Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_025394.1 Length=11103 Score E Sequences producing significant alignments: (Bits) Value seq263735 262 3e-66 seq36779 181 7e-42 seq46121 174 1e-39 seq250369 134 1e-27 seq22788 91.5 1e-14 >seq263735 Length=2160 Score = 262 bits (290), Expect = 3e-66 Identities = 666/992 (67%), Gaps = 36/992 (4%) Strand=Plus/Plus Query 6192 TCCCCTGCAACAAATTGGATTGAATTCTTGGACATGGTCGATAAAGAAGGATTGCCGGAA 6251 || ||||| |||||||||| |||| ||| | ||| || | | || |||| || Sbjct 1147 TCACCTGCTACAAATTGGAAACAATTTTTGCAGGAGGTTAATGACAATGGCCTGCCCGAT 1206 Query 6252 GATGATCTGGTAATTGGACTCAAAGGGAAGGAAAGGGAGTTGAAGATCGCAGGTCGATTC 6311 || ||| || || |||||| ||| || || |||| |||||| |||| |||| Sbjct 1207 GAGTCTCTAGTTATAGGACTCCGAGGTAAAGAGCGGGAAATGAAGAGAATAGGTAGATTT 1266 Query 6312 TTTTCGTTAATGTCTTGGAGATTACGGGAATACTTTGTAATTACTGAGTATTTGATTAAA 6371 ||| | |||||||| ||| ||||| || || ||||| | || || | ||| || ||| Sbjct 1267 TTTACCTTAATGTCATGGGCCTTACGTGAGTATTTTGTGTTGACCGAATTTTTAATAAAA 1326 Query 6372 ACACACTTT-GTTCCGTTATTTCATGGATTGACTATGGCAGATGATATGACGGCTGTGAT 6430 | || ||| || ||||||||| || || | || ||||| |||||| | || | || | Sbjct 1327 AAACTTTTTTGTCCCGTTATTTGATAGACTAACCATGGCTGATGATCTCACTGAAGTAAC 1386 Query 6431 CaaaaaaaTGATGGAGAGTTCATCAGGTCAGGGTCTCAACGATTATTCTTCAATATGTCT 6490 || || |||||| | | ||| ||||| || | |||||||| || ||| | Sbjct 1387 TAAGAAGATGATGAATAATTCTGATGGTCAAGGATGCCCAGATTATTCACGCATCTGTAT 1446 Query 6491 GGCTAATCACATTGATTATGAGAAATGGAACAATCATCAGAGAAAAGAGTCAAATGGACC 6550 ||||| |||||||||||| |||||||| ||||| |||||||| ||||| || Sbjct 1447 TGCTAACCACATTGATTATACAAAATGGAATAATCACCAGAGAAAGGAGTCCAACAAGTA 1506 Query 6551 TGTTTTCCGTGTCATGGGTCAGTTCTTGGGATTTCCTAACCTTATATCCAGGACTCATGA 6610 ||| || | || |||||||| || || |||| || | || ||| |||||||||| Sbjct 1507 TGTATTTAGAGTGATGGGTCAATTTTTAGGATACCCAAGTCTGATAGAACGGACTCATGA 1566 Query 6611 ATTCTTTGAAAAAAGTCTGATATATTACAATGGGAGACCAGATTTGAT----GAAAGTGC 6666 ||| ||||||||||| || || |||||| | | || ||||| || | ||| | Sbjct 1567 ATTTTTTGAAAAAAGCCTTATTTATTACGTAGCCCGTCCGGATTTAATGGTCGTAAGAG- 1625 Query 6667 AAGGAA--ATTCATTAGTCAATAACAGCA-ATCAGCGGGTATGTTGGAACGGACAGGCAG 6723 | |||| | || | ||| ||| || | ||| || |||||||| || ||| || Sbjct 1626 ACGGAACCCTGCA--AAACAA-AACCCCAGAACAGATCGTGTGTTGGAAGGGCCAGAAAG 1682 Query 6724 