Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_028235.1 Length=12994 Score E Sequences producing significant alignments: (Bits) Value seq263735 190 2e-44 seq250369 111 1e-20 seq22788 96.9 3e-16 seq46121 89.7 4e-14 seq110009 86.0 5e-13 >seq263735 Length=2160 Score = 190 bits (210), Expect = 2e-44 Identities = 471/697 (68%), Gaps = 27/697 (4%) Strand=Plus/Plus Query 8128 CAACAAAACGTGTGTTACAAACATTATTAGAAAAACCTGAAACCAATTGGGTATCATTTT 8187 |||| ||||| ||| | | || | |||| ||||| || |||||| | ||||| Sbjct 1115 CAACGAAACGCGTGCTTGACACCCTCGTAGACTCACCTGCTACAAATTGGAAACAATTTT 1174 Query 8188 TACAAAAGATAAATGATGAAGGGTTA---GATTTGGATTCTCTAATTATTGGGTTAAAAG 8244 | || || | ||||| | || | ||| || |||||| |||| || | || Sbjct 1175 TGCAGGAGGTTAATGACAATGGCCTGCCCGAT---GAGTCTCTAGTTATAGGACTCCGAG 1231 Query 8245 CCAAAGAAAGAGAAATGAAGAGAATTGGGAGAtttttttCATTAATGTCTTGGGAGTTGA 8304 ||||| | |||||||||||||| || ||||||||| | |||||||| |||| || Sbjct 1232 GTAAAGAGCGGGAAATGAAGAGAATAGGTAGATTTTTTACCTTAATGTCATGGGCCTTAC 1291 Query 8305 GAGAATATTTTGTATATACAGAGTATTTAATAAAGGAG-TATTTTGTTCCATTATTCCAT 8363 | || |||||||| | || || | ||||||||| | | |||||| || ||||| || Sbjct 1292 GTGAGTATTTTGTGTTGACCGAATTTTTAATAAAAAAACTTTTTTGTCCCGTTATTTGAT 1351 Query 8364 GGCTTGACCATGGCAGATGACCTGCAGGAAGTTATTAAGAAAATGTTGGAGAATGTAAGT 8423 | | |||||||| ||||| || ||||| | |||||| ||| || | ||| | Sbjct 1352 AGACTAACCATGGCTGATGATCTCACTGAAGTAACTAAGAAGATGATGAATAATTCTGAT 1411 Query 8424 GGACAAGGGTTG---GATAATTACGAGTATATATCAATTGCGAATCATATTGATTATGAA 8480 || ||||| | ||| ||| | | || | | ||||| || || ||||||||| | Sbjct 1412 GGTCAAGGATGCCCAGATTATT-CACGCATCTGT--ATTGCTAACCACATTGATTATACA 1468 Query 8481 AAATGGAACAATCATCAACGATACGAATCTAATTGTCATATTTTTAAAGTTATGGGTCAA 8540 |||||||| ||||| || || | || || || || | |||| ||| ||||||||| Sbjct 1469 AAATGGAATAATCACCAGAGAAAGGAGTCCAACAAGTATGTATTTAGAGTGATGGGTCAA 1528 Query 8541 TGTTTTGGTCTTCCCAATT-TGTTTTTACGTTCTCATGAATTTTTTCAAAAAAGCCTGAT 8599 | ||| || | ||||| | || | ||| |||||||||||||| |||||||||| || Sbjct 1529 TTTTTAGGA-TACCCAAGTCTGATAGAACGGACTCATGAATTTTTTGAAAAAAGCCTTAT 1587 Query 8600 TTATTAC--AACCAACGACCTGATCTGATGATCCCCTTAGAAGACAGGCTGGAATCTATT 8657 ||||||| | || || || ||| | ||| || ||| | | ||| || | Sbjct 1588 TTATTACGTAGCC--CGTCCGGATTTAATGGTCGTAAGAGACGGAACCCTGCAAAACA-A 1644 Query 8658 GATCCCAG-TCAACTTGTTTGTTGGAATGGTCAAGCTGGAGGATTGGAAGGATTGAGGCA 8716 | ||||| || | || |||||||| || || || || |||| ||| | || || Sbjct 1645 AACCCCAGAACAGATCGTGTGTTGGAