Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_025400.1 Length=15444 Score E Sequences producing significant alignments: (Bits) Value seq263735 161 1e-35 seq46121 86.0 6e-13 >seq263735 Length=2160 Score = 161 bits (178), Expect = 1e-35 Identities = 450/682 (66%), Gaps = 24/682 (4%) Strand=Plus/Plus Query 10516 ACCTGCAACAAATTGGCCAGAATTTTTACAAAGGGTGAATGATCATGGATTA---GATTG 10572 |||||| ||||||||| | ||||||| || ||| ||||| |||| | ||| Sbjct 1149 ACCTGCTACAAATTGGAAACAATTTTTGCAGGAGGTTAATGACAATGGCCTGCCCGAT-- 1206 Query 10573 GGAGAAGTTGGTGATAGGTTTAAAAGCCAAAGAAAGGGAGCTTAA-AGAAGAAGGCAGGT 10631 ||| | || ||||| | || ||||| |||| | || |||| | || || | Sbjct 1207 -GAGTCTCTAGTTATAGGACTCCGAGGTAAAGAGCGGGAAATGAAGAGAATA-GGTAGAT 1264 Query 10632 TTTTCTCTTTAATGAGTTATGAG--TTAAGAGACTACTTTGTTGCAACTGAATACTTGAT 10689 |||| | |||||| | ||| | ||| | || || ||||| || |||| || || Sbjct 1265 TTTTTACCTTAATG--TCATGGGCCTTACGTGAGTATTTTGTGTTGACCGAATTTTTAAT 1322 Query 10690 CAAAAAA-TATTATGTACCATTATTCGAAGGACTTACAATGGCGGATGATTTGAATACAG 10748 |||||| | || ||| || ||||| || |||| || ||||| |||||| | | | || Sbjct 1323 AAAAAAACTTTTTTGTCCCGTTATTTGATAGACTAACCATGGCTGATGATCTCACTGAAG 1382 Query 10749 TCATCAAAAAGATGCTGGATGTGTCCTCCGGCCAAGGAACAAGAAACTATGATT--ATGT 10806 | | || |||||| || || || || |||||| | | ||| || | Sbjct 1383 TAACTAAGAAGATGATGAATAATTCTGATGGTCAAGGATGCCCAGATTATTCACGCATCT 1442 Query 10807 GTCAATAGCTAACAATATTGATTATGAAAAATGGAATAATTATCAAAGAAAAGAATCAAA 10866 || || |||||| | ||||||||| ||||||||||||| | || ||||| || || || Sbjct 1443 GT--ATTGCTAACCACATTGATTATACAAAATGGAATAATCACCAGAGAAAGGAGTCCAA 1500 Query 10867 TGGACCAGTATTCAGAGTAATGGGGCAATTCCTTGGAATGGAAAATTTGATAGTTCGGAC 10926 ||||| ||||| ||||| ||||| | ||| || | |||||| ||||| Sbjct 1501 CAAGTATGTATTTAGAGTGATGGGTCAATTTTTAGGATACCCAAGTCTGATAGAACGGAC 1560 Query 10927 ACATGAATTCTTTGAAAATAGTTTGGTTTATTA--TAACCAGCGAGCAGATTTAATGATG 10984 |||||||| |||||||| || | ||||||| || || || | ||||||||| | Sbjct 1561 TCATGAATTTTTTGAAAAAAGCCTTATTTATTACGTAGCC--CGTCCGGATTTAATGGTC 1618 Query 10985 GTACAAGGAAGAAATTGTTTAAACAGAA---CAGGAACCAAGGTGTGTTGGGAGGGTCAA 11041 ||| || ||| ||||| || ||| | | ||||||||| |||| || Sbjct 1619 GTAAGAGACGGAACCCTGCAAAACAAAACCCCAGAACAGATCGTGTGTTGGAAGGGCCAG 1678 Query 11042 AAAGGGGGATTAGAGGGGCTGAGGCAAAAGGGATGGAGCATATTGAATTATTTAATGATA 11101 ||||| || | ||||| || || || || ||||||||||| | |||||||| || || Sbjct 1679 AAAGGTGGGCTGGAGGGACTCAGACAGAAAGGATGGAGCATTGTAAATTATTTGATTCTA 1738 Query 11102 NNNNNNNNNNNTAAGATAAGAAATACCAAAGTTAAAATATTAGCTCAAGGAGACAATCAG 11161 | | |||||||||||| || | ||||| |||||||| |||||| Sbjct 1739 GAAGAAGAGGCCTCAAGAGTAAATACCAAAGTAAATGTTTTAGCCCAAGGAGATAATCAG 1798 Query 11162 ACTATAAGTATGCATTACAAGA 11183 ||| ||| ||||| |||| Sbjct 1799 GTTATTTGTACTCATTATAAGA 1820 >seq46121 Length=3043 Score = 86.0 bits (94), Expect = 6e-13 Identities = 208/313 (66%), Gaps = 4/313 (1%) Strand=Plus/Minus Query 10650 ATGAGTTAAGAGACTACTTTGTTGCAACTGAATACTTGATCAAAAAATATTATGTACCAT 10709 |||| | ||||| || || || | ||||||||| | |||||| || ||| || ||| Sbjct 1352 ATGACCTGAGAGAATATTTCGTCGTTACTGAATACCTAATCAAAGAACATTTCGTTCCAC 1293 Query 10710 TATTCGAAGGACTTACAATGGCGGATGATTTGAATACAGTCATCAAAAAGATGCTGGATG 10769 | ||| |||| || || ||||||||||| | | || | ||| || || || Sbjct 1292 TGTTCCAAGGCCTCACTATGGCGGATGACCTCACCGAGGTGACACGGAAGGTGTTGAATA 1233 Query 10770 TGTCCTCCGGCCAAGGAACAAGAAACTATG--ATTATGTGTCAATAGCTAACAATATTGA 10827 || || |||||| | | ||| | || || || |||||| | || || Sbjct 1232 ATTCAGATGGGCAAGGATGTCCAGATTATTCAAGAATTTGC--ATTGCTAACCACATAGA 1175 Query 10828 TTATGAAAAATGGAATAATTATCAAAGAAAAGAATCAAATGGACCAGTATTCAGAGTAAT 10887 || ||||||||||| || ||||| | |||||||| || || || ||| ||| || Sbjct 1174 CTACGAAAAATGGAACAACCATCAACGGAAAGAATCCAACCAACATGTCTTCCAAGTGAT 1115 Query 10888 GGGGCAATTCCTTGGAATGGAAAATTTGATAGTTCGGACACATGAATTCTTTGAAAATAG 10947 ||| || |||| ||| |||| | || |||| ||||| ||||||||||| || Sbjct 1114 GGGCCAGTTCCAAGGATACCCAAATCTAATCACCAGGACTCATGACTTCTTTGAAAAGAG 1055 Query 10948 TTTGGTTTATTAT 10960 | |||| |||||| Sbjct 1054 TCTGGTGTATTAT 1042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 49137871851656