Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_028230.1 Length=12020 Score E Sequences producing significant alignments: (Bits) Value seq263735 196 4e-46 seq22788 167 2e-37 seq250369 131 1e-26 seq110009 129 4e-26 seq46121 118 8e-23 seq36779 95.1 9e-16 seq122679 78.8 7e-11 >seq263735 Length=2160 Score = 196 bits (216), Expect = 4e-46 Identities = 322/454 (71%), Gaps = 9/454 (2%) Strand=Plus/Plus Query 7128 GCAACAGATTGGAAAAAATTCTTCCAGCAAGTCAATGACGAAGGTTTACCAGATGATGTT 7187 || ||| |||||||| |||| || ||| | || |||||| | || | || ||||| | Sbjct 1153 GCTACAAATTGGAAACAATTTTTGCAGGAGGTTAATGACAATGGCCTGCCCGATGAGTCT 1212 Query 7188 TTGATAATCGGATTAAAAGCAAAAGAAAGGGAGATGAAAAGAATCGGAAGAtttttttCA 7247 | | || ||| | || ||||| |||| ||||| ||||| || ||||||||| | Sbjct 1213 CTAGTTATAGGACTCCGAGGTAAAGAGCGGGAAATGAAGAGAATAGGTAGATTTTTTACC 1272 Query 7248 TTAATGTCTTGGGAATTAAGAGAATATTTTGTTTCTACTGAATATCTGATaaaaaaa-TA 7306 |||||||| |||| ||| | || |||||||| | || |||| | | ||||||||| | Sbjct 1273 TTAATGTCATGGGCCTTACGTGAGTATTTTGTGTTGACCGAATTTTTAATAAAAAAACTT 1332 Query 7307 TTATGTTCCATTATTCAAGGGATTGACAATGGCAGATGGATTAA-TGACAGTGGTGAAGA 7365 || ||| || ||||| | || | || ||||| |||| | | ||| ||| |||| Sbjct 1333 TTTTGTCCCGTTATTTGATAGACTAACCATGGCTGATGATCTCACTGA-AGTAACTAAGA 1391 Query 7366 AAATGATTGATTCATCATGCGGG-CAAGGAAATCTAGATTACAACACTGTATCA--ATTG 7422 | ||||| || | || || || |||||| | |||||| ||| | ||| |||| Sbjct 1392 AGATGAT-GAATAATTCTGATGGTCAAGGATGCCCAGATTATT-CAC-GCATCTGTATTG 1448 Query 7423 CCAATCATATAGATTATACAAAGTGGAACAATCACCAGAGAAGGAAGTCCAATCACCCTG 7482 | || || || ||||||||||| ||||| ||||||||||||| | ||||||| | || Sbjct 1449 CTAACCACATTGATTATACAAAATGGAATAATCACCAGAGAAAGGAGTCCAACAAGTATG 1508 Query 7483 TTTTTACTGTGATGGGACAGTTTTTGGGGTACCCGAACCTGATCACTAGAACTCATGAGT 7542 | |||| |||||||| || ||||| || ||||| | ||||| | |||||||| | Sbjct 1509 TATTTAGAGTGATGGGTCAATTTTTAGGATACCCAAGTCTGATAGAACGGACTCATGAAT 1568 Query 7543 TCTTCGAAAAAAGCTGGATATATTATGCAGGCCG 7576 | || ||||||||| || ||||| | || ||| Sbjct 1569 TTTTTGAAAAAAGCCTTATTTATTACGTAGCCCG 1602 >seq22788 Length=2006 Score = 167 bits (184), Expect = 2e-37 Identities = 250/352 (71%), Gaps = 6/352 (2%) Strand=Plus/Minus Query 7126 AAGCAACAGATTGGAAAAAATTCTTCCAGCAAGTCAATGACGAAGGTTTACCAGATGATG 7185 |||| || ||||||| | ||| | || | |||||||| | || ||| || || Sbjct 1872 AAGCTACGAATTGGAAGGAGTTCCTTCAAGACATCAATGACAACGGCTTAGACGAAAATT 1813 Query 7186 TTTTGATAATCGGATTAAAAGCAAAAGAAAGGGAGATGAAAAGAATCGGAAGAttttttt 7245 ||| | |||||| ||| || |||||| | || ||||| || |||||||||| ||| Sbjct 1812 ACTTGGTTATCGGACTAAGAGGGAAAGAACGAGAAATGAAGAGGATCGGAAGATATTTCG 1753 Query 7246 CATTAATGTCTTGGGAATTAAGAGAATATTTTGTTTCTACTGAATATCTGATaaaaaaaT 7305 | |||||||| ||| || | | || || ||||| || || |||||||| || || | Sbjct 1752 CCTTAATGTCATGGAAACTCCGTGAGTACTTTGTGATCACAGAGTATCTGATCAAGAAGT 1693 Query 7306 ATTATGTTCCATTATTCAAGGGATTGACAATGGCAGATGGATTAATGACAGTGGTGAAGA 7365 |||||||||| ||||||||||| | |||||||| || | ||| | | ||||| || Sbjct 1692 ATTATGTTCCGTTATTCAAGGGGCTAACAATGGCTGACGATCTAA---CCGAGGTGATGA 1636 Query 7366 AAATGAT--TGATTCAT-CATGCGGGCAAGGAAATCTAGATTACAACACTGTATCAATTG 7422 ||| ||| ||| ||| || || |||||| | ||| |||| || || | || | Sbjct 1635 AAAAGATGATGAACCATTCAGATGGTCAAGGATGTGCAGACTACACCAGAGTCTGCATAG 1576 Query 7423 CCAATCATATAGATTATACAAAGTGGAACAATCACCAGAGAAGGAAGTCCAA 7474 | || ||||||||||| || ||||||||||| |||||| | | | |||||| Sbjct 1575 CGAACCATATAGATTACACCAAGTGGAACAACCACCAGCGGATGGCGTCCAA 1524 >seq250369 Length=726 Score = 131 bits (144), Expect = 1e-26 Identities = 283/420 (67%), Gaps = 20/420 (5%) Strand=Plus/Minus Query 7137 TGGAAAAAATTCTTCCAGCAAGTCAATGACGAAGGTTTACCAGATGATGTTTTGATAATC 7196 |||||| | || | ||| |||||||| |||||| | || ||||| || | || Sbjct 541 TGGAAAGATTTTCTGCAGTGTGTCAATGATGAAGGTCTCCCCGATGACTCCTTAGTCATT 482 Query 7197 GGATTAAAAGCAAAAGAAAGGGAGATGAAAAGAATCGGAAGAtttttttCATTAATGTCT 7256 || || | || |||||| | |||||||| || ||||||||||||| | |||||||| Sbjct 481 GGGTTGAGAGGAAAAGAGGGAGAGATGAAGAGGGTCGGAAGATTTTTCGCTCTAATGTCT 422 Query 7257 TGGGAATTAAGAGAATATTTTGTTTCTACTGAATATCTGATaaaaaaaTATTATGTTCCA 7316 ||||| | | | || ||||| || || ||||| || ||| || | | ||| || Sbjct 421 TGGGATCTTCGGGTGTACTTTGTGCTAACAGAGTATCTCATTAAAGAACACTTTGTCCCC 362 Query 7317 TTATTCAAGGGATTGACAATGGCAGATGGATTAATGAC---AGTGGTGAAGAAAATGATT 7373 ||||||| |||||||||||||| || ||| |||| ||| | |||||||| Sbjct 361 CTATTCAAAGGATTGACAATGGCCAAT-GAT--CTGACCGAAGTTACCAGGAAAATGAAA 305 Query 7374 GA-TTCATCATGCGGGCAAGGAAATCTAGATTACAACACTGTATCAATTGCCAATCATAT 7432 | || || |||||| || || |||||| | | || || || ||| | || Sbjct 304 AAGTTACTCGGACGGGCAGGGTTGTCCCGATTACTCGAAGATCTCTATAGCAAATTACAT 245 Query 7433 AGATTATACAAAGTGGAACAATCACCAGAGAAGGAAGTCCAATCACCCTGTTTTTACTGT 7492 ||||| | ||||||||| ||||| || | ||||| || ||||| || Sbjct 244 CGATTACAAAAAGTGGAATAATCATCA---ACGGAAG----------GAGTCTTTACCGT 198 Query 7493 GATGGGACAGTTTTTGGGGTACCCGAACCTGATCACTAGAACTCATGAGTTCTTCGAAAA 7552 ||||| || || ||||| ||||| | ||| || | | |||||||||||||| || || Sbjct 197 CATGGGTCAATTCTTGGGCTACCCTACCCTCATTGCCTGCACTCATGAGTTCTTTGAGAA 138 >seq110009 Length=642 Score = 129 bits (142), Expect = 4e-26 Identities = 161/218 (74%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 7128 GCAACAGATTGGAAAAAATTCTTCCAGCAAGTCAATGACGAAGGTTTACCAGATGA-TGT 7186 || ||| |||||| | |||| || || |||| || ||| | ||| | |||||||| | | Sbjct 314 GCCACAAATTGGAGACAATTTTTACAAGAAGTAAACGACAATGGTCTGCCAGATGAGTCT 373 Query 7187 TTTGATAATCGGATTAAAAGCAAAAGAAAGGGAGATGAAAAGAATCGGAAGAtttttttC 7246 ||| |||| ||| | | ||||| | ||||||||||| || |||||||| || | Sbjct 374 CTTG-TAATAGGACTCCGTGGTAAAGAGCGCGAGATGAAAAGGATAGGAAGATTCTTCGC 432 Query 7247 ATTAATGTCTTGGGAATTAAGAGAATATTTTGTTTCTACTGAATATCTGATaaaaaaaTA 7306 ||||||| |||| || ||||||||||||||| || |||| |||||||||| | Sbjct 433 CCTAATGTCCTGGGCCTTGCGAGAATATTTTGTTTTGACCGAATTATTGATAAAAAACTT 492 Query 7307 TTATGTTCCATTATTCAAGGGATTGACAATGGCAGATG 7344 || |||||| ||||| | ||| | |||||||| |||| Sbjct 493 TTTTGTTCCTTTATTTGATGGACTAACAATGGCCGATG 530 >seq46121 Length=3043 Score = 118 bits (130), Expect = 8e-23 Identities = 304/451 (67%), Gaps = 24/451 (5%) Strand=Plus/Minus Query 7128 GCAACAGATTGGAAAAAATTCTTCCAGCAAGTCAATGACGAAGGTTTACCAGATGATGTT 7187 || |||| |||||| | ||| ||||| | |||||||| || | || || || | Sbjct 1476 GCCACAGTCTGGAAAGACTTCCTCCAGAGGATTAATGACGAGGGACTTCCTGAAGACTCT 1417 Query 7188 TTGATAATCGGATTAAAAGCAAAAGAAAGGGAGATGAAAAGAATCGGAAGAtttttttCA 7247 | | |||||||| | |||||| |||| |||| | |||| | ||||||| Sbjct 1416 CTAGTCATCGGATTGAGGAGAAAAGAGCGGGACTTGAAGCGGGTCGGGCGTTTTTTTTGC 1357 Query 7248 T-TAATGTCTTGGGAATTAAGAGAATATTTTGTTTCTACTGAATATCTGATaaaaaaaTA 7306 | | ||| | || ||||||||||| || ||||||||| || || ||| || | Sbjct 1356 TCTCATGACCTG-------AGAGAATATTTCGTCGTTACTGAATACCTAATCAAAGAACA 1304 Query 7307 TTATGTTCCATTATTCAAGGGATTGACAATGGCAGATGGATTAATGACAGTGGTGA---A 7363 || |||||| | ||| | || | || ||||| |||| | || | ||||| Sbjct 1303 TTTCGTTCCACTGTTCCAAGGCCTCACTATGGCGGATG---ACCTCACCGAGGTGACACG 1247 Query 7364 GAAAATGATTGATTCA-TCATGCGGGCAAGGAAATCTAGATTA--CAACACTGTATCAAT 7420 ||| || |||| | | ||| ||||||||| || |||||| ||| | | | || Sbjct 1246 GAAGGTG-TTGAATAATTCAGATGGGCAAGGATGTCCAGATTATTCAAGA--ATTTGCAT 1190 Query 7421 TGCCAATCATATAGATTATACAAAGTGGAACAATCA-CCAGAGAAGGAAGTCCAATCACC 7479 ||| || || ||||| || ||| |||||||| || | | ||| ||| ||||| || | Sbjct 1189 TGCTAACCACATAGACTACGAAAAATGGAACAACCATCAACGGAAAGAA-TCCAACCAAC 1131 Query 7480 CTGTTTTTACTGTGATGGGACAGTTTTTGGGGTACCCGAACCTGATCACTAGAACTCATG 7539 ||| || |||||||| ||||| || ||||| || || ||||| || ||||||| Sbjct 1130 ATGTCTTCCAAGTGATGGGCCAGTTCCAAGGATACCCAAATCTAATCACCAGGACTCATG 1071 Query 7540 AGTTCTTCGAAAAAAG-CTGGATATATTATG 7569 | ||||| ||||| || |||| | ||||||| Sbjct 1070 ACTTCTTTGAAAAGAGTCTGG-TGTATTATG 1041 >seq36779 Length=13892 Score = 95.1 bits (104), Expect = 9e-16 Identities = 148/209 (71%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 7137 TGGAAAAAATTCTTCCAGCAAGTCAATGACGAAGGTTTACCAGATGA-TGTTTTGATAAT 7195 |||||| | ||| | || | |||||||||| | || || | | || | | ||| | || Sbjct 5334 TGGAAAGAGTTCATGCAACGAGTCAATGACCATGGGTTGTCCCAGGACTCTCTTG-TCAT 5392 Query 7196 CGGATTAAAAGCAAAAGAAAGGGAGATGAAAAGAATCGGAAGAtttttttCATTAATGTC 7255 ||| | | | ||||| ||||||||||||||| || | ||||| || | ||||| Sbjct 5393 TGGACTCAGGGGGAAAGAGAGGGAGATGAAAAGAGCGGGTCGGTTTTTAGCACTTATGTC 5452 Query 7256 TTGGGAATTAAGAGAATATTTTGTTTCTACTGAATATCTGATaaaaaaaTATTATGTTCC 7315 ||||| || ||||||| || || ||| |||||||| || || | | | ||| || Sbjct 5453 CTGGGAGTTGCGAGAATACTTCGTGATTACAGAATATCTTATCAAGGAGCACTTTGTCCC 5512 Query 7316 ATTATTCAAGGGATTGACAATGGCAGATG 7344 |||||| ||||| |||| ||||| |||| Sbjct 5513 ATTATTTAAGGGTCTGACTATGGCCGATG 5541 >seq122679 Length=1484 Score = 78.8 bits (86), Expect = 7e-11 Identities = 99/136 (73%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 7434 GATTATACAAAGTGGAACAATCACCAGAGAAGGAAGTCCAATCACCCTGTTTTTACTGTG 7493 || ||||| ||||||||||| ||||| | | | |||| ||| | ||||| ||||| Sbjct 778 GACTATACCAAGTGGAACAACCACCAACGCAAGGAGTCTAATAAGTATGTTTACACTGTC 837 Query 7494 ATGGGACAGTTTTTGGGGTACCCGAACCTGATCACTAGAACTCATGAGTTCTTCGAAAAA 7553 ||||||| ||||| || || || || ||| || |||| |||||||| || | ||| Sbjct 838 ATGGGACGATTTTTAGGATATCCCAAAGGCATCGCTCGAACCCATGAGTTTTTTTAGAAA 897 Query 7554 AGCTGGATATATTATG 7569 || |||||||||| Sbjct 898 AGTCTCATATATTATG 913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 38224284130816