Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_025387.1 Length=11492 Score E Sequences producing significant alignments: (Bits) Value seq263735 217 1e-52 seq22788 214 1e-51 seq36779 156 3e-34 seq46121 131 1e-26 seq42553 91.5 1e-14 >seq263735 Length=2160 Score = 217 bits (240), Expect = 1e-52 Identities = 484/710 (68%), Gaps = 36/710 (5%) Strand=Plus/Plus Query 6506 GTCCTTGAGACTTTCTTGAACAAACCGGCTACCAACTGGCCGGAGTTTTTGCAGAACATC 6565 || ||||| || || | || ||| ||||| || ||| | ||||||||| | | Sbjct 1126 GTGCTTGACACCCTCGTAGACTCACCTGCTACAAATTGGAAACAATTTTTGCAGGAGGTT 1185 Query 6566 AACGACAATGGGCTCCCATGGGAGTCTCTGGTGATCGGGCTAAAACCAAAAGAAAGAGAA 6625 || |||||||| || || |||||||| || || || || | ||||| | ||| Sbjct 1186 AATGACAATGGCCTGCCCGATGAGTCTCTAGTTATAGGACTCCGAGGTAAAGAGCGGGAA 1245 Query 6626 TTGAAGCTGGTGGGTAGGTTCTTCTCGTTGATGTCATGGGAGCTCAGGGAGTACTTTGTG 6685 ||||| | ||||| || || | || |||||||||| | | ||||| |||||| Sbjct 1246 ATGAAGAGAATAGGTAGATTTTTTACCTTAATGTCATGGGCCTTACGTGAGTATTTTGTG 1305 Query 6686 GTGACTGAGTATCTGATCAAGAAGCATTTT-GTCCCTTTGTTTAAGGGGTTGGCCATGGC 6744 |||| || | | | || || || | |||| ||||| || ||| | | | ||||||| Sbjct 1306 TTGACCGAATTTTTAATAAAAAAACTTTTTTGTCCCGTTATTTGATAGACTAACCATGGC 1365 Query 6745 TGATGACCTGACAGAGGTGATAAAAAAGATGCTGGACAGTGCATATGGCCAGGGACTGGA 6804 |||||| || || || || | || |||||| || | | | | |||| || ||| || Sbjct 1366 TGATGATCTCACTGAAGTAACTAAGAAGATGATGAATAATTCTGATGGTCAAGGA-TGCC 1424 Query 6805 C-GACTA--CAGTGCAGTGTGTATTGCCAACCACATTGATTATGAGAAGTGGAACAACCA 6861 | || || || ||| | |||||||| ||||||||||||||| || ||||| || || Sbjct 1425 CAGATTATTCAC-GCA-TCTGTATTGCTAACCACATTGATTATACAAAATGGAATAATCA 1482 Query 6862 CCAGAGGAAGGAGTCCAACAGATATGTATTCAGAGTTATGGGTCAATGTTTGGGGTACCC 6921 |||||| ||||||||||||| |||||||| ||||| |||||||||| ||| || ||||| Sbjct 1483 CCAGAGAAAGGAGTCCAACAAGTATGTATTTAGAGTGATGGGTCAATTTTTAGGATACCC 1542 Query 6922 TAACTTGATTGAACGGACTCATGAGTTCTTTGAGAACAGTTTGGTTTATTTGAACAT--- 6978 | |||| |||||||||||||| || ||||| || || | |||||| || | Sbjct 1543 AAGTCTGATAGAACGGACTCATGAATTTTTTGAAAAAAGCCTTATTTATT---ACGTAGC 1599 Query 6979 GAGACCAGATGAGATGGTGGT---CGATGGTAGACATGTTCGA------CCGAGAGGGGA 7029 | || ||| ||||| || || || | | || | || ||| | Sbjct 1600 CCGTCCGGATTTAATGGTCGTAAGAGACGG-AACCCTGCAAAACAAAACCCCAGA----A 1654 Query 7030 CATGATGTCCTGTTGGGAGGGACAAGCAGGTGGTCTGGAAGGGCTGAGGCAGAAGGGGTG 