Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_025406.1 Length=11141 Score E Sequences producing significant alignments: (Bits) Value seq46121 147 2e-31 seq22788 122 6e-24 seq36779 116 3e-22 seq42553 109 4e-20 seq137013 87.8 1e-13 >seq46121 Length=3043 Score = 147 bits (162), Expect = 2e-31 Identities = 387/582 (66%), Gaps = 14/582 (2%) Strand=Plus/Minus Query 6238 GAAAAACCAGCTACAGACTGGCCATCATTCTTGAAAAGGATAGATGAAGAAGGTCTAAAT 6297 || ||||| || |||| |||| | ||| | | ||||| |||| || || || | Sbjct 1485 GACAAACCTGCCACAGTCTGGAAAGACTTCCTCCAGAGGATTAATGACGAGGGACTTCCT 1426 Query 6298 GAAGAGGCTTTAGTCATAGGATTAAAAGGTAAGGAAAGAGAGCTGAAACAAGCAGGTAGA 6357 ||||| || ||||||| ||||| | | || || | || |||| || ||| | Sbjct 1425 GAAGACTCTCTAGTCATCGGATTGAGGAGAAAAGAGCGGGACTTGAA----GCGGGTCGG 1370 Query 6358 TTCTTTTCATTGATGTCATGGGAGTTACGAGAGTACTTTGTCATTACCGAATATTTAATA 6417 |||| ||| | ||||| | | |||| || || ||| |||| ||||| |||| Sbjct 1369 GCGTTTTTTTTGCTCTCATG--ACCTGAGAGAATATTTCGTCGTTACTGAATACCTAATC 1312 Query 6418 AAACACCATTTTGTACCTCTATTTAAGGGATTAACAATGGCAGATGATATGACAGAAGTG 6477 ||| | ||||| || || || || | || | || ||||| ||||| | || || ||| Sbjct 1311 AAAGAACATTTCGTTCCACTGTTCCAAGGCCTCACTATGGCGGATGACCTCACCGAGGTG 1252 Query 6478 ATCAAAAAGATGCTGGAAAGAAGTCAA--GGCCAAGGAGAATTAGACTAT-CAACATGTG 6534 | ||| || || || || ||| || |||||| ||| ||| ||| | | Sbjct 1251 ACACGGAAGGTGTTG--AATAATTCAGATGGGCAAGGATGTCCAGATTATTCAAGAATTT 1194 Query 6535 AGCATAGCGAACCATATAGATTATGAAAAGTGGAACAATCATCAAAGGAAAGAATCAAAT 6594 |||| || ||||| ||||| || ||||| |||||||| |||||| |||||||||| || Sbjct 1193 -GCATTGCTAACCACATAGACTACGAAAAATGGAACAACCATCAACGGAAAGAATCCAAC 1135 Query 6595 GGACCAGTTTTCCGTGTGATGGGCCAATTCTTGGGCTATCCATCTTTGATAGAGAGAACG 6654 || || |||| ||||||||||| ||| || || ||| | | || || || Sbjct 1134 CAACATGTCTTCCAAGTGATGGGCCAGTTCCAAGGATACCCAAATCTAATCACCAGGACT 1075 Query 6655 CATGAGTTCTTTGAGAAAAGTCTTGTTTATTACAATGGTAGACCAGACTTGATGAAGGTA 6714 ||||| |||||||| || ||||| || ||||| ||| | ||||||||| ||| | Sbjct 1074 CATGACTTCTTTGAAAAGAGTCTGGTGTATTATGTTGGAATACCAGACTTAATGCTCCAA 1015 Query 6715 GAAAATGGTGTAGTATTGAATAA-AACAGATAATTTAGTTTGCTGGAATGGTCAAGCAGG 6773 | |||| || | ||||| | ||| | || || |||||||| || ||| |||| Sbjct 1014 CGAGATGGGACTTTAATCAATAAGGAAAGACACGTT-GTCTGCTGGAACGGCCAATCAGG 956 Query 6774 GGGGTTAGAGGGACTGAGACAAAAAGGTTGGAGTATACTCAA 6815 | | || || || || |||| || |||||| | || || Sbjct 955 AGATCTGGAAGGCCTCAGGTAAAAGGGCTGGAGTGTTCTTAA 914 >seq22788 Length=2006 Score = 122 bits (134), Expect = 6e-24 Identities = 197/276 (71%), Gaps = 8/276 (3%) Strand=Plus/Minus