Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_025384.1 Length=11190 Score E Sequences producing significant alignments: (Bits) Value seq46121 102 6e-18 seq42553 78.8 7e-11 >seq46121 Length=3043 Score = 102 bits (112), Expect = 6e-18 Identities = 199/289 (69%), Gaps = 10/289 (3%) Strand=Plus/Minus Query 6362 ACAGAATATCTCATCAAAGAGTTCTACCTCCCCCTCTTCTCCGGACTCACCATGGCGGAT 6421 || ||||| || |||||||| | | | || || ||| || ||||| ||||||||| Sbjct 1326 ACTGAATACCTAATCAAAGAACATTTCGTTCCACTGTTCCAAGGCCTCACTATGGCGGAT 1267 Query 6422 GACTTCAACACAGTCACCGACAAAATGCTGAAG--TGCAGCGACGGACAAGGGA---CAA 6476 ||| ||| | || || || || |||| | ||| | || ||||| || Sbjct 1266 GACCTCACCGAGGTGACACGGAAGGTGTTGAATAATTCAG--ATGGGCAAGGATGTCCAG 1209 Query 6477 ATGACTACAAAACTGTGACCATTGCCAACCACCTGGACTACACTAAATGGAACAACCACC 6536 || | | ||| | | || |||||| |||||| | |||||| |||||||||||||| | Sbjct 1208 ATTATT-CAAGAATTTG--CATTGCTAACCACATAGACTACGAAAAATGGAACAACCATC 1152 Query 6537 AGCGGGCAGAAGCAAACAATCCGGTATTCAAAGTGATGGGGCAATTCCTGGGGTACCCCA 6596 | ||| |||| | ||| | | || ||| |||||||||| || |||| || ||||| | Sbjct 1151 AACGGAAAGAATCCAACCAACATGTCTTCCAAGTGATGGGCCAGTTCCAAGGATACCCAA 1092 Query 6597 ATCTATTCACCAGGTCCCACGAGATCTTCCAGAAGTCACTGATCTATTA 6645 ||||| |||||||| | || || |||| | ||| ||| | ||||| Sbjct 1091 ATCTAATCACCAGGACTCATGACTTCTTTGAAAAGAGTCTGGTGTATTA 1043 >seq42553 Length=2057 Score = 78.8 bits (86), Expect = 7e-11 Identities = 105/146 (72%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 6278 TTGAGGGTGAAAGAGAGAGAGATTAAGGACATCGGACGCTTCTTCGCGCTCATGAGTTGG 6337 ||||||| ||| ||||||||||| || | ||| | || || || |||||| ||| Sbjct 611 TTGAGGGGGAAGGAGAGAGAGATGAAAAGGGTTGGAAGATTTTTTGCTCTCATGTCCTGG 552 Query 6338 ATGGTGCGGGAGTACTTTGTTATCACAGAATATCTCATCAAAGAGTTCTACCTCCCCCTC 6397 | || ||||||||||| ||||||| || |||||||||||| || | ||||| | Sbjct 551 GATCTTCGAGAGTACTTTGTCCTCACAGAGTACCTCATCAAAGAGCACTTCGTCCCCTTG 492 Query 6398 TTCTCCGGACTCACCATGGCGGATGA 6423 ||| ||| | || ||||| || || Sbjct 491 TTCAAAGGATTAACAATGGCCGACGA 466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35576907976896