGTTGAGCCAGATTCAAATCTGGCAAAAAGCAT--AACAGGGCTTCTAT 980 Query 8343 G--CACTAACAGGAGAGGATTGGGCAGAGGATATCCAGGGATTCAAACGAACAGGTTCAG 8400 | || ||||||||| |||| |||||||| | ||||| | ||||| || | Sbjct 981 ATTCTCTGACAGGAGAGAATTGAAGCGAGGATATTCGAAATTTCAAGAGGACAGGATCTG 1040 Query 8401 CGTTGCATAGATTCACCACATCTCGTAT--CAGCAATGGAGGTTTCAGTGCGCAAAGCCC 8458 | ||||| |||| | || ||||| || || || | | ||| || | ||| ||| Sbjct 1041 CATTGCAGCGATTTAT-ACCTCTCGGATGTCATCAGGCGGGTATTCCGTAC--AAAACCC 1097 Query 8459 AGCTAAGTTGACTAGGATCATGACAACAACAGACACTATGCGAGATCTTGGAGACCAAAA 8518 || || ||||| |||| | | | || ||||||||| ||| | || | ||||| Sbjct 1098 TGCAAAATTGACCTGGATGACTAGTAACACTGACACTATGACAGAAGTCGGTGGGCAAAA 1157 Query 8519 TTATGACTTCATGTTCCAGGC 8539 ||||||||||||| |||||| Sbjct 1158 CTATGACTTCATGTACCAGGC 1178 >seq120848 Length=1229 Score = 78.8 bits (86), Expect = 7e-11 Identities = 159/235 (68%), Gaps = 7/235 (3%) Strand=Plus/Minus Query 6344 AAGATTTTTCT---CCCTAATGTCATGGCAGTTAAGGGAGTACTTCGTCATCACAGAGTA 6400 ||||||||| | | | ||| ||||| |||| ||||| ||||| || | ||| ||||| Sbjct 689 AAGATTTTTTTTTGCACCGATGACATGGGAGTTGAGGGAATACTTTGTAACCACTGAGTA 630 Query 6401 CTTGATCAAAACACACTATGTCCCGTTGTTCAAGGGACTGACGATGGCAGATGACCTTAC 6460 |||||| | | | || ||| | || | || ||| ||||| ||| ||||||| Sbjct 629 ----ATCAAACAAAATTTTGACCCCCTCTTTGATGGTTTGATTATGGCCGATAACCTTAC 574 Query 6461 ATCCGTTGTGAAGAAGATGTTGGACAACACAAATGGACAAGGATTGGATGACTACTCCTC 6520 ||| ||||||||||| || || || | | ||||| | ||| ||||| Sbjct 573 TGAGGTTAATAAGAAGATGTTACACGACTCAGACGAACAAGAGTATTCTGATTACTCTCG 514 Query 6521 TATCTGTATTGCCAACCACATTGACTACGAAAAATGGAATAATCATCAGAGGAAA 6575 | | |||| | ||| ||||| || || || || ||||| |||| || |||||| Sbjct 513 TGTTTGTACAGTCAATCACATAGAGTATGAGAAGTGGAACAATCGCCAAAGGAAA 459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35277084653440