7089 || ||| |||||| |||| || |||||| ||||| || || || ||||| || || Sbjct 1655 CA-GATCGTGTGTTGGAAGGGCCAGAAAGGTGGGCTGGAGGGACTCAGACAGAAAGGATG 1713 Query 7090 GAGCATCCTCA---ACCTGCTTCTGATCAGAAG-GATCTCaaaaatccgaaatacaaaaa 7145 |||||| | | | || |||| | ||||| | ||||| | | |||||| ||| Sbjct 1714 GAGCATTGTAAATTATTTGATTCT-AGAAGAAGAGGCCTCAAGAGT---AAATACCAAAG 1769 Query 7146 taaaaatATTGGCGCAAGGGGACAATCAGGTCATCTGTACACAGTACAAG 7195 |||| | || || ||||| || |||||||| || ||||| || || ||| Sbjct 1770 TAAATGTTTTAGCCCAAGGAGATAATCAGGTTATTTGTACTCATTATAAG 1819 >seq22788 Length=2006 Score = 214 bits (236), Expect = 1e-51 Identities = 268/365 (73%), Gaps = 2/365 (1%) Strand=Plus/Minus Query 6533 GCTACCAACTGGCCGGAGTTTTTGCAGAACATCAACGACAATGGGCTCCCATGGGAGTCT 6592 ||||| || ||| |||||| | || ||||||| ||||| || || | | | | Sbjct 1870 GCTACGAATTGGAAGGAGTTCCTTCAAGACATCAATGACAACGG-CTTAGACGAAAATTA 1812 Query 6593 CT-GGTGATCGGGCTAAAACCAAAAGAAAGAGAATTGAAGCTGGTGGGTAGGTTCTTCTC 6651 || ||| ||||| |||| | |||||| ||||| ||||| | | || || | ||| | Sbjct 1811 CTTGGTTATCGGACTAAGAGGGAAAGAACGAGAAATGAAGAGGATCGGAAGATATTTCGC 1752 Query 6652 GTTGATGTCATGGGAGCTCAGGGAGTACTTTGTGGTGACTGAGTATCTGATCAAGAAGCA 6711 || ||||||||| | ||| | |||||||||||| | || |||||||||||||||||| | Sbjct 1751 CTTAATGTCATGGAAACTCCGTGAGTACTTTGTGATCACAGAGTATCTGATCAAGAAGTA 1692 Query 6712 TTTTGTCCCTTTGTTTAAGGGGTTGGCCATGGCTGATGACCTGACAGAGGTGATAAAAAA 6771 || ||| || || || |||||| | | |||||||| || || || |||||||| ||||| Sbjct 1691 TTATGTTCCGTTATTCAAGGGGCTAACAATGGCTGACGATCTAACCGAGGTGATGAAAAA 1632 Query 6772 GATGCTGGACAGTGCATATGGCCAGGGACTGGACGACTACAGTGCAGTGTGTATTGCCAA 6831 |||| || || | || |||| || ||| | ||||||| ||| || || || || Sbjct 1631 GATGATGAACCATTCAGATGGTCAAGGATGTGCAGACTACACCAGAGTCTGCATAGCGAA 1572 Query 6832 CCACATTGATTATGAGAAGTGGAACAACCACCAGAGGAAGGAGTCCAACAGATATGTATT 6891 ||| || ||||| |||||||||||||||||| ||| || |||||||| | | || || Sbjct 1571 CCATATAGATTACACCAAGTGGAACAACCACCAGCGGATGGCGTCCAACAAACACGTTTT 1512 Query 6892 CAGAG 6896 ||||| Sbjct 1511 CAGAG 1507 >seq36779 Length=13892 Score = 156 bits (172), Expect = 3e-34 Identities = 423/640 (66%), Gaps = 52/640 (8%) Strand=Plus/Plus Query 6564 TCAACGACAATGGGCT--CCCATGGGAGTCTCTGGTGATCGGGCTAAAACCAAAAGAAAG 6621 |||| ||| ||||| | |||| ||| ||||| || || || || | ||||| || Sbjct 5356 TCAATGACCATGGGTTGTCCCA--GGACTCTCTTGTCATTGGACTCAGGGGGAAAGAGAG 