Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_028232.1 Length=11214 Score E Sequences producing significant alignments: (Bits) Value seq263735 156 3e-34 seq22788 152 4e-33 seq46121 129 4e-26 seq110009 93.3 3e-15 seq36779 86.0 4e-13 >seq263735 Length=2160 Score = 156 bits (172), Expect = 3e-34 Identities = 300/441 (68%), Gaps = 1/441 (0%) Strand=Plus/Plus Query 6319 GCCACTAACTGGAAAGAGTTTCTGCAAGAAATTAATGACAAGGGCTTGGAAGAAAAGTGG 6378 || || || |||||| | ||| |||| || |||||||||| ||| || || ||| Sbjct 1153 GCTACAAATTGGAAACAATTTTTGCAGGAGGTTAATGACAATGGCCTGCCCGATGAGTCT 1212 Query 6379 TTGTTAATTGGACTCAAAGCAAAAGAAAGAGAGCTAAAAATTATCGGGAGGTATTTCGCT 6438 | | || |||||| || ||||| | || | || | || || || | ||| | Sbjct 1213 CTAGTTATAGGACTCCGAGGTAAAGAGCGGGAAATGAAGAGAATAGGTAGATTTTTTACC 1272 Query 6439 CTCTTGTCATGGAAGTTGAGAGAATATTTTGTGATAACAGAGTATTTGATCAAGACTAAT 6498 | |||||||| || | || ||||||||| | || || | ||| || || | | Sbjct 1273 TTAATGTCATGGGCCTTACGTGAGTATTTTGTGTTGACCGAATTTTTAATAAAAAAACTT 1332 Query 6499 TTCATTCAC-TTGTATGATGGTCTGACAATGGCAGATGATTTAAAAGGGGTCATGATGAA 6557 || || | || | |||| | || || ||||| |||||| | | | || | | ||| Sbjct 1333 TTTTGTCCCGTTATTTGATAGACTAACCATGGCTGATGATCTCACTGAAGTAACTAAGAA 1392 Query 6558 ATTGCTCAGTAGGTCTGACGGTCAAGGGACATCAGATTACAGTAGCATAACCATTGCCAA 6617 || | | || ||||| |||||||| ||||||| |||| ||||| || Sbjct 1393 GATGATGAATAATTCTGATGGTCAAGGATGCCCAGATTATTCACGCATCTGTATTGCTAA 1452 Query 6618 CCACATTGACTATTCTAAGTGGAACAATCATCAAAGAAAAGAATCAAACAAATATGTCTT 6677 ||||||||| ||| | || ||||| ||||| || ||||| || || ||||| ||||| || Sbjct 1453 CCACATTGATTATACAAAATGGAATAATCACCAGAGAAAGGAGTCCAACAAGTATGTATT 1512 Query 6678 CCGAGTGATGGGTCAGTTCATGGGATATCCGAATTTGTTCGAAAGGACACACGAGTTTTT 6737 ||||||||||||| || | ||||| || | | || | ||| |||| || || ||||| Sbjct 1513 TAGAGTGATGGGTCAATTTTTAGGATACCCAAGTCTGATAGAACGGACTCATGAATTTTT 1572 Query 6738 TGAAAAGAGCTTGATTTATTA 6758 |||||| ||| | |||||||| Sbjct 1573 TGAAAAAAGCCTTATTTATTA 1593 >seq22788 Length=2006 Score = 152 bits (168), Expect = 4e-33 Identities = 270/394 (69%), Gaps = 0/394 (0%) Strand=Plus/Minus Query 6289 AGAGTCTTGGACACATTGATTAAAACTGAAGCCACTAACTGGAAAGAGTTTCTGCAAGAA 6348 || ||| | ||||| | || | || |||| || || ||||| ||||| || ||||| Sbjct 1900 AGGGTCCTTGACACCCTAATCGAGACGCAAGCTACGAATTGGAAGGAGTTCCTTCAAGAC 1841 Query 6349 ATTAATGACAAGGGCTTGGAAGAAAAGTGGTTGTTAATTGGACTCAAAGCAAAAGAAAGA 6408 || |||||||| ||||| || ||||| | ||| | || ||||| | || |||||| || Sbjct 1840 ATCAATGACAACGGCTTAGACGAAAATTACTTGGTTATCGGACTAAGAGGGAAAGAACGA 1781 Query 6409 