Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_025392.1 Length=11121 Score E Sequences producing significant alignments: (Bits) Value seq263735 232 5e-57 seq36779 156 3e-34 seq46121 138 8e-29 seq22788 111 1e-20 seq250369 105 5e-19 seq110009 98.7 7e-17 seq120848 78.8 7e-11 >seq263735 Length=2160 Score = 232 bits (256), Expect = 5e-57 Identities = 422/612 (69%), Gaps = 8/612 (1%) Strand=Plus/Plus Query 6268 ATCGGACTCAAAGGAAAAGAGAGAGAATTGAAGATTGCAGGTAGATTCTTTTCATTGATG 6327 || |||||| ||| |||||| | ||| |||||| ||||||||| ||| | || ||| Sbjct 1219 ATAGGACTCCGAGGTAAAGAGCGGGAAATGAAGAGAATAGGTAGATTTTTTACCTTAATG 1278 Query 6328 TCATGGAAATTGCGAGAATATTTTGTGATAACCGAATATCTGATCAAAACGCATTTT-GT 6386 |||||| || || || ||||||||| | ||||||| | | || |||| | |||| || Sbjct 1279 TCATGGGCCTTACGTGAGTATTTTGTGTTGACCGAATTTTTAATAAAAAAACTTTTTTGT 1338 Query 6387 CCCTCTCTTTTATGGACTCACCATGGCTGATGATATGACTTCAGTCATCAAGAAAATGCT 6446 ||| | ||| || |||| ||||||||||||||| | ||| ||| | ||||| ||| | Sbjct 1339 CCCGTTATTTGATAGACTAACCATGGCTGATGATCTCACTGAAGTAACTAAGAAGATGAT 1398 Query 6447 AGAAAGTTCATCCGGTCAAGGGTTGAATGACTATTCTGCAATCTCAATCGCAAATCACAT 6506 | | ||| |||||||| | || ||||| |||| || || || ||||| Sbjct 1399 GAATAATTCTGATGGTCAAGGATGCCCAGATTATTCACGCATCTGTATTGCTAACCACAT 1458 Query 6507 AGATTATGAGAAATGGAACAATCACCAGAGAAGAACATCAAACGAACCTGTATTCAAAGT 6566 |||||| |||||||| ||||||||||||| || ||| | |||||| | ||| Sbjct 1459 TGATTATACAAAATGGAATAATCACCAGAGAAAGGAGTCCAACAAGTATGTATTTAGAGT 1518 Query 6567 GATGGGACAATTTCTGGGATATCCAAATTTGATATCACGCACCCATGAATTCTTTGAGAA 6626 |||||| |||||| | ||||| |||| | ||||| ||| || |||||||| ||||| || Sbjct 1519 GATGGGTCAATTTTTAGGATACCCAAGTCTGATAGAACGGACTCATGAATTTTTTGAAAA 1578 Query 6627 GAGTTTGATTTATTATAATGGAAGACCCGATTTGATGAGAGTCCGGAATGGA---GTGGT 6683 || | |||||||| | | || ||||| ||| || | | ||| || Sbjct 1579 AAGCCTTATTTATTACGTAGCCCGTCCGGATTTAATGGTCGTAAGAGACGGAACCCTGCA 1638 Query 6684 TGAGAATTCCTCAGATACTAGA--GTATGTTGGAATGGACAAGCCGGGGGTCTAGAGGGT 6741 | || || |||| || ||| || |||||||| || || || || || ||||| Sbjct 1639 AAACAAAACCCCAGA-AC-AGATCGTGTGTTGGAAGGGCCAGAAAGGTGGGCTGGAGGGA 1696 Query 6742 TTGAGACAGAAGGGCTGGAGCATCCTAAATTTGTTGGTTATACAGAGGGAATCCAAAATC 6801 | |||||||| || |||||||| |||||| ||| || || | || || || Sbjct 1697 CTCAGACAGAAAGGATGGAGCATTGTAAATTATTTGATTCTAGAAGAAGAGGCCTCAAGA 1756 Query 6802 CGTAATACATCTGTCAAGGTATTGGCACAAGGAGACAATCAAGTAATTTGTACCCAATAC 6861 ||||| || || || || || |||||||| ||||| || |||||||| || || Sbjct 1757 GTAAATACCAAAGTAAATGTTTTAGCCCAAGGAGATAATCAGGTTATTTGTACTCATTAT 1816 Query 6862 AAGACTAAACAA 6873 |||| ||||| Sbjct 1817 AAGAGGCAACAA 1828 >seq36779 Length=13892 Score = 156 bits (172), Expect = 3e-34 Identities = 397/605 (66%), Gaps = 52/605 (9%) Strand=Plus/Plus Query 6268 ATCGGACTCAAAGGAAAAGAGAGAGAATTGAAGATTGCAGGTAGATTCTTTTCATTGATG 6327 || ||||||| || |||||||| || |||| | || ||| | || || || | ||| Sbjct 5391 ATTGGACTCAGGGGGAAAGAGAGGGAGATGAAAAGAGCGGGTCGGTTTTTAGCACTTATG 5450 Query 6328 TCATGGAAATTGCGAGAATATTTTGTGATAACCGAATATCTGATCAAAACGCATTTTGTC 6387 || ||| | ||||||||||| || ||||| || |||||||| ||||| ||| |||||| Sbjct 5451 TCCTGGGAGTTGCGAGAATACTTCGTGATTACAGAATATCTTATCAAGGAGCACTTTGTC 5510 Query 6388 CCTCTCTTTTATGGACTCACCATGGCTGATGATATGACTTCAGTCATCAAGAAAATGCTA 6447 || | ||| | || || || ||||| ||||| |||| || Sbjct 5511 CCATTATTTAAGGGTCTGACTATGGCCGATGA-------------CTCAATAA------- 5550 Query 6448 GAAAGTTCATCCGGTCAAGGGTTGAATGACTATTCTGCAATCTCAATCGCAAATCACATA 6507 || || ||||||| |||||| || ||||| | || ||||| || Sbjct 5551 -----CTCCGATGGACAAGGGTGTCCAGACTATACTAAAATCTGTGTAGCGAATCATATC 5605 Query 6508 GATTATGAGAAATGGAACAATCACCAGAGAAGAACATCAAACGAACCTGTATTCAAAGTG 6567 || ||||| ||||||||||| | | ||| || || || ||||||| || Sbjct 5606 GACTATGAAAAATGGAACAACC--------ATAAC-TCCAATCAATATGTATTCCGTGTC 5656 Query 6568 ATGGGACAATTTCTGGGATATCCAAATTTGATATCACGCACCCATGAATTCTTTGAGAAG 6627 ||||| || ||| |||| || || || | || ||| |||||||||||||||||||| Sbjct 5657 ATGGGCCAGTTTTTGGGTTACCCTCATCTAATTGAACGGACCCATGAATTCTTTGAGAAA 5716 Query 6628 AGTTTGATTTATTATAATGGAAGACCCGATTTGATGAGAGTCCGGAATGGAGTGGTTGAG 6687 ||||| |||||||| || | |||||| |||||| ||| || | | || Sbjct 5717 AGTTTAATTTATTACGTCGGTCGTCCCGATCTGATGA---TCC--AAAG----AGAAGAC 5767 Query 6688 A-ATTCCTC----AGATACTAGA----GTATGTTGGAATGGACAAGCCGGGGGTCTAGAG 6738 | |||||| |||| ||| || || ||||| ||||| || || ||||| ||| Sbjct 5768 ACCTTCCTCAACAAGATTGGAGAGATTGTTTGCTGGAACGGACAGGCTGGTGGTCTGGAG 5827 Query 6739 GGTTTGAGACAGAAGGGCTGGAGCATCCTAAATTTGTTGGTTATACAGAGGGAATCCAAA 6798 || | | |||||||| |||||| | || |||| | || | | || || | Sbjct 5828 GGGCTCTGCCAGAAGGGATGGAGCGTTCTGAATTATCTCATTCTGGATGATGAGTCAGAG 5887 Query 6799 ATCCGTAATACATCTGTCAAGGTATTGGCACAAGGAGACAATCAAGTAATTTGTACCCAA 6858 | ||||| ||| || || |||| |||||||| ||||| || ||||||||||| Sbjct 5888 AAGAAAAATACCAATGTGAACGTCCTGGCCCAAGGAGATAATCAGGTCATTTGTACCCAC 5947 Query 6859 TACAA 6863 ||||| Sbjct 5948 TACAA 5952 >seq46121 Length=3043 Score = 138 bits (152), Expect = 8e-29 Identities = 269/396 (68%), Gaps = 6/396 (2%) Strand=Plus/Minus Query 6268 ATCGGACTCAAAGGAAAAGAGAGAGAATTGAAGATTGCAGGTAGATTCTTTTCATTGATG 6327 |||||| | | |||||||| | || |||||| | ||| | |||| ||| | Sbjct 1410 ATCGGATTGAGGAGAAAAGAGCGGGACTTGAAG----CGGGTCGGGCGTTTTTTTTGCTC 1355 Query 6328 TCATGGAAATTGCGAGAATATTTTGTGATAACCGAATATCTGATCAAAACGCATTTTGTC 6387 ||||| | || |||||||||| || | || ||||| || |||||| ||||| || Sbjct 1354 TCATG--ACCTGAGAGAATATTTCGTCGTTACTGAATACCTAATCAAAGAACATTTCGTT 1297 Query 6388 CCTCTCTTTTATGGACTCACCATGGCTGATGATATGACTTCAGTCATCAAGAAAATGCTA 6447 || || || | || ||||| ||||| ||||| | || || | ||| || | Sbjct 1296 CCACTGTTCCAAGGCCTCACTATGGCGGATGACCTCACCGAGGTGACACGGAAGGTGTTG 1237 Query 6448 GAAAGTTCATCCGGTCAAGGGTTGAATGACTATTCTGCAATCTCAATCGCAAATCACATA 6507 | | |||| || ||||| | || ||||| ||| | || || || |||||| Sbjct 1236 AATAATTCAGATGGGCAAGGATGTCCAGATTATTCAAGAATTTGCATTGCTAACCACATA 1177 Query 6508 GATTATGAGAAATGGAACAATCACCAGAGAAGAACATCAAACGAACCTGTATTCAAAGTG 6567 || || || ||||||||||| || || | | | ||| ||| ||| ||| ||| ||||| Sbjct 1176 GACTACGAAAAATGGAACAACCATCAACGGAAAGAATCCAACCAACATGTCTTCCAAGTG 1117 Query 6568 ATGGGACAATTTCTGGGATATCCAAATTTGATATCACGCACCCATGAATTCTTTGAGAAG 6627 ||||| || || | ||||| |||||| | || | | || ||||| |||||||| ||| Sbjct 1116 ATGGGCCAGTTCCAAGGATACCCAAATCTAATCACCAGGACTCATGACTTCTTTGAAAAG 1057 Query 6628 AGTTTGATTTATTATAATGGAAGACCCGATTTGATG 6663 ||| || | |||||| ||||| ||| || || ||| Sbjct 1056 AGTCTGGTGTATTATGTTGGAATACCAGACTTAATG 1021 >seq22788 Length=2006 Score = 111 bits (122), Expect = 1e-20 Identities = 209/305 (69%), Gaps = 2/305 (1%) Strand=Plus/Minus Query 6262 TTGATAATCGGACTCAAAGGAAAAGAGAGAGAATTGAAGATTGCAGGTAGATTCTTTTCA 6321 ||| | |||||||| | ||| ||||| ||||| |||||| || |||| || | Sbjct 1810 TTGGTTATCGGACTAAGAGGGAAAGAACGAGAAATGAAGAGGATCGGAAGATATTTCGCC 1751 Query 6322 TTGATGTCATGGAAATTGCGAGAATATTTTGTGATAACCGAATATCTGATCAAAACGCAT 6381 || |||||||||||| | || || || |||||||| || || ||||||||||| | | || Sbjct 1750 TTAATGTCATGGAAACTCCGTGAGTACTTTGTGATCACAGAGTATCTGATCAAGAAGTAT 1691 Query 6382 TTTGTCCCTCTCTTTTATGGACTCACCATGGCTGATGATATGACTTCAGTCATCAAGAAA 6441 | ||| || | || | || || || |||||||| ||| | || || || || || Sbjct 1690 TATGTTCCGTTATTCAAGGGGCTAACAATGGCTGACGATCTAACCGAGGTGATGAAAAAG 1631 Query 6442 ATGCTAGAAAGTTCATCCGGTCAAGGGT-TGAATGACTATTCTGCAATCTCAATCGCAAA 6500 ||| | | |||| |||||||| | || | ||||| | | ||| || || || Sbjct 1630 ATGATGAACCATTCAGATGGTCAAGGATGTGCA-GACTACACCAGAGTCTGCATAGCGAA 1572 Query 6501 TCACATAGATTATGAGAAATGGAACAATCACCAGAGAAGAACATCAAACGAACCTGTATT 6560 || |||||||| || |||||||| |||||| | | | || ||| ||| || || Sbjct 1571 CCATATAGATTACACCAAGTGGAACAACCACCAGCGGATGGCGTCCAACAAACACGTTTT 1512 Query 6561 CAAAG 6565 || || Sbjct 1511 CAGAG 1507 >seq250369 Length=726 Score = 105 bits (116), Expect = 5e-19 Identities = 236/353 (67%), Gaps = 20/353 (6%) Strand=Plus/Minus Query 6279 AGGAAAAGAGAGAGAATTGAAGATTGCAGGTAGATTCTTTTCATTGATGTCATGGAAATT 6338 |||||||||| |||| |||||| | || ||||| || | | ||||| ||| | | Sbjct 473 AGGAAAAGAGGGAGAGATGAAGAGGGTCGGAAGATTTTTCGCTCTAATGTCTTGGGATCT 414 Query 6339 GCGAGAATATTTTGTGATAACCGAATATCTGATCAAAACGCATTTTGTCCCTCTCTTTTA 6398 || | || |||||| |||| || ||||| || ||| || |||||||| || || | Sbjct 413 TCGGGTGTACTTTGTGCTAACAGAGTATCTCATTAAAGAACACTTTGTCCCCCTATTCAA 354 Query 6399 TGGACTCACCATGGCTGATGATATGACTTCAGTCATCAAGAAAATGCTAGAAAGTTCATC 6458 ||| | || ||||| ||||| |||| ||| | || ||||||| | |||||| || Sbjct 353 AGGATTGACAATGGCCAATGATCTGACCGAAGTTACCAGGAAAATG--AAAAAGTTACTC 296 Query 6459 ---CGGTCAAGGGTTGAAT-GACTATTCTGCAATCTCAATCGCAAATCACATAGATTATG 6514 ||| || |||||| || || || ||||| || |||||| |||| ||||| Sbjct 295 GGACGGGCA-GGGTTGTCCCGATTACTCGAAGATCTCTATAGCAAATTACATCGATTACA 237 Query 6515 AGAAATGGAACAATCACCAGAGAAGAACATCAAACGAACCTGTATTCAAAGTGATGGGAC 6574 | || ||||| ||||| |||| ||| || || | || ||||| | Sbjct 236 AAAAGTGGAATAATCA-------------TCAACGGAAGGAGTCTTTACCGTCATGGGTC 190 Query 6575 AATTTCTGGGATATCCAAATTTGATATCACGCACCCATGAATTCTTTGAGAAG 6627 |||| |||| || || | | || | |||| ||||| |||||||||||| Sbjct 189 AATTCTTGGGCTACCCTACCCTCATTGCCTGCACTCATGAGTTCTTTGAGAAG 137 >seq110009 Length=642 Score = 98.7 bits (108), Expect = 7e-17 Identities = 129/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 6266 TAATCGGACTCAAAGGAAAAGAGAGAGAATTGAAGATTGCAGGTAGATTCTTTTCATTGA 6325 |||| |||||| || |||||| | || |||| | ||| |||||||| | | | Sbjct 378 TAATAGGACTCCGTGGTAAAGAGCGCGAGATGAAAAGGATAGGAAGATTCTTCGCCCTAA 437 Query 6326 TGTCATGGAAATTGCGAGAATATTTTGTGATAACCGAATATCTGATCAAAACGCATTTTG 6385 |||| ||| ||||||||||||||||| | ||||||| |||| |||| ||||| Sbjct 438 TGTCCTGGGCCTTGCGAGAATATTTTGTTTTGACCGAATTATTGATAAAAAACTTTTTTG 497 Query 6386 TCCCTCTCTTTTATGGACTCACCATGGCTGATGATATGACTTCAGTCATCAAGAAAATG 6444 | ||| | ||| ||||||| || ||||| |||||| | ||| |||| ||||| ||| Sbjct 498 TTCCTTTATTTGATGGACTAACAATGGCCGATGATCTTACTGAGGTCACGAAGAAGATG 556 >seq120848 Length=1229 Score = 78.8 bits (86), Expect = 7e-11 Identities = 159/236 (67%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 6313 TTCTTTTCATTGATGTCATGGAAATTGCGAGAATATTTTGTGATAACCGAATATCTGATC 6372 || ||| || |||| ||||| | ||| | ||||| ||||| | || || || ||| Sbjct 682 TTTTTTGCACCGATGACATGGGAGTTGAGGGAATACTTTGTAACCACTGAGTA----ATC 627 Query 6373 AAAACGCATTTTGTCCCTCTCTTTTATGGACTCACCATGGCTGATGATATGACTTCAGTC 6432 ||| |||||| ||| |||||| |||| | | ||||| ||| | | ||| || Sbjct 626 AAACAAAATTTTGACCCCCTCTTTGATGGTTTGATTATGGCCGATAACCTTACTGAGGTT 567 Query 6433 ATCAAGAAAATGCTAGAAAGTTCATCCGGTCAAGGGTTGAATGACTATTCTGCAATCTCA 6492 | ||||| ||| || | ||| || |||| || ||| || ||| | | Sbjct 566 AATAAGAAGATGTTACACGACTCAGACGAACAAGAGTATTCTGATTACTCTCGTGTTTGT 507 Query 6493 ATCGCAAATCACATAGATTATGAGAAATGGAACAATCACCAGAGAAGAACATCAAA 6548 | | ||||||||||| |||||||| |||||||||| ||| || | ||||||||| Sbjct 506 ACAGTCAATCACATAGAGTATGAGAAGTGGAACAATCGCCAAAGGAAAACATCAAA 451 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35356824899040