Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_025401.1 Length=11056 Score E Sequences producing significant alignments: (Bits) Value seq263735 104 2e-18 seq46121 82.4 5e-12 >seq263735 Length=2160 Score = 104 bits (114), Expect = 2e-18 Identities = 213/315 (68%), Gaps = 9/315 (3%) Strand=Plus/Plus Query 6339 TTACGAGAGTATTTTGTTATCACAGAGTATTTGATAAAAACACATTTT-GTCAAATTGTA 6397 ||||| ||||||||||| | || || | ||| ||||||| || |||| ||| || | Sbjct 1288 TTACGTGAGTATTTTGTGTTGACCGAATTTTTAATAAAAAAACTTTTTTGTCCCGTTATT 1347 Query 6398 TGATGGCTTGACCATGGCAGATGATCTTAAAGACGTGGTTGGAAAACTGTTGAGTCGATC 6457 |||| | | |||||||| |||||||| | || || | || || ||| | || Sbjct 1348 TGATAGACTAACCATGGCTGATGATCTCACTGAAGTAACTAAGAAGATGATGAATAATTC 1407 Query 6458 AATGGGTCAGGGGACACCTGATTA----CACCTCTATAACTTTTGCTAATCATATAGATT 6513 ||||| || || ||||| | | ||| || ||||||| || || |||| Sbjct 1408 TGATGGTCAAGGATGCCCAGATTATTCACGCATCTGTA----TTGCTAACCACATTGATT 1463 Query 6514 ACAGCAAATGGAACAACCATCAAAGAAAAGAATCAAATGGCCCTTTATTCCGCGTGATGG 6573 | | |||||||| || || || ||||| || || || | |||| | ||||||| Sbjct 1464 ATACAAAATGGAATAATCACCAGAGAAAGGAGTCCAACAAGTATGTATTTAGAGTGATGG 1523 Query 6574 GACAATTCTTAGGGTTTCCCTCTTTAATTGAGAGAACTCACGAGTTTTTTGAAAAAAGTC 6633 | ||||| ||||| | || | | || || | ||||| || |||||||||||||| | Sbjct 1524 GTCAATTTTTAGGATACCCAAGTCTGATAGAACGGACTCATGAATTTTTTGAAAAAAGCC 1583 Query 6634 TAATTTACTACGCAG 6648 | ||||| |||| || Sbjct 1584 TTATTTATTACGTAG 1598 >seq46121 Length=3043 Score = 82.4 bits (90), Expect = 5e-12 Identities = 198/296 (67%), Gaps = 8/296 (3%) Strand=Plus/Minus Query 6343 GAGAGTATTTTGTTATCACAGAGTATTTGATAAAAACACATTTTGTCAAATTGTATGATG 6402 |||| ||||| || | || || || | || ||| |||||| || | ||| | | Sbjct 1343 GAGAATATTTCGTCGTTACTGAATACCTAATCAAAGAACATTTCGTTCCACTGTTCCAAG 1284 Query 6403 GCTTGACCATGGCAGATGATCTTAAAGACGTGGTTGGAAAACTGTTGAGTCGATCA-ATG 6461 || | || ||||| ||||| || | || ||| | || |||||| | ||| ||| Sbjct 1283 GCCTCACTATGGCGGATGACCTCACCGAGGTGACACGGAAGGTGTTGAATAATTCAGATG 1224 Query 6462 GGTCAGGGGACACCTGATTACACCTCTATAACTT---TTGCTAATCATATAGATTACAGC 6518 || || || || ||||| || | || || ||||||| || ||||| ||| Sbjct 1223 GG-CAAGGATGTCCAGATTAT---TCAAGAATTTGCATTGCTAACCACATAGACTACGAA 1168 Query 6519 AAATGGAACAACCATCAAAGAAAAGAATCAAATGGCCCTTTATTCCGCGTGATGGGACAA 6578 |||||||||||||||||| | |||||||| || | | | |||| |||||||| || Sbjct 1167 AAATGGAACAACCATCAACGGAAAGAATCCAACCAACATGTCTTCCAAGTGATGGGCCAG 1108 Query 6579 TTCTTAGGGTTTCCCTCTTTAATTGAGAGAACTCACGAGTTTTTTGAAAAAAGTCT 6634 ||| ||| | || | |||| || ||||| || || |||||||| ||||| Sbjct 1107 TTCCAAGGATACCCAAATCTAATCACCAGGACTCATGACTTCTTTGAAAAGAGTCT 1052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35149500260480