5413 Query 6622 AGAATTGAAGCTGGTGGGTAGGTTCTTCTCGTTGATGTCATGGGAGCTCAGGGAGTACTT 6681 || |||| | |||| |||| || | | ||||| |||||| | | || ||||| Sbjct 5414 GGAGATGAAAAGAGCGGGTCGGTTTTTAGCACTTATGTCCTGGGAGTTGCGAGAATACTT 5473 Query 6682 TGTGGTGACTGAGTATCTGATCAAGAAGCATTTTGTCCCTTTGTTTAAGGGGTTGGCCAT 6741 ||| | || || ||||| |||||| |||| |||||||| || |||||||| || | || Sbjct 5474 CGTGATTACAGAATATCTTATCAAGGAGCACTTTGTCCCATTATTTAAGGGTCTGACTAT 5533 Query 6742 GGCTGATGACCTGACAGAGGTGATAAAAAAGATGCTGGACAGTGCATATGGCCAGGGACT 6801 ||| |||||| || |||| |||| |||| | || |||| Sbjct 5534 GGCCGATGACT---CA------ATAACTCCGATG---GACAAGGG---TGTCCAG----- 5573 Query 6802 GGACGACTACAGTGCAGTGTGTATTGCCAACCACATTGATTATGAGAAGTGGAACAACCA 6861 |||| | | | | ||| | || || || || || ||||| || ||||||||||| Sbjct 5574 -----ACTATACTAAAATCTGTGTAGCGAATCATATCGACTATGAAAAATGGAACAACCA 5628 Query 6862 CCAGAGGAAGGAGTCCAACAGATATGTATTCAGAGTTATGGGTCAATGTTTGGGGTACCC 6921 | ||||| |||||||||| | || ||||| || | |||||| ||||| Sbjct 5629 TAAC---------TCCAATCAATATGTATTCCGTGTCATGGGCCAGTTTTTGGGTTACCC 5679 Query 6922 TAACTTGATTGAACGGACTCATGAGTTCTTTGAGAACAGTTTGGTTTATTTGAACATGAG 6981 | | | ||||||||||| ||||| ||||||||||| ||||| |||||| | | Sbjct 5680 TCATCTAATTGAACGGACCCATGAATTCTTTGAGAAAAGTTTAATTTATTACGTCGGTCG 5739 Query 6982 ACCAGATGAGATGGTGGTCGATG-GTAGACATGTTC--GACCGAGAGGGGACATGATGTC 7038 || ||| |||| | | | | | ||||| ||| | | ||| ||| | ||| Sbjct 5740 TCCCGATCTGATGAT--CCAAAGAGAAGACACCTTCCTCAACAAGATTGGAGA-GATTGT 5796 Query 7039 CTGTTGGGAGGGACAAGCAGGTGGTCTGGAAGGGCTGAGGCAGAAGGGGTGGAGCATCCT 7098 || ||| | ||||| || ||||||||||| ||||| | |||||||| |||||| | || Sbjct 5797 TTGCTGGAACGGACAGGCTGGTGGTCTGGAGGGGCTCTGCCAGAAGGGATGGAGCGTTCT 5856 Query 7099 CA---ACCTGCTTCT-GATCAGAAGGATCTCaaaaatccgaaatacaaaaataaaaatAT 7154 | | || |||| ||| | || ||| | | |||||| || | || | Sbjct 5857 GAATTATCTCATTCTGGATGATGAG----TCAGAGAAGAAAAATACCAATGTGAACGTCC 5912 Query 7155 TGGCGCAAGGGGACAATCAGGTCATCTGTACACAGTACAA 7194 |||| ||||| || ||||||||||| ||||| || ||||| Sbjct 5913 TGGCCCAAGGAGATAATCAGGTCATTTGTACCCACTACAA 5952 >seq46121 Length=3043 Score = 131 bits (144), Expect = 1e-26 Identities = 300/448 (67%), Gaps = 8/448 (2%) Strand=Plus/Minus Query 6525 ACAAACCGGCTACCAACTGGCCGGAGTTTTTGCAGAACATCAACGACAATGGGCTCCCAT 6584 ||||||| || || |||| || || | |||| || || ||| | || || || Sbjct 