Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_028234.1 Length=12162 Score E Sequences producing significant alignments: (Bits) Value seq263735 196 4e-46 seq250369 134 1e-27 seq36779 116 3e-22 seq122679 91.5 1e-14 >seq263735 Length=2160 Score = 196 bits (216), Expect = 4e-46 Identities = 556/840 (66%), Gaps = 21/840 (3%) Strand=Plus/Plus Query 7135 AGATAGGTGGCATCTATTACCTCTCATTCAATGCTTTGAGATTCCGGATTTCATTGATCC 7194 ||||||||||||| | ||||| | || |||| || ||||||||||| | |||| Sbjct 964 AGATAGGTGGCATTTGTTACCATTGATGAAATGTTTCGAGATTCCGGACACAGTAGATCA 1023 Query 7195 T-GCCAATATATACTCAGACAAGGCTCATTCCTTG--AACAAGCAAGAACTATT-AGACT 7250 ||||| || ||||| || ||| ||| ||| | || || ||| || || ||| Sbjct 1024 AAGCCAA-ATTTACTCTGATAAGAGTCACTCCCCGTAAATAAAACAGACCTTTTGAGAGA 1082 Query 7251 GGTTAAGCAAAAATCGAAAAGG---ACCTATAAAAACAAAGAGAGTCCTAACAACAATGT 7307 | | ||||| ||||| | | || | | ||| || | || || || | Sbjct 1083 ACATCAAGAAAAACTGAAAATGGGCAGCT-TCACAACGAAACGCGTGCTTGACACCCTCG 1141 Query 7308 TAAACACTCCGGCCACTAATTGGAAAGAGTTCTTTGAAGAAGTGGATCAAAATGGATTAT 7367 || || | || || || ||||||||| | || || | || || || | ||||| | Sbjct 1142 TAGACTCACCTGCTACAAATTGGAAACAATTTTTGCAGGAGGTTAATGACAATGGCCTGC 1201 Query 7368 CTGATGAAGATCTCTTGATTGGATTAAAGGCCAAAGAAAGAGAACTGAAAAGGAAAGGTA 7427 | ||||| ||| | || ||| | | ||||| | ||| |||| || | ||||| Sbjct 1202 CCGATGAGTCTCTAGTTATAGGACTCCGAGGTAAAGAGCGGGAAATGAAGAGAATAGGTA 1261 Query 7428 GAtttttttCTCTAATGACTTGGAGATTGAGAGAATACTTTGTTGCAACTGAATTCCTGA 7487 |||||||| | ||||| | ||| || | || || ||||| || ||||| | | Sbjct 1262 GATTTTTTACCTTAATGTCATGGGCCTTACGTGAGTATTTTGTGTTGACCGAATTTTTAA 1321 Query 7488 TTAAAAAACATTTT-GTCCCTCTATTTGAGGGACTAACTATGGCAGATGATTTGATCACA 7546 | ||||||| |||| ||||| ||||||| ||||||| ||||| |||||| | | | Sbjct 1322 TAAAAAAACTTTTTTGTCCCGTTATTTGATAGACTAACCATGGCTGATGATCTCACTGAA 1381 Query 7547 GTTGTGaaaaaaaTGATTCGAAACTCAAATGGACAAGGATTAAATGATTACAGTAGAATA 7606 || || || ||||| || || |||| ||||||| ||||| | || Sbjct 1382 GTAACTAAGAAGATGATGAATAATTCTGATGGTCAAGGATGCCCAGATTATTCACGCATC 1441 Query 7607 ACTATAGCAAATCATATTGATTATGAAAAGTGGAATAATCATCAAAGAAAGGAATCAAAT 7666 ||| || || || ||||||||| ||| ||||||||||| || |||||||| || || Sbjct 1442 TGTATTGCTAACCACATTGATTATACAAAATGGAATAATCACCAGAGAAAGGAGTCCAAC 1501 Query 7667 AAATATGTTTTTAAAGTTATGGGGCAATTCTTAGGTTATCCTAATTTAATTGTCAGAACC 7726 || ||||| |||| ||| ||||| ||||| ||||| || || | | | || | | || Sbjct 1502 AAGTATGTATTTAGAGTGATGGGTCAATTTTTAGGATACCCAAGTCTGATAGAACGGACT 1561 Query 7727 CATGAGTTTTTTGAAAAAAGTGTCATATACTACGCTGGGCGAGCAGACTGGATAGGAGTA 7786 ||||| |||||||||||||| | || || |||| | || | || | || | || Sbjct 1562 CATGAATTTTTTGAAAAAAGCCTTATTTATTACGTAGCCCGTCCGGATTTAATGGTCGT- 1620 Query 7787 AAGAGAAATGAGTTTATAAATTTAA----CAGAACATAGATC--ATTTTGGAATGGACAA 7840 |||||| | | ||| || |||||| ||||| | |||||| || || Sbjct 1621 AAGAGACGGAACCCTGCAAAACAAAACCCCAGAAC--AGATCGTGTGTTGGAAGGGCCAG 1678 Query 7841 AAAGGAGGACTAGAGGGATTAAGGCAAAAAGGGTGGTCCACTTTGAATTACTTAGTTATT 7900 ||||| || || |||||| | || || ||||| ||| || | | ||||| || || | Sbjct 1679 AAAGGTGGGCTGGAGGGACTCAGACAGAAAGGATGGAGCATTGTAAATTATTTGATTCTA 1738 Query 7901 GAGAGAGAAAGCAATTTGAG-AAATACAGATGTCAAAGTCTTAGCACAAGGAGATAATCA 7959 || ||| | || ||| |||||| | || || || ||||| |||||||||||||| Sbjct 1739 GA-AGAAGAGGCCTCAAGAGTAAATACCAAAGTAAATGTTTTAGCCCAAGGAGATAATCA 1797 >seq250369 Length=726 Score = 134 bits (148), Expect = 1e-27 Identities = 247/360 (69%), Gaps = 18/360 (5%) Strand=Plus/Minus Query 7400 AAAGAAAGAGAACTGAAAAGGAAAGGTAGAtttttttCTCTAATGACTTGGAGAT-TGAG 7458 ||||| |||| |||| ||| || |||||||| |||||||| ||||| ||| | | Sbjct 469 AAAGAGGGAGAGATGAAGAGGGTCGGAAGATTTTTCGCTCTAATGTCTTGG-GATCTTCG 411 Query 7459 AGAATACTTTGTTGCAACTGAATTCCTGATTAAAAAACATTTTGTCCCTCTATTTGAGGG 7518 | |||||||| ||| || | || |||||| |||| |||||||| ||||| | || Sbjct 410 GGTGTACTTTGTGCTAACAGAGTATCTCATTAAAGAACACTTTGTCCCCCTATTCAAAGG 351 Query 7519 ACTAACTATGGCAGATGATTTGATCACAGTTGTGaaaaaaaTGATTC-GAAACTCAAATG 7577 | | || ||||| ||||| ||| | |||| | ||||||| | |||| | | Sbjct 350 ATTGACAATGGCCAATGATCTGACCGAAGTTACCAGGAAAATGAAAAAGTTACTCGGACG 291 Query 7578 GACAAGGATTAAATGATTACAGTAGAATAACTATAGCAAATCATATTGATTATGAAAAGT 7637 | || || | |||||| | || ||||||||||| | || ||||| |||||| Sbjct 290 GGCAGGGTTGTCCCGATTACTCGAAGATCTCTATAGCAAATTACATCGATTACAAAAAGT 231 Query 7638 GGAATAATCATCAAAGAAAGGAATCAAATAAATATGTTTTTAAAGTTATGGGGCAATTCT 7697 |||||||||||||| | ||||| || |||| || ||||| ||||||| Sbjct 230 GGAATAATCATCAACGGAAGGA-------------GTCTTTACCGTCATGGGTCAATTCT 184 Query 7698 TAGGTTATCCTAATTTAATTGTCAGAACCCATGAGTTTTTTGAAAAAAGTGTCATATACT 7757 | || || |||| | |||| | | || |||||||| |||| | |||| |||| |||| Sbjct 183 TGGGCTACCCTACCCTCATTGCCTGCACTCATGAGTTCTTTG--AGAAGTCTCATCTACT 