Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_025378.1 Length=11202 Score E Sequences producing significant alignments: (Bits) Value seq46121 179 3e-41 seq36779 156 3e-34 seq263735 147 2e-31 seq250369 123 2e-24 seq110009 80.6 2e-11 seq22788 78.8 7e-11 >seq46121 Length=3043 Score = 179 bits (198), Expect = 3e-41 Identities = 256/360 (71%), Gaps = 8/360 (2%) Strand=Plus/Minus Query 6353 AAAGAGAGAGAATTAAAATTGATTGGGCGTTTCTTTT-CTCTCATGTCTTGGAAATTGAG 6411 |||||| | || || || | | |||||||| |||| |||||||| | || || Sbjct 1395 AAAGAGCGGGACTTGAAGCGGGTCGGGCGTTTTTTTTGCTCTCATGACCTG-------AG 1343 Query 6412 AGAATACTTCGTCATAACCGAGCACCTAATTAAGACTCACTTTGTCCCTCTGTTCCACGG 6471 |||||| |||||| | || || ||||||| || || || || || |||||||| || Sbjct 1342 AGAATATTTCGTCGTTACTGAATACCTAATCAAAGAACATTTCGTTCCACTGTTCCAAGG 1283 Query 6472 ACTTACGATGGCAGATGATCTCACATCAGTGATCAAGAAGATGATGGACAGTTCCTCGGG 6531 || || ||||| ||||| ||||| |||| |||| || || | | ||| || Sbjct 1282 CCTCACTATGGCGGATGACCTCACCGAGGTGACACGGAAGGTGTTGAATAATTCAGATGG 1223 Query 6532 GCAGGGGTTGACAGATTACTCAGCTGTATGCATAGCCAATCATATCGACTACGAAAAATG 6591 ||| || | ||||||| ||| | ||||| || || || || |||||||||||||| Sbjct 1222 GCAAGGATGTCCAGATTATTCAAGAATTTGCATTGCTAACCACATAGACTACGAAAAATG 1163 Query 6592 GAACAATCACCAGCGGAAAGAATCCAATGGGCCGGTATTCCGAGTAATGGGCCAATTCTT 6651 |||||| || || |||||||||||||| | || |||| ||| |||||||| ||| Sbjct 1162 GAACAACCATCAACGGAAAGAATCCAACCAACATGTCTTCCAAGTGATGGGCCAGTTCCA 1103 Query 6652 GGGCTTCCCCAATCTGATATCCAGAACGCACGAATTCTTTGAGAAAAGTTTGGTTTATTA 6711 || | ||| ||||| || |||| || || || |||||||| || ||| |||| ||||| Sbjct 1102 AGGATACCCAAATCTAATCACCAGGACTCATGACTTCTTTGAAAAGAGTCTGGTGTATTA 1043 >seq36779 Length=13892 Score = 156 bits (172), Expect = 3e-34 Identities = 413/624 (66%), Gaps = 60/624 (10%) Strand=Plus/Plus Query 6324 AGGACGACCTTGTGATTGGACTTAAAGGGAAAGAGAGAGA-ATTAAAATTGATTGGG-CG 6381 ||||| ||||| |||||||| | ||||||||||| || || |||| || ||| || Sbjct 5377 AGGACTCTCTTGTCATTGGACTCAGGGGGAAAGAGAGGGAGATGAAAA--GAGCGGGTCG 5434 Query 6382 TTTCTTTTCTCTCATGTCTTGGAAATTGAGAGAATACTTCGTCATAACCGAGCACCTAAT 6441 || || | || ||||| ||| | ||| ||||||||||||| || || || | || || Sbjct 5435 GTTTTTAGCACTTATGTCCTGGGAGTTGCGAGAATACTTCGTGATTACAGAATATCTTAT 5494 Query 6442 TAAGACTCACTTTGTCCCTCTGTTCCACGGACTTACGATGGCAGATGATCTCACATCAGT 6501 ||| ||||||||||| | || | || || || ||||| ||||| |||| || | | Sbjct 5495 CAAGGAGCACTTTGTCCCATTATTTAAGGGTCTGACTATGGCCGATGA-CTCA-ATAACT 5552 Query 6502 GATCAAGAAGATGATGGACAGTTCCTCGGGGCAGGG-GTTGACAGATTACTCAGCTGTAT 6560 |||||||| |||| || | | |||| | | | | Sbjct 5553 CC----------GATGGACA------------AGGGTGTCCAGACTATACTAAAATCTGT 5590 Query 6561 GCATAGCCAATCATATCGACTACGAAAAATGGAACAATCACCAGCGGAAAGAATCCAATG 6620 | |||| |||||||||||||| |||||||||||||| || | || ||| ||| Sbjct 5591 G--TAGCGAATCATATCGACTATGAAAAATGGAACAACCATAACTCCAATCAAT---ATG 5645 Query 6621 GGCCGGTATTCCGAGTAATGGGCCAATTCTTGGGCTTCCCCAATCTGATATCCAGAACGC 6680 ||||||| || |||||||| || ||||| | ||| |||| || | || | Sbjct 5646 ------TATTCCGTGTCATGGGCCAGTTTTTGGGTTACCCTCATCTAATTGAACGGACCC 5699 Query 6681 ACGAATTCTTTGAGAAAAGTTTGGTTTATTACAATGGCCGGCCAGATTTGATGAGAGTAT 6740 | |||||||||||||||||||| |||||||| || || || ||| |||||| | Sbjct 5700 ATGAATTCTTTGAGAAAAGTTTAATTTATTACGTCGGTCGTCCCGATCTGATGATCCAAA 5759 Query 6741 CGGGGAATTCTTTGACAAACACGACCAACCTGAGGGTTTGCTGGGAGGGCCAAGCCGGCG 6800 | | | || |||| || || ||||||||| | || || || || | Sbjct 5760 GAGAAGACACCTTCCTCAACAAGATTGGAGAGATTGTTTGCTGGAACGGACAGGCTGGTG 5819 Query 6801 GTCTGGAAGGTTTGCGGCAGAAGGGATGGAGCATTTTGAA------CCTACTGG----TG 6850 ||||||| || | | ||||||||||||||| || |||| | | |||| || Sbjct 5820 GTCTGGAGGGGCTCTGCCAGAAGGGATGGAGCGTTCTGAATTATCTCATTCTGGATGATG 5879 Query 6851 ATTCAAAGAGAAGCCAAAATCCGGAACACCTCAGTGAAAGTTCTAGCACAGGGAGACAAT 6910 | || ||||||| ||| || ||| ||||| || || || || ||||| ||| Sbjct 5880 AGTC--AGAGAAG--AAA------AATACCAATGTGAACGTCCTGGCCCAAGGAGATAAT 5929 Query 6911 CAGGTGATCTGTACCCAGTACAAA 6934 ||||| || |||||||| |||||| Sbjct 5930 CAGGTCATTTGTACCCACTACAAA 5953 >seq263735 Length=2160 Score = 147 bits (162), Expect = 2e-31 Identities = 330/490 (67%), Gaps = 13/490 (3%) Strand=Plus/Plus Query 6452 TTTGTCCCTCTGTTCCACGGACTTACGATGGCAGATGATCTCACATCAGTGATCAAGAAG 6511 |||||||| | || | |||| || ||||| ||||||||||| ||| | |||||| Sbjct 1334 TTTGTCCCGTTATTTGATAGACTAACCATGGCTGATGATCTCACTGAAGTAACTAAGAAG 1393 Query 6512 ATGATGGACAGTTCCTCGGGGCAGGGGTTGACAGATTACTCAGCTGTATGCATAGCCAAT 6571 |||||| | | ||| || || || | ||||||| ||| | || || || || Sbjct 1394 ATGATGAATAATTCTGATGGTCAAGGATGCCCAGATTATTCACGCATCTGTATTGCTAAC 1453 Query 6572 CATATCGACTACGAAAAATGGAACAATCACCAGCGGAAAGAATCCAATGGGCCGGTATTC 6631 || || || || ||||||||| ||||||||| | || || ||||| | ||||| Sbjct 1454 CACATTGATTATACAAAATGGAATAATCACCAGAGAAAGGAGTCCAACAAGTATGTATTT 1513 Query 6632 CGAGTAATGGGCCAATTCTTGGGCTTCCCCAATCTGATATCCAGAACGCACGAATTCTTT 6691 |||| ||||| ||||| || || | ||| | ||||||| | || || ||||| ||| Sbjct 1514 AGAGTGATGGGTCAATTTTTAGGATACCCAAGTCTGATAGAACGGACTCATGAATTTTTT 1573 Query 6692 GAGAAAAGTTTGGTTTATTACAATGGCCGGCCAGATTTGATGAGAGTATCGG--GGAATT 6749 || ||||| | |||||||| | ||| || ||||| ||| ||| | |||| Sbjct 1574 GAAAAAAGCCTTATTTATTACGTAGCCCGTCCGGATTTAATGGTCGTAAGAGACGGAA-- 1631 Query 6750 CTTTGACAAACACGACC---AACCTGAGGGTTTGCTGGGAGGGCCAAGCCGGCGGTCTGG 6806 | || ||||| ||| | | || || || ||| ||||||| || || |||| Sbjct 1632 CCCTGCAAAACAAAACCCCAGAACAGATCGTGTGTTGGAAGGGCCAGAAAGGTGGGCTGG 1691 Query 6807 AAGGTTTGCGGCAGAAGGGATGGAGCATTTTGAACCTACTGGTGATTC---AAAGAGAAG 6863 | || | | ||||| |||||||||||| | || || | |||||| || ||| | Sbjct 1692 AGGGACTCAGACAGAAAGGATGGAGCATTGT-AAATTATT--TGATTCTAGAAGAAGAGG 1748 Query 6864 CCAAAATCCGGAACACCTCAGTGAAAGTTCTAGCACAGGGAGACAATCAGGTGATCTGTA 6923 || || || ||| ||| || ||| |||| || ||||| |||||||| || |||| Sbjct 1749 CCTCAAGAGTAAATACCAAAGTAAATGTTTTAGCCCAAGGAGATAATCAGGTTATTTGTA 1808 Query 6924 CCCAGTACAA 6933 | || || || Sbjct 1809 CTCATTATAA 1818 >seq250369 Length=726 Score = 123 bits (136), Expect = 2e-24 Identities = 253/372 (68%), Gaps = 23/372 (6%) Strand=Plus/Minus Query 6331 CCTT-GTGATTGGACTTAAAGGGAAAGAGAGAGAATTAAAATTGATTGGGCGTTTCTTTT 6389 |||| || ||||| | | ||| |||||| |||| | || | | || | || || Sbjct 492 CCTTAGTCATTGGGTTGAGAGGAAAAGAGGGAGAGATGAAGAGGGTCGGAAGATTTTTCG 433 Query 6390 CTCTCATGTCTTGGAAATTGAGAGAATACTTCGTCATAACCGAGCACCTAATTAAGACTC 6449 |||| ||||||||| | | | | ||||| || |||| ||| | || ||||| | Sbjct 432 CTCTAATGTCTTGGGATCTTCGGGTGTACTTTGTGCTAACAGAGTATCTCATTAAAGAAC 373 Query 6450 ACTTTGTCCCTCTGTTCCACGGACTTACGATGGCAGATGATCTCACATCAGTGATCAAGA 6509 |||||||||| || ||| | ||| | || ||||| ||||||| || ||| | || || Sbjct 372 ACTTTGTCCCCCTATTCAAAGGATTGACAATGGCCAATGATCTGACCGAAGTTACCAGGA 313 Query 6510 AGATGATGGACAGTTCCTCG---GGGCAGGGGTTGACAGATTACTC--AGCTGTATGCAT 