Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_025397.1 Length=13203 Score E Sequences producing significant alignments: (Bits) Value seq263735 131 1e-26 seq42553 80.6 2e-11 >seq263735 Length=2160 Score = 131 bits (144), Expect = 1e-26 Identities = 340/510 (67%), Gaps = 10/510 (2%) Strand=Plus/Plus Query 8275 TACTTTGTCATAACAGAATTATTGATCAAAGAGCACTTT-GTTCCGTTGTTTTCTGGATT 8333 || ||||| | || ||||| || || ||| | | ||| || ||||| ||| | || | Sbjct 1297 TATTTTGTGTTGACCGAATTTTTAATAAAAAAACTTTTTTGTCCCGTTATTTGATAGACT 1356 Query 8334 AACTATGGCTGATGATCTGCAAGAGTTAACaaaaaaaTTATTGGATAGAATATCCGGG-C 8392 ||| |||||||||||||| || |||| || || | || ||| | | | || | Sbjct 1357 AACCATGGCTGATGATCTCACTGAAGTAACTAAGAAGATGATGAATA-ATTCTGATGGTC 1415 Query 8393 AAAATGGGCCAGAAACTAATCGTATAAATATTGCCAATGGTTTGGACTACACAAAATGGA 8452 || | ||||| | || || |||||| || | || || |||||||||| Sbjct 1416 AAGGATGCCCAGATTATTCACGCATCTGTATTGCTAACCACATTGATTATACAAAATGGA 1475 Query 8453 ATAATTACCAAAGAAGGGATTCTAATAAATATGTCTTCAGAGTTATGGGACAATTTCTAG 8512 ||||| |||| |||| ||| || || || ||||| || ||||| ||||| |||||| ||| Sbjct 1476 ATAATCACCAGAGAAAGGAGTCCAACAAGTATGTATTTAGAGTGATGGGTCAATTTTTAG 1535 Query 8513 GTTATCCTTCACTCATTGAGAAAACTCATGAATTCTTCGAAAAATCATTGATATATTACC 8572 | || || || || || ||||||||||| || |||||| | || |||||| Sbjct 1536 GATACCCAAGTCTGATAGAACGGACTCATGAATTTTTTGAAAAAAGCCTTATTTATTACG 1595 Query 8573 CAGGGAGGCCAGACTTAATGGACATCCAAAATGGCACTTTAGTCAACAAA----GGGAAT 8628 || | || || ||||||| | | | | || || | |||||| ||| Sbjct 1596 TAGCCCGTCCGGATTTAATGGTCGTAAGAGACGGAACCCTGCAAAACAAAACCCCAGAAC 1655 Query 8629 ATCAAGGTTTGTTGGAATGGACAAAAAGGCGGGTTAGAGGGGTTGAGGCAAAAAGGGTGG 8688 | | || |||||||| || || ||||| ||| | ||||| | || || ||||| ||| Sbjct 1656 A-GATCGTGTGTTGGAAGGGCCAGAAAGGTGGGCTGGAGGGACTCAGACAGAAAGGATGG 1714 Query 8689 TCAATATTAAATTACTTGATGATCGAGAGAGA-GTCTCGTGTAAGAAACTCCATGGTAAA 8747 || ||||||| ||||| | || ||| | ||| | | ||| ||| ||||| Sbjct 1715 AGCATTGTAAATTATTTGATTCTAGAAGAAGAGGCCTCAAG-AGTAAATACCAAAGTAAA 1773 Query 8748 AATTTTAGCCCAAGGAGACAATCAAATTAT 8777 |||||||||||||||| ||||| |||| Sbjct 1774 TGTTTTAGCCCAAGGAGATAATCAGGTTAT 1803 >seq42553 Length=2057 Score = 80.6 bits (88), Expect = 2e-11 Identities = 110/154 (71%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 8212 AAGGAAAGAGAATTGAAACGAACCGGACGATATTTCTCTCTTATGTCCTTTAACTTGAGA 8271 ||||| ||||| ||||| | ||| ||| ||| |||| ||||||| | | || Sbjct 602 AAGGAGAGAGAGATGAAAAGGGTTGGAAGATTTTTTGCTCTCATGTCCTGGGATCTTCGA 543 Query 8272 CATTACTTTGTCATAACAGAATTATTGATCAAAGAGCACTTTGTTCCGTTGTTTTCTGGA 8331 | ||||||||| | ||||| | | |||||||||||||| || || ||||| ||| Sbjct 542 GAGTACTTTGTCCTCACAGAGTACCTCATCAAAGAGCACTTCGTCCCCTTGTTCAAAGGA 483 Query 8332 TTAACTATGGCTGATGATCTGCAAGAGTTAACaa 8365 ||||| ||||| || |||||| ||| | |||| Sbjct 482 TTAACAATGGCCGACGATCTGACTGAGGTTACAA 449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 41990603024528