Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_025399.1 Length=11220 Score E Sequences producing significant alignments: (Bits) Value seq46121 84.2 2e-12 >seq46121 Length=3043 Score = 84.2 bits (92), Expect = 2e-12 Identities = 198/291 (68%), Gaps = 10/291 (3%) Strand=Plus/Minus Query 6591 ACTGAACTCCTGATCAAAGAACATTTCATCCCACTGTTTGATGGCATAACGATGGCAGAT 6650 |||||| ||| ||||||||||||||| | |||||||| | ||| | || ||||| ||| Sbjct 1326 ACTGAATACCTAATCAAAGAACATTTCGTTCCACTGTTCCAAGGCCTCACTATGGCGGAT 1267 Query 6651 GATCTGAAAAATGTCATAGGGAAGATGATCTCTCGATCTGATGGACAGGGGCGGGATGAC 6710 || || | | || | | ||||| || | | || ||||| || || | || Sbjct 1266 GACCTCACCGAGGTGACACGGAAGGTGTTGAATAATTCAGATGGGCAAGGATGTCCAGAT 1207 Query 6711 TA--CAAGGAAGTGACATATGCAAACCACATGGATTATAGCAAATGGAACAATCATCAAA 6768 || ||| ||| | ||| ||| |||||||| || || ||||||||||| |||||| Sbjct 1206 TATTCAA-GAATTTGCAT-TGCTAACCACATAGACTACGAAAAATGGAACAACCATCAA- 1150 Query 6769 GAGGAAAG-ATC--AACAACCCGACATTCAAGGTGATGGGGATGTTTCTAGGTTATCCTA 6825 |||||| ||| | |||| | | ||| | |||||||| ||| | ||| || || | Sbjct 1149 -CGGAAAGAATCCAACCAACATGTC-TTCCAAGTGATGGGCCAGTTCCAAGGATACCCAA 1092 Query 6826 AATTGATAGAAAGAACACATGAGATCTTTGAGAAAAGCTTGATCTACTATG 6876 | | || || || ||||| ||||||| || || || | || |||| Sbjct 1091 ATCTAATCACCAGGACTCATGACTTCTTTGAAAAGAGTCTGGTGTATTATG 1041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35672596271616