126 >seq36779 Length=13892 Score = 116 bits (128), Expect = 3e-22 Identities = 283/435 (65%), Gaps = 38/435 (9%) Strand=Plus/Plus Query 7328 TGGAAAGAGTTCTTTGAAGAAGTGGATCAAAATGGATTATCTGATGAAGATCTCTTG--A 7385 |||||||||||| | || ||| || | |||| || || | || ||||||| | Sbjct 5334 TGGAAAGAGTTCATGCAACGAGTCAATGACCATGGGTTGTCCCAGGA--CTCTCTTGTCA 5391 Query 7386 TTGGATTAAAGGCCAAAGAAAGAGAACTGAAAAGGAAAGGTAGAtttttttCTCTAATGA 7445 ||||| | | || ||||| || || ||||||| ||| | ||||| | || ||| Sbjct 5392 TTGGACTCAGGGGGAAAGAGAGGGAGATGAAAAGAGCGGGTCGGTTTTTAGCACTTATGT 5451 Query 7446 CTTGGAGATTGAGAGAATACTTTGTTGCAACTGAATTCCTGATTAAAAAACATTTTGTCC 7505 | ||| ||| |||||||||| || || |||| || || || | || ||||||| Sbjct 5452 CCTGGGAGTTGCGAGAATACTTCGTGATTACAGAATATCTTATCAAGGAGCACTTTGTCC 5511 Query 7506 CTCTATTTGAGGGACTAACTATGGCAGATGATTTGATCACAGTTGTGaaaaaaaTGATTC 7565 | ||||| |||| || |||||||| ||||| | || Sbjct 5512 CATTATTTAAGGGTCTGACTATGGCCGATGACTCAAT----------------------- 5548 Query 7566 GAAACTCAAATGGACAAGGATTAAATGATTACAGTAGAATAACTATAGCAAATCATATTG 7625 ||||| |||||||||| | || || | || ||| | |||| |||||||| | Sbjct 5549 --AACTCCGATGGACAAGGGTGTCCAGACTATACTAAAATCTGTGTAGCGAATCATATCG 5606 Query 7626 ATTATGAAAAGTGGAATAATCATCAAAGAAAGGAATCAAATAAATATGTTTTTAAAGTTA 7685 | |||||||| ||||| || ||| | || ||| ||||||| || || | Sbjct 5607 ACTATGAAAAATGGAACAACCAT---------AACTCCAATCAATATGTATTCCGTGTCA 5657 Query 7686 TGGGGCAATTCTTAGGTTATCCTAATTTAATTGTCAGAACCCATGAGTTTTTTGAAAAAA 7745 |||| || || || ||||| ||| || |||||| | |||||||| || ||||| |||| Sbjct 5658 TGGGCCAGTTTTTGGGTTACCCTCATCTAATTGAACGGACCCATGAATTCTTTGAGAAAA 5717 Query 7746 GTGTCATATACTACG 7760 || | || || |||| Sbjct 5718 GTTTAATTTATTACG 5732 >seq122679 Length=1484 Score = 91.5 bits (100), Expect = 1e-14 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 7634 AAGTGGAATAATCATCAAAGAAAGGAATCAAATAAATATGTTTTTAAAGTTATGGGGCAA 7693 |||||||| || || ||| | ||||| || ||||| ||||||| | || ||||| | | Sbjct 787 AAGTGGAACAACCACCAACGCAAGGAGTCTAATAAGTATGTTTACACTGTCATGGGACGA 846 Query 7694 TTCTTAGGTTATCCTAATTTAATTGTCAGAACCCATGAGTTTTTTGAAAAAAGTGTCATA 7753 || ||||| ||||| || || | ||||||||||||||||| | |||||| ||||| Sbjct 847 TTTTTAGGATATCCCAAAGGCATCGCTCGAACCCATGAGTTTTTTTAGAAAAGTCTCATA 906 Query 7754 TACTA 7758 || || Sbjct 907 TATTA 911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 38677208725824