Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_025396.1 Length=15442 Score E Sequences producing significant alignments: (Bits) Value seq263735 120 3e-23 seq46121 87.8 2e-13 >seq263735 Length=2160 Score = 120 bits (132), Expect = 3e-23 Identities = 439/669 (66%), Gaps = 44/669 (7%) Strand=Plus/Plus Query 10515 CCTGCAACAAATTGGCCAGAATTTTTACAAAAAGTGAATGATCATGGATTA---GATTGG 10571 ||||| ||||||||| | ||||||| || | || ||||| |||| | ||| Sbjct 1150 CCTGCTACAAATTGGAAACAATTTTTGCAGGAGGTTAATGACAATGGCCTGCCCGAT--- 1206 Query 10572 GAGAAGTTGGTGATAGGTTTAAAAGCCAAGG-AAAGAGAGCTTAAAGAAGA----AGGTA 10626 ||| | || ||||| | || ||| |||||| | || ||||| ||||| Sbjct 1207 GAGTCTCTAGTTATAGGACT-----CCGAGGTAAAGAGCGGGAAATGAAGAGAATAGGTA 1261 Query 10627 GGTTTTTCTCTTTAATGAGTTATGAG--TTAAGAGACTACTTTGTTGCAACTGAATACTT 10684 | ||||| | |||||| | ||| | ||| | || || ||||| || |||| || Sbjct 1262 GATTTTTTACCTTAATG--TCATGGGCCTTACGTGAGTATTTTGTGTTGACCGAATTTTT 1319 Query 10685 GATTAAGAAA-TATTATGTACCATTGTTTGAAGGACTTACAATGGCAGATGATTTGAACA 10743 || || ||| | || ||| || || ||||| |||| || ||||| |||||| | || Sbjct 1320 AATAAAAAAACTTTTTTGTCCCGTTATTTGATAGACTAACCATGGCTGATGATCT---CA 1376 Query 10744 CTG---TAATTAAAAAGATGCTGGACGTGTCATCCGGTCAAGGAACAAGAAACTATGATT 10800 ||| ||| ||| |||||| || | || ||||||||| | | ||| | Sbjct 1377 CTGAAGTAACTAAGAAGATGATGAATAATTCTGATGGTCAAGGATGCCCAGATTAT--TC 1434 Query 10801 ATGTATCCATA--GCCAACAACATTGATTATGAGAAATGGAATAATTATCAAAGGAAAGA 10858 | | ||| || || ||| ||||||||||| |||||||||||| | || || || || Sbjct 1435 ACGCATCTGTATTGCTAACCACATTGATTATACAAAATGGAATAATCACCAGAGAAAGGA 1494 Query 10859 ATCAAATGGACCGGTATTCAGAGTAATGGGACAATTCCTTGGAATGGAAAATCTTATAGT 10918 || || ||||| ||||| ||||| ||||| | ||| || ||| |||| Sbjct 1495 GTCCAACAAGTATGTATTTAGAGTGATGGGTCAATTTTTAGGATACCCAAGTCTGATAGA 1554 Query 10919 TCGGACACATGAATTCTTTGAAAATAGTTTGGTCTATTA--TAACCAGCGAGCAGACTTA 10976 ||||| |||||||| |||||||| || | | ||||| || || || | || ||| Sbjct 1555 ACGGACTCATGAATTTTTTGAAAAAAGCCTTATTTATTACGTAGCC--CGTCCGGATTTA 1612 Query 10977 ATGATGGT--GCAAGGGAGACATTGTTTAAATAAAA---CAGGAATCAAGGTGTGTTGGG 11031 ||| | || | | ||| || || ||| |||| ||| | | ||||||||| Sbjct 1613 ATGGTCGTAAGAGACGGA-ACCCTG-CAAAACAAAACCCCAGAACAGATCGTGTGTTGGA 1670 Query 11032 AGGGTCAGAAGGGGGGATTAGAAGGGTTGAGGCAAAAAGGATGGAGTATATTGAATTATC 11091 |||| ||||| || || | || || | || || ||||||||||| || | |||||| Sbjct 1671 AGGGCCAGAAAGGTGGGCTGGAGGGACTCAGACAGAAAGGATGGAGCATTGTAAATTATT 1730 Query 11092 TAATGATAG-AGAGGGAGAGTAAGATAAGAAACACTAAGGTTAAAATTCTAGCTCAAGGG 11150 | || ||| ||| | | | | | | ||| || || || || || |||| ||||| Sbjct 1731 TGATTCTAGAAGAAGAGGCCTCA-AGAGTAAATACCAAAGTAAATGTTTTAGCCCAAGGA 1789 Query 11151 GACAATCAG 11159 || |||||| Sbjct 1790 GATAATCAG 1798 >seq46121 Length=3043 Score = 87.8 bits (96), Expect = 2e-13 Identities = 110/151 (73%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 10808 CATAGCCAACAACATTGATTATGAGAAATGGAATAATTATCAAAGGAAAGAATCAAATGG 10867 ||| || ||| |||| || || || |||||||| || ||||| |||||||||| || Sbjct 1192 CATTGCTAACCACATAGACTACGAAAAATGGAACAACCATCAACGGAAAGAATCCAACCA 1133 Query 10868 ACCGGTATTCAGAGTAATGGGACAATTCCTTGGAATGGAAAATCTTATAGTTCGGACACA 10927 || || ||| ||| ||||| || |||| ||| |||||| || |||| || Sbjct 1132 ACATGTCTTCCAAGTGATGGGCCAGTTCCAAGGATACCCAAATCTAATCACCAGGACTCA 1073 Query 10928 TGAATTCTTTGAAAATAGTTTGGTCTATTAT 10958 ||| ||||||||||| ||| |||| |||||| Sbjct 1072 TGACTTCTTTGAAAAGAGTCTGGTGTATTAT 1042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 49131493209240