Query 6307 TTAGTCATAGGATTAAAAGGTAAGGAAAGAGAGCTGAA-ACAAGCAGGTAGATTCTTTTC 6365 || || || ||| ||| ||| || ||| |||| |||| | | | || |||| || | Sbjct 1810 TTGGTTATCGGACTAAGAGGGAAAGAACGAGAAATGAAGAGGATC-GGAAGATATTTCGC 1752 Query 6366 ATTGATGTCATGGGAGTTACGAGAGTACTTTGTCATTACCGAATATTTAATAAAACACCA 6425 || ||||||||| | | || ||||||||||| || || || ||| | || || | | Sbjct 1751 CTTAATGTCATGGAAACTCCGTGAGTACTTTGTGATCACAGAGTATCTGATCAAGAAGTA 1692 Query 6426 TTTTGTACCTCTATTTAAGGGATTAACAATGGCAGATGATATGACAGAAGTGATCAAAAA 6485 || ||| || |||| ||||| |||||||||| || ||| | || || ||||| ||||| Sbjct 1691 TTATGTTCCGTTATTCAAGGGGCTAACAATGGCTGACGATCTAACCGAGGTGATGAAAAA 1632 Query 6486 GATGCTGGAAAGAAGTC--AAGGCCAAGGAGAATTAGACTATCAACA-TGTGAGCATAGC 6542 |||| || || | || | || |||||| |||||| || || || ||||||| Sbjct 1631 GATGATG--AACCATTCAGATGGTCAAGGATGTGCAGACTA-CACCAGAGTCTGCATAGC 1575 Query 6543 GAACCATATAGATTATGAAAAGTGGAACAATCATCA 6578 ||||||||||||||| ||||||||||| || || Sbjct 1574 GAACCATATAGATTACACCAAGTGGAACAACCACCA 1539 Score = 91.5 bits (100), Expect = 1e-14 Identities = 126/173 (73%), Gaps = 5/173 (3%) Strand=Plus/Minus Query 5783 TTTTGACTATAT---TCAGTTCTTTTAGACACTGGGGTCATCCTTTCATTAATTACATCG 5839 |||||||||| | | ||||| || | ||||||||||| || ||| || |||| |||| Sbjct 334 TTTTGACTATCTATTTTAGTTCCTTCCGCCACTGGGGTCACCCATTCCTTGATTATATCG 275 Query 5840 AGGGATTAAAGAAACTGCATGATCAAGTTACCATGCCAAAAAATATAGATAGAC-AATAT 5898 ||||| | ||| |||||||| || ||||||||| |||| ||||||| ||| ||| Sbjct 274 AGGGACTTCGGAAGCTGCATGAACAGGTTACCATGGGAAAAGATATAGA-CGACGCCTAT 216 Query 5899 GCAAATACATTGGCCAGTGATCTAGCGTACTTGATATTGAAGAAATATTTTGA 5951 ||| | | | | ||| |||| || ||| ||| |||||| || | || || Sbjct 215 GCACAGAAGCTAGGCAGCAATCTGGCCTACAAGATCTTGAAGGAACAATTCGA 163 >seq36779 Length=13892 Score = 116 bits (128), Expect = 3e-22 Identities = 268/400 (67%), Gaps = 34/400 (9%) Strand=Plus/Plus Query 6310 GTCATAGGATTAAAAGGTAAGGAAAGAGAGCTGAAACAAGCAGGTAGATTCTTTTCATTG 6369 ||||| ||| | | || || || || ||| ||||| ||| ||| | || || || | Sbjct 5388 GTCATTGGACTCAGGGGGAAAGAGAGGGAGATGAAAAGAGCGGGTCGGTTTTTAGCACTT 5447 Query 6370 ATGTCATGGGAGTTACGAGAGTACTTTGTCATTACCGAATATTTAATAAAACACCATTTT 6429 ||||| |||||||| ||||| ||||| || ||||| |||||| | || || | || ||| Sbjct 5448 ATGTCCTGGGAGTTGCGAGAATACTTCGTGATTACAGAATATCTTATCAAGGAGCACTTT 5507 Query 6430 GTACCTCTATTTAAGGGATTAACAATGGCAGATGATATGACAGAAGTGATCAAAAAGATG 6489 || || |||||||||| | || ||||| ||||| |||| || | Sbjct 5508 GTCCCATTATTTAAGGGTCTGACTATGGCCGATGAC-------------TCAATAAC-TC 5553 Query 6490 CTGGAAAGAAGTCAAGGCCAAGGAGAATTAGACTATCAACATGTGAGCATAGCGAACCAT 6549 | || || ||||| ||| | | |||| | | |||| ||||||| ||| Sbjct 5554 C--GATGGA---CAAGGGTGTCCAGACT-ATACTAAAATC-TGTG----TAGCGAATCAT 5602 Query 6550 ATAGATTATGAAAAGTGGAACAATCATCAAAGGAAAGAATCAAATGGACCAGTTTTCCGT 6609 || || |||||||| |||||||| ||| | || ||| ||| | |||||| Sbjct 5603 ATCGACTATGAAAAATGGAACAACCATAACTCCAATCAAT---ATGTA------TTCCGT 5653 Query 6610 GTGATGGGCCAATTCTTGGGCTATCCATCTTTGATAGAGAGAACGCATGAGTTCTTTGAG 6669 || |||||||| || ||||| || || | | || || | || ||||| ||||||||| Sbjct 5654 GTCATGGGCCAGTTTTTGGGTTACCCTCATCTAATTGAACGGACCCATGAATTCTTTGAG 5713 Query 6670 AAAAGTCTTGTTTATTACAATGGTAGACCAGACTTGATGA 6709 |||||| | |||||||| ||| | || || |||||| Sbjct 5714 AAAAGTTTAATTTATTACGTCGGTCGTCCCGATCTGATGA 5753 >seq42553 Length=2057 Score = 109 bits (120), Expect = 4e-20 Identities = 179/257 (70%), Gaps = 16/257 (6%) Strand=Plus/Minus Query 6325 GGTAAGGAAAGAGAGCTGAAACAAGCAGGTAGATTCTTTTCATTGATGTCATGGGAGTTA 6384 || ||||| |||||| ||||| | || ||||| ||| | | ||||| ||||| | Sbjct 605 GGGAAGGAGAGAGAGATGAAAAGGGTTGGAAGATTTTTTGCTCTCATGTCCTGGGATCTT 546 Query 6385 CGAGAGTACTTTGTCATTACCGAATATTTAATAAAACACCATTTTGTACCTCTATTTAAG 6444 ||||||||||||||| | || || || | || ||| | || || || || | || || Sbjct 545 CGAGAGTACTTTGTCCTCACAGAGTACCTCATCAAAGAGCACTTCGTCCCCTTGTTCAAA 486 Query 6445 GGATTAACAATGGCAGATGATATGACAGAAGTGATCAAAAAGATGCTGGAAAGAAGTCAA 6504 |||||||||||||| || ||| |||| || || | | |||||| || || || |||| Sbjct 485 GGATTAACAATGGCCGACGATCTGACTGAGGTTACAAGGAAGATGATG--AACAATTCAA 428 Query 6505 --GGCCAAGGAGAATTAGACTATCAACATGTGAGCATAGCGAACCATATAGATTATGAAA 6562 || ||||| |||| | | ||||||| || || || |||||| || Sbjct 427 ACGGACAAGG-----------TTCAA-AGATCTGCATAGCAAAACACATCGATTATACAA 380 Query 6563 AGTGGAACAATCATCAA 6579 ||||||| ||||||||| Sbjct 379 AGTGGAATAATCATCAA 363 >seq137013 Length=899 Score = 87.8 bits (96), Expect = 1e-13 Identities = 117/160 (73%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 8389 GGATTTAGGAGGACAGGATCTGCACTGCATAGGTTTTCCAGTTCTAGAATAAGTTCAGGA 8448 ||||| | ||| || |||| ||| ||||||||||| |||| | ||||| ||||||| Sbjct 624 GGATTCAAGAGAACTGGATTTGCTCTGCATAGGTTCTCCACAACCAGAATGTCTTCAGGA 565 Query 8449 GGATTTGCTGCCCAAAGTCCTGCCCGACTAACCAGAATGATGTCTACTACAGATAC-ATT 8507 || | |||| |||| ||| | ||| ||| | |||| |||||| |||| || Sbjct 564 GGGTACACTGCTCAAAATCCGTCTAAACTTACCTGGATGACTAGTACTACCAATACTATG 505 Query 8508 TAGAGACATTGGAGATGACAATTATGATTTCATGTTTCAA 8547 | | ||||| |||| |||||| |||| |||||||||||| Sbjct 504 TCG-GACATAGGAGGGGACAATCATGACTTCATGTTTCAA 466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35420617095520