Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_025405.1 Length=11124 Score E Sequences producing significant alignments: (Bits) Value seq42553 102 6e-18 seq110009 78.8 7e-11 >seq42553 Length=2057 Score = 102 bits (112), Expect = 6e-18 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 6300 TTGAGAGCAAAGGAGAGAGAGTTGAAGAACAAAGGACGATTCTTTGCACTGATGTCTTGG 6359 ||||| | |||||||||||| |||| | ||| |||| ||||| || ||||| ||| Sbjct 611 TTGAGGGGGAAGGAGAGAGAGATGAAAAGGGTTGGAAGATTTTTTGCTCTCATGTCCTGG 552 Query 6360 AGACTTAGAGAATATTTTGTGGTCACAGAATATTTGATCAAAAAGCATTACATCCCTTTG 6419 ||| |||| || ||||| ||||||| || | |||||| |||| | | |||| ||| Sbjct 551 GATCTTCGAGAGTACTTTGTCCTCACAGAGTACCTCATCAAAGAGCACTTCGTCCCCTTG 492 Query 6420 TTCAAAGGCTTGACCATGGCGGATGATCT 6448 |||||||| || || ||||| || ||||| Sbjct 491 TTCAAAGGATTAACAATGGCCGACGATCT 463 >seq110009 Length=642 Score = 78.8 bits (86), Expect = 7e-11 Identities = 144/207 (70%), Gaps = 8/207 (4%) Strand=Plus/Plus Query 6246 TTCTTACAAGAGGTTAACGACCAGTGTTTCGAGAAAGATGA---TCTTATAATTGGATTG 6302 || |||||||| || |||||| | || | | |||||| |||| |||| ||| | Sbjct 332 TTTTTACAAGAAGTAAACGACAATGGTCT---GCCAGATGAGTCTCTTGTAATAGGACTC 388 Query 6303 AGAGCAAAGGAGAGAGAGTTGAAGAACAAAGGACGATTCTTTGCACTGATGTCTTGGAGA 6362 | | || ||| | ||| |||| | | |||| ||||||| || || ||||| ||| | Sbjct 389 CGTGGTAAAGAGCGCGAGATGAAAAGGATAGGAAGATTCTTCGCCCTAATGTCCTGG-GC 447 Query 6363 CTTA-GAGAATATTTTGTGGTCACAGAATATTTGATCAAAAAGCATTACATCCCTTTGTT 6421 ||| ||||||||||||| | || |||| ||||| ||||| || | ||||| || Sbjct 448 CTTGCGAGAATATTTTGTTTTGACCGAATTATTGATAAAAAACTTTTTTGTTCCTTTATT 507 Query 6422 CAAAGGCTTGACCATGGCGGATGATCT 6448 | || | || ||||| |||||||| Sbjct 508 TGATGGACTAACAATGGCCGATGATCT 534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35366393728512