GAGGTTTGGAGGGCTTGAGGCAAAAGGGATGGAGTATTTTGAACCTATTGGTTATCCAGC 6783 | || ||||||| | || || || |||||||| ||| | || ||| || | | Sbjct 1683 GTGGGCTGGAGGGACTCAGACAGAAAGGATGGAGCATTGTAAATTATTTGATTCTAGAAG 1742 Query 6784 GAGAATC--CAAGATCAGAAATACCGCAGTGAAGGTGTTGGCACAGGGTGATAATCAAGT 6841 ||| | ||||| ||||||| ||| || || || || || || |||||||| || Sbjct 1743 AAGAGGCCTCAAGA--GTAAATACCAAAGTAAATGTTTTAGCCCAAGGAGATAATCAGGT 1800 Query 6842 AATCTGTACTCAATACAAGACAAAACAACATCGAAC-TGACCATGAACTACGATCTGC-A 6899 || |||||||| || |||| ||||| ||| | || | | | || | | | Sbjct 1801 TATTTGTACTCATTATAAGAGGCAACAA-GGCGACCAAGATCGT-AGCTTAAACCCACGG 1858 Query 6900 TTGCTCCAAA--TGAAATTAAATAACGATTTCATCATGGAGGCAATTGAACACGGAACTG 6957 ||| || | | || || |||||||||| || | ||| | || || | | || ||| Sbjct 1859 TTGGTCAATATTTGGAA--AAATAACGATATCCTGATGAAAGCGAT--CAGAAGG-GCTG 1913 Query 6958 GA---AAATTAGGACTCTTGATAAACCAGGACGAGACTATGCAATCAGCTGATTATTTGA 7014 | ||| ||||||| | |||||| | |||||||| ||||||| ||| || ||| | Sbjct 1914 CAGATAAAATAGGACTTATAATAAACGAAGACGAGACAATGCAATAAGCAACTTTTTTAA 1973 Query 7015 ATTATGGGAAAGTTCCCATTTTCAGAGGTGTCA---TTAGAGGGTTAGAAACTAAAAGAT 7071 ||||||||||||| | | |||| | || | | | || |||||||| |||| || Sbjct 1974 ATTATGGGAAAGT---CTTGTTCATACTTGGAAATTTAATAGCATTAGAAACAAAAAAAT 2030 Query 7072 GGTCTCGGGTAACATGTGTGACAAATGATCAGTTGCCTACCTGCGCAAACTTAATGTCTT 7131 || ||| ||||| || || || || || ||| | || || | | ||| | |||||| Sbjct 2031 GGAGTCGAGTAACTTGCGTCACCAACGACCAGGTCCCCACTTTGGGAAATATTTTGTCTT 2090 Query 7132 CAGTTTCCACTAATGCGCTCACAGTTGCGCAT 7163 | ||| ||| ||| | || || || || ||| Sbjct 2091 CCGTTGTCACCAATTCCCTAACCGTAGCTCAT 2122 >seq36779 Length=13892 Score = 181 bits (200), Expect = 7e-42 Identities = 406/608 (67%), Gaps = 44/608 (7%) Strand=Plus/Plus Query 6257 TCTGGTAATTGGACTCAAAGGGAAGGAAAGGGAGTTGAAGATCGCAGGTCGATTCTTTTC 6316 ||| || |||||||||| ||||| || |||||| |||| | || ||||| || || | Sbjct 5384 TCTTGTCATTGGACTCAGGGGGAAAGAGAGGGAGATGAAAAGAGCGGGTCGGTTTTTAGC 5443 Query 6317 GTTAATGTCTTGGAGATTACGGGAATACTTTGTAATTACTGAGTATTTGATTAAAACACA 6376 | ||||| ||| || || |||||||| || ||||| || ||| | || || || Sbjct 5444 ACTTATGTCCTGGGAGTTGCGAGAATACTTCGTGATTACAGAATATCTTATCAAGGAGCA 5503 Query 6377 CTTTGTTCCGTTATTTCATGGATTGACTATGGCAGATGATATGACGGCTGTGATCaaaaa 6436 |||||| || |||||| | || |||||||||| ||||| |||| || Sbjct 5504 