1484 ACAAACCTGCCACAGTCTGGAAAGACTTCCTCCAGAGGATTAATGACGAGGGACTTCCTG 1425 Query 6585 GGGAGTCTCTGGTGATCGGGCTAAAACCAAAAGAAAGAGAATTGAAGCTGGTGGGTAGGT 6644 || ||||| || ||||| | | |||||| | || ||||||| ||| || | | Sbjct 1424 AAGACTCTCTAGTCATCGGATTGAGGAGAAAAGAGCGGGACTTGAAGCGGGTCGGGCGTT 1365 Query 6645 TCTTCTCGTTGATGTCATGGGAGCTCAGGGAGTACTTTGTGGTGACTGAGTATCTGATCA 6704 | || ||| | ||||| | || || || || || || || ||||| || || |||| Sbjct 1364 TTTT----TTGCTCTCATG--ACCTGAGAGAATATTTCGTCGTTACTGAATACCTAATCA 1311 Query 6705 AGAAGCATTTTGTCCCTTTGTTTAAGGGGTTGGCCATGGCTGATGACCTGACAGAGGTGA 6764 | | ||||| || || |||| | || | | ||||| |||||||| || ||||||| Sbjct 1310 AAGAACATTTCGTTCCACTGTTCCAAGGCCTCACTATGGCGGATGACCTCACCGAGGTGA 1251 Query 6765 TAAAAAAGATGCTGGACAGTGCATATGGCCAGGGACTGGAC-GACTACAGTGCAGTGTGT 6823 | ||| || || | | | || |||| || ||| || | || || | | || Sbjct 1250 CACGGAAGGTGTTGAATAATTCAGATGGGCAAGGA-TGTCCAGATTATTCAAGAATTTGC 1192 Query 6824 ATTGCCAACCACATTGATTATGAGAAGTGGAACAACCACCAGAGGAAGGAGTCCAACAGA 6883 ||||| |||||||| || || || || ||||||||||| || |||| || |||||| | Sbjct 1191 ATTGCTAACCACATAGACTACGAAAAATGGAACAACCATCAACGGAAAGAATCCAACCAA 1132 Query 6884 TATGTATTCAGAGTTATGGGTCAATGTTTGGGGTACCCTAACTTGATTGAACGGACTCAT 6943 |||| ||| ||| ||||| || | || ||||| || | || |||||||| Sbjct 1131 CATGTCTTCCAAGTGATGGGCCAGTTCCAAGGATACCCAAATCTAATCACCAGGACTCAT 1072 Query 6944 GAGTTCTTTGAGAACAGTTTGGTTTATT 6971 || |||||||| || ||| |||| |||| Sbjct 1071 GACTTCTTTGAAAAGAGTCTGGTGTATT 1044 >seq42553 Length=2057 Score = 91.5 bits (100), Expect = 1e-14 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 6614 AAAGAAAGAGAATTGAAGCTGGTGGGTAGGTTCTTCTCGTTGATGTCATGGGAGCTCAGG 6673 || || ||||| |||| ||| || || || || | | ||||| ||||| || | Sbjct 602 AAGGAGAGAGAGATGAAAAGGGTTGGAAGATTTTTTGCTCTCATGTCCTGGGATCTTCGA 543 Query 6674 GAGTACTTTGTGGTGACTGAGTATCTGATCAAGAAGCATTTTGTCCCTTTGTTTAAGGGG 6733 ||||||||||| | || ||||| || ||||| |||| || ||||| ||||| || || Sbjct 542 GAGTACTTTGTCCTCACAGAGTACCTCATCAAAGAGCACTTCGTCCCCTTGTTCAAAGGA 483 Query 6734 TTGGCCATGGCTGATGACCTGACAGAGGTGATAAAAAAGATGCTGGACAGTGCATATGGC 6793 || | ||||| || || ||||| ||||| | || |||||| || ||| | || | || Sbjct 482 TTAACAATGGCCGACGATCTGACTGAGGTTACAAGGAAGATGATGAACAATTCAAACGGA 423 Query 6794 CAGGG 6798 || || Sbjct 422 CAAGG 418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 36540170143744