6564 | |||| | |||| |||| |||||||| | | |||||||| || | | | || Sbjct 312 AAATGA--AAAAGTTACTCGGACGGGCAGGGTTGTCCCGATTACTCGAAGATCTCT--AT 257 Query 6565 AGCCAATCATATCGACTACGAAAAATGGAACAATCACCAGCGGAAAGAATCCAATGGGCC 6624 ||| ||| | ||||| ||| |||| ||||| ||||| || ||||| || || Sbjct 256 AGCAAATTACATCGATTACAAAAAGTGGAATAATCATCAACGGAAGGAGTC--------- 206 Query 6625 GGTATTCCGAGTAATGGGCCAATTCTTGGGCTTCCCCAATCTGATATCCAGAACGCACGA 6684 | | || || ||||| ||||||||||||| ||| | || || || | || || || Sbjct 205 --TTTACC--GTCATGGGTCAATTCTTGGGCTACCCTACCCTCATTGCCTGCACTCATGA 150 Query 6685 ATTCTTTGAGAA 6696 ||||||||||| Sbjct 149 GTTCTTTGAGAA 138 >seq110009 Length=642 Score = 80.6 bits (88), Expect = 2e-11 Identities = 163/242 (67%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 6332 CTTGTGATTGGACTTAAAGGGAAAGAGAGAGAATTAAAATTGATTGGGCGTTTCTTTTCT 6391 ||||| || ||||| || |||||| | || | ||| ||| || | ||||| | Sbjct 374 CTTGTAATAGGACTCCGTGGTAAAGAGCGCGAGATGAAAAGGATAGGAAGATTCTTCGCC 433 Query 6392 CTCATGTCTTGGAAATTGAGAGAATACTTCGTCATAACCGAGCACCTAATTAAGACTCAC 6451 || ||||| ||| ||| ||||||| || || | ||||| | || || | Sbjct 434 CTAATGTCCTGGGCCTTGCGAGAATATTTTGTTTTGACCGAATTATTGATAAAAAACTTT 493 Query 6452 TTTGTCCCTCTGTTCCACGGACTTACGATGGCAGATGATCTCACATCAGTGATCAAGAAG 6511 ||||| ||| | || | ||||| || ||||| |||||||| || || | |||||| Sbjct 494 TTTGTTCCTTTATTTGATGGACTAACAATGGCCGATGATCTTACTGAGGTCACGAAGAAG 553 Query 6512 ATGATGGACAGTTCCTCGGGGCAGGGGTTGACAGATTACTCAGCTGTATGCATAGCCAAT 6571 |||||| ||| ||| || || |||| |||||||||| | | || ||||||||| Sbjct 554 ATGATGAACAACTCCGATGGTCAAGGGTGCCCAGATTACTCGCGTATCTGTATAGCCAAT 613 Query 6572 CA 6573 || Sbjct 614 CA 615 >seq22788 Length=2006 Score = 78.8 bits (86), Expect = 7e-11 Identities = 78/101 (77%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 5825 TCTTTCCGACACTGGGGTCATCCCTTCATAGATTACACTGAGGGACTCCGTAAGTTGCAT 5884 || ||||| ||||||||||| || ||| | ||||| | |||||||| || ||| ||||| Sbjct 314 TCCTTCCGCCACTGGGGTCACCCATTCCTTGATTATATCGAGGGACTTCGGAAGCTGCAT 255 Query 5885 GAACAAGTGACAATGCCAAAAGTCATCGACCATGCGTATGC 5925 ||||| || || ||| ||||| || ||| | || ||||| Sbjct 254 GAACAGGTTACCATGGGAAAAGATATAGACGACGCCTATGC 214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35615183294784