CTTTGTCCCATTATTTAAGGGTCTGACTATGGCCGATGAC-------------TCAATAA 5550 Query 6437 aaT-GATGGAGAGTTCATCAGGTCAGGGTCTCAACGATTATTCTTCAATATGTCTGGCTA 6495 |||||| | ||||| || | || ||| || ||| ||| | || | Sbjct 5551 CTCCGATGGACA------------AGGGTGTCCA-GACTATACTAAAATCTGTGTAGCGA 5597 Query 6496 ATCACATTGATTATGAGAAATGGAACAATCATCAGAGAAAAGAGTCAAATGGACCTGTTT 6555 |||| || || ||||| ||||||||||| ||| | || ||| | ||| | Sbjct 5598 ATCATATCGACTATGAAAAATGGAACAACCATAAC---------TCCAATCAATATGTAT 5648 Query 6556 TCCGTGTCATGGGTCAGTTCTTGGGATTTCCTAACCTTATATCCAGGACTCATGAATTCT 6615 ||||||||||||| ||||| ||||| | ||| | || || |||| |||||||||| Sbjct 5649 TCCGTGTCATGGGCCAGTTTTTGGGTTACCCTCATCTAATTGAACGGACCCATGAATTCT 5708 Query 6616 TTGAAAAAAGTCTGATATATTACAATGGGAGACCAGATTTGATGAAAGTGCAAGGA-AAT 6674 |||| |||||| | || |||||| || | || ||| |||||| | ||| || || Sbjct 5709 TTGAGAAAAGTTTAATTTATTACGTCGGTCGTCCCGATCTGATGA---TCCAAAGAGAAG 5765 Query 6675 TCA--TTAGTCAATAACAGCAATCAGCGGGTATGTTGGAACGGACAGGCAGGAGGTTTGG 6732 || || |||| || | || || || |||||||||||||| || ||| ||| Sbjct 5766 ACACCTTCCTCAACAAGATTGGAGAGATTGTTTGCTGGAACGGACAGGCTGGTGGTCTGG 5825 Query 6733 AGGGCTTGAGGCAAAAGGGATGGAGTATTTTGAACCTAT-TGGTTATCCAGCGAGAATCC 6791 |||| | | || ||||||||||| || |||| ||| | || | | || || Sbjct 5826 AGGGGCTCTGCCAGAAGGGATGGAGCGTTCTGAA-TTATCTCATTCTGGATGATGAGTCA 5884 Query 6792 AAGATCAGAAATACCGCAGTGAAGGTGTTGGCACAGGGTGATAATCAAGTAATCTGTACT 6851 ||| | ||||||| ||||| || |||| || || |||||||| || || ||||| Sbjct 5885 GAGAAGAAAAATACCAATGTGAACGTCCTGGCCCAAGGAGATAATCAGGTCATTTGTACC 5944 Query 6852 CAATACAA 6859 || ||||| Sbjct 5945 CACTACAA 5952 >seq46121 Length=3043 Score = 174 bits (192), Expect = 1e-39 Identities = 538/815 (66%), Gaps = 47/815 (6%) Strand=Plus/Minus Query 6339 GAATACTTTGTAATTACTGAGTATTTGATTAAAACACACTTTGTTCCGTTATTTCATGGA 6398 ||||| || || ||||||| || | || ||| ||| || ||||| | || || || Sbjct 1341 GAATATTTCGTCGTTACTGAATACCTAATCAAAGAACATTTCGTTCCACTGTTCCAAGGC 1282 Query 6399 TTGACTATGGCAGATGATATGACGGCTGTGATCaaaaaaaTGATGGAGAGTTCATCAGGT 6458 | |||||||| ||||| | || | |||| || || || | | |||| || Sbjct 1281 CTCACTATGGCGGATGACCTCACCGAGGTGACACGGAAGGTGTTGAATAATTCAGATGGG 1222 Query 6459 CAGGG-TCTCAACGATTATTCTTCAATATGTCTGGCTAATCACATTGATTATGAGAAATG 6517 || || | || | |||||||| ||| || | ||||| ||||| || || || ||||| Sbjct 1221 CAAGGATGTCCA-GATTATTCAAGAATTTGCATTGCTAACCACATAGACTACGAAAAATG 1163 Query 6518 GAACAATCATCAGAGAAAAGAGTCAAATGGACCTGTTTTCCGTGTCATGGGTCAGTTCTT 6577 |||||| ||||| | ||||| || || || ||| |||| || ||||| |||||| Sbjct 1162 GAACAACCATCAACGGAAAGAATCCAACCAACATGTCTTCCAAGTGATGGGCCAGTTCCA 1103 Query 6578 GGGATTTCCTAACCTTATATCCAGGACTCATGAATTCTTTGAAAAAAGTCTGATATATTA 6637 |||| || || || || ||||||||||||| ||||||||||| |||||| | ||||| Sbjct 1102 AGGATACCCAAATCTAATCACCAGGACTCATGACTTCTTTGAAAAGAGTCTGGTGTATTA 1043 Query 6638 CAATGGGAGACCAGATTTGATGAAAGTGCAAGGAAAT---TCATTAGTCAATAACAGCAA 6694 ||| | |||||| || ||| | ||| || || | ||| ||||||| | Sbjct 1042 TGTTGGAATACCAGACTTAATG---CTCCAACGAGATGGGACTTTAATCAATAAGGAAAG 986 Query 6695 TCAGCGGGTATGTTGGAACGGACAGGCAGGAGGTTTGGAGGGCTTGAGGCAAAAGGGATG 6754 || || || |||||||| || |||||| | |||| ||| | ||| ||||||| || Sbjct 985 ACACGTTGTCTGCTGGAACGGCCAATCAGGAGATCTGGAAGGCCTCAGGTAAAAGGGCTG 926 Query 6755 GAGTATTTTGAACCTATTGGTTATCC-AG----CGA-GAATCCAAGATCAGAAATACCGC 6808 |||| || | || ||| | |||| || ||| | |||||||| || ||||| Sbjct 925 GAGTGTTCTTAA-TTAT--CTAATCCTAGAAGACGAGGCATCCAAGA--AG-AATACTAA 872 Query 6809 AGTGAAGGTGTTGGCACAGGGTGATAATCAAGTAATCTGTACTCAATA-CAAGACAAAAC 6867 ||| || || | || || || |||| ||||||||||| | ||| || | || Sbjct 871 AGTAAATGTCCTTGCTCAAGGAGATATCCAAGTAATCTGCAATCACTATCGAG------- 819 Query 6868 AACATCGAACTGACCATGAACTACGATCTGC---ATTGCTCCAAATGAAATTAAATAACG 6924 | || | ||| | ||| | ||||| ||| | | ||||| ||| || | Sbjct 818 -GCGTC--AATGATCCTGAGTCCCCTTCTGCTCGATTCCGCGAAATGTGGGCAAACAATG 762 Query 6925 ATTTCATCATGGAGGCAATTGAACACGGAACTGGAAAATTAGGACTCTTGATA---AACC 6981 ||| | | ||| | | ||| |||| | | |||| | || ||||||| ||| Sbjct 761 ATTCCCTAATGAAAGGGATT-----CGGAGCGGCAAAACTCGG---CTTGATAATCAACG 710 Query 6982 AGGACGAGACTATGCAATCAGCTGATTATTTGAATTATGGGAAAGTTCCCATTTTCAGAG 7041 |||| || || |||||||| || ||| | || || ||||| || | | |||| || Sbjct 709 AGGATGAAACGATGCAATCTGCCACATATCTAAACTACGGGAAGGTCCTCTTTTTGCAAG 650 Query 7042 GTGTCATTAGAGGGTTAGAAACTAAAAGATGGTCTCGGGTAACATGTGTGACAAATGATC 7101 | | | | | ||| || |||| |||| |||| || |||||||| | |||| Sbjct 649 GGAACCTAATCGCCCAAGAGACAAAAAAATGGAGCAGGGTCACGTGTGTGACTACAGATC 590 Query 7102 AGTTGCCTACC-TGCGCAAACTTAATGTCTTCAGT 7135 || | |||||| || || ||| | ||||| |||| Sbjct 589 AGATCCCTACCATGGGC-AACATCCTGTCTACAGT 556 >seq250369 Length=726 Score = 134 bits (148), Expect = 1e-27 Identities = 259/378 (69%), Gaps = 22/378 (6%) Strand=Plus/Minus Query 6261 GTAATTGGACTCAAAGGGAAGGAAAGGGAGTTGAAGATCGCAGGTCGATTCTTTTCGTTA 6320 || ||||| | | ||| || || | ||| |||||| | || |||| || | || Sbjct 487 GTCATTGGGTTGAGAGGAAAAGAGGGAGAGATGAAGAGGGTCGGAAGATTTTTCGCTCTA 428 Query 6321 ATGTCTTGGAGAT-TACGGGAATACTTTGTAATTACTGAGTATTTGATTAAAACACACTT 6379 ||||||||| ||| | |||| |||||||| | || |||||| | |||||| |||||| Sbjct 427 ATGTCTTGG-GATCTTCGGGTGTACTTTGTGCTAACAGAGTATCTCATTAAAGAACACTT 369 Query 6380 TGTTCCGTTATTTCATGGATTGACTATGGCAGATGATATGACGGCTGTGATCaaaaaaaT 6439 ||| || |||| | |||||||| ||||| ||||| |||| | || | || ||||| Sbjct 368 TGTCCCCCTATTCAAAGGATTGACAATGGCCAATGATCTGACCGAAGTTACCAGGAAAAT 309 Query 6440 GATGGAGAGTTCATC---AGGTCAGGGTCTCAACGATTATTCTTCAATATGTCTGGCTAA 6496 || | |||| || || |||||| |||||| || || | | | || || Sbjct 308 GA--AAAAGTTACTCGGACGGGCAGGGTTGTCCCGATTACTCGAAGATCTCTATAGCAAA 251 Query 6497 TCACATTGATTATGAGAAATGGAACAATCATCAGAGAAAAGAGTCAAATGGACCTGTTTT 6556 | |||| ||||| | || ||||| |||||||| | || ||||| ||| Sbjct 250 TTACATCGATTACAAAAAGTGGAATAATCATCAACGGAAGGAGTC-----------TTTA 202 Query 6557 CCGTGTCATGGGTCAGTTCTTGGGATTTCCTAACCTTATATCCAGGACTCATGAATTCTT 6616 || ||||||||||| |||||||| | |||| ||| || || | |||||||| ||||| Sbjct 201 CC--GTCATGGGTCAATTCTTGGGCTACCCTACCCTCATTGCCTGCACTCATGAGTTCTT 144 Query 6617 TGAAAAAAGTCTGATATA 6634 || | |||||| || || Sbjct 143 TG--AGAAGTCTCATCTA 128 >seq22788 Length=2006 Score = 91.5 bits (100), Expect = 1e-14 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 6259 TGGTAATTGGACTCAAAGGGAAGGAAAGGGAGTTGAAGATCGCAGGTCGATTCTTTTCGT 6318 |||| || ||||| | |||||| ||| | || |||||| || ||| || | | Sbjct 1809 TGGTTATCGGACTAAGAGGGAAAGAACGAGAAATGAAGAGGATCGGAAGATATTTCGCCT 1750 Query 6319 TAATGTCTTGGAGATTACGGGAATACTTTGTAATTACTGAGTATTTGATTAAAACACACT 6378 ||||||| |||| | | || || |||||||| || || |||||| |||| || | | | Sbjct 1749 TAATGTCATGGAAACTCCGTGAGTACTTTGTGATCACAGAGTATCTGATCAAGAAGTATT 1690 Query 6379 TTGTTCCGTTATTTCATGGATTGACTATGGCAGATGATATGACGGCTGTGATCaaaaaaa 6438 |||||||||||| | || | || ||||| || ||| | || | ||||| ||||| | Sbjct 1689 ATGTTCCGTTATTCAAGGGGCTAACAATGGCTGACGATCTAACCGAGGTGATGAAAAAGA 1630 Query 6439 TGATG 6443 ||||| Sbjct 1629 TGATG 1625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35299411922208