GAGCTAAAAATTATCGGGAGGTATTTCGCTCTCTTGTCATGGAAGTTGAGAGAATATTTT 6468 || | || | ||||| || |||||||| | |||||||||| | | || || ||| Sbjct 1780 GAAATGAAGAGGATCGGAAGATATTTCGCCTTAATGTCATGGAAACTCCGTGAGTACTTT 1721 Query 6469 GTGATAACAGAGTATTTGATCAAGACTAATTTCATTCACTTGTATGATGGTCTGACAATG 6528 ||||| ||||||||| ||||||||| ||| ||| || | | || || |||||| Sbjct 1720 GTGATCACAGAGTATCTGATCAAGAAGTATTATGTTCCGTTATTCAAGGGGCTAACAATG 1661 Query 6529 GCAGATGATTTAAAAGGGGTCATGATGAAATTGCTCAGTAGGTCTGACGGTCAAGGGACA 6588 || || ||| ||| | ||| |||| || || | | || || |||||||| Sbjct 1660 GCTGACGATCTAACCGAGGTGATGAAAAAGATGATGAACCATTCAGATGGTCAAGGATGT 1601 Query 6589 TCAGATTACAGTAGCATAACCATTGCCAACCACATTGACTATTCTAAGTGGAACAATCAT 6648 |||| |||| || | ||| || ||||| || || || | ||||||||||| || Sbjct 1600 GCAGACTACACCAGAGTCTGCATAGCGAACCATATAGATTACACCAAGTGGAACAACCAC 1541 Query 6649 CAAAGAAAAGAATCAAACAAATATGTCTTCCGAG 6682 || | | | || |||||| | || ||| ||| Sbjct 1540 CAGCGGATGGCGTCCAACAAACACGTTTTCAGAG 1507 >seq46121 Length=3043 Score = 129 bits (142), Expect = 4e-26 Identities = 212/306 (69%), Gaps = 0/306 (0%) Strand=Plus/Minus Query 6455 TGAGAGAATATTTTGTGATAACAGAGTATTTGATCAAGACTAATTTCATTCACTTGTATG 6514 ||||||||||||| || | || || || | ||||| ||||| ||| ||| Sbjct 1346 TGAGAGAATATTTCGTCGTTACTGAATACCTAATCAAAGAACATTTCGTTCCACTGTTCC 1287 Query 6515 ATGGTCTGACAATGGCAGATGATTTAAAAGGGGTCATGATGAAATTGCTCAGTAGGTCTG 6574 | || || || ||||| ||||| | | | ||| | ||| || | | || || | Sbjct 1286 AAGGCCTCACTATGGCGGATGACCTCACCGAGGTGACACGGAAGGTGTTGAATAATTCAG 1227 Query 6575 ACGGTCAAGGGACATCAGATTACAGTAGCATAACCATTGCCAACCACATTGACTATTCTA 6634 | || ||||| ||||||| || || |||||| |||||||| ||||| | Sbjct 1226 ATGGGCAAGGATGTCCAGATTATTCAAGAATTTGCATTGCTAACCACATAGACTACGAAA 1167 Query 6635 AGTGGAACAATCATCAAAGAAAAGAATCAAACAAATATGTCTTCCGAGTGATGGGTCAGT 6694 | |||||||| |||||| | |||||||| ||| || ||||||||| ||||||||| |||| Sbjct 1166 AATGGAACAACCATCAACGGAAAGAATCCAACCAACATGTCTTCCAAGTGATGGGCCAGT 1107 Query 6695 TCATGGGATATCCGAATTTGTTCGAAAGGACACACGAGTTTTTTGAAAAGAGCTTGATTT 6754 || ||||| || ||| | || ||||| || || || ||||||||||| || | | Sbjct 1106 TCCAAGGATACCCAAATCTAATCACCAGGACTCATGACTTCTTTGAAAAGAGTCTGGTGT 1047 Query 6755 ATTATG 6760 |||||| Sbjct 1046 ATTATG 1041 >seq110009 Length=642 Score = 93.3 bits (102), Expect = 3e-15 Identities = 188/279 (67%), Gaps = 0/279 (0%) Strand=Plus/Plus Query 6319 GCCACTAACTGGAAAGAGTTTCTGCAAGAAATTAATGACAAGGGCTTGGAAGAAAAGTGG 6378 ||||| || |||| | | ||| | |||||| | || ||||| || || ||| ||| Sbjct 314 GCCACAAATTGGAGACAATTTTTACAAGAAGTAAACGACAATGGTCTGCCAGATGAGTCT 373 Query 6379 TTGTTAATTGGACTCAAAGCAAAAGAAAGAGAGCTAAAAATTATCGGGAGGTATTTCGCT 6438 | |||| |||||| | ||||| | ||| | |||| || || || | ||||| Sbjct 374 CTTGTAATAGGACTCCGTGGTAAAGAGCGCGAGATGAAAAGGATAGGAAGATTCTTCGCC 433 Query 6439 CTCTTGTCATGGAAGTTGAGAGAATATTTTGTGATAACAGAGTATTTGATCAAGACTAAT 6498 || |||| ||| ||| ||||||||||||| | || || | ||||| || | | Sbjct 434 CTAATGTCCTGGGCCTTGCGAGAATATTTTGTTTTGACCGAATTATTGATAAAAAACTTT 493 Query 6499 TTCATTCACTTGTATGATGGTCTGACAATGGCAGATGATTTAAAAGGGGTCATGATGAAA 6558 || ||| || | |||||| || |||||||| |||||| | | | ||||| || ||| Sbjct 494 TTTGTTCCTTTATTTGATGGACTAACAATGGCCGATGATCTTACTGAGGTCACGAAGAAG 553 Query 6559 TTGCTCAGTAGGTCTGACGGTCAAGGGACATCAGATTAC 6597 || | | | || || ||||||||| |||||||| Sbjct 554 ATGATGAACAACTCCGATGGTCAAGGGTGCCCAGATTAC 592 >seq36779 Length=13892 Score = 86.0 bits (94), Expect = 4e-13 Identities = 275/432 (64%), Gaps = 36/432 (8%) Strand=Plus/Plus Query 6328 TGGAAAGAGTTTCTGCAAGAAATTAATGACAAGGGCTTGGAAGAAAAGTGGTTGTTAATT 6387 ||||||||||| ||||| | | |||||| | || ||| | | | | | ||| Sbjct 5334 TGGAAAGAGTTCATGCAACGAGTCAATGACCATGGGTTGTCCCAGGACTCTCTTGTCATT 5393 Query 6388 GGACTCAAAGCAAAAGAAAGAGAGCTAAAAATTATCGGG-AGGTATTTCGCTCTCTTGTC 6446 ||||||| | ||||| || ||| | |||| | |||| ||| ||| || || |||| Sbjct 5394 GGACTCAGGGGGAAAGAGAGGGAGATGAAAA-GAGCGGGTCGGTTTTTAGCACTTATGTC 5452 Query 6447 ATGGAAGTTGAGAGAATATTTTGTGATAACAGAGTATTTGATCAAGACTAATTTCATTCA 6506 ||| ||||| ||||||| || ||||| ||||| ||| | |||||| | || | | Sbjct 5453 CTGGGAGTTGCGAGAATACTTCGTGATTACAGAATATCTTATCAAGGAGCACTTTGTCCC 5512 Query 6507 CTTGTATGATGGTCTGACAATGGCAGATGATTTAAAAGGGGTCATGATGAAATTGCTCAG 6566 || | | | |||||||| ||||| ||||| |||| Sbjct 5513 ATTATTTAAGGGTCTGACTATGGCCGATGA-------------------------CTCAA 5547 Query 6567 TAGGTCTGACGGTCAAGGGACATCAGATTACAGTAGCATAACCATTGCCAACCACATTGA 6626 || || || || |||||| |||| || | || || | || || || || || Sbjct 5548 TAACTCCGATGGACAAGGGTGTCCAGACTATACTAAAATCTGTGTAGCGAATCATATCGA 5607 Query 6627 CTATTCTAAGTGGAACAATCATCAAAGAAAAGAATCAAACAAATATGTCTTCCGAGTGAT 6686 |||| || |||||||| ||| | || || ||||||| ||||| || || Sbjct 5608 CTATGAAAAATGGAACAACCAT---------AACTCCAATCAATATGTATTCCGTGTCAT 5658 Query 6687 GGGTCAGTTCATGGGATATCCGAATTTGTTCGAAAGGACACACGAGTTTTTTGAAAAGAG 6746 ||| ||||| |||| || || || | | ||| |||| || || || ||||| || || Sbjct 5659 GGGCCAGTTTTTGGGTTACCCTCATCTAATTGAACGGACCCATGAATTCTTTGAGAAAAG 5718 Query 6747 CTTGATTTATTA 6758 || |||||||| Sbjct 5719 TTTAATTTATTA 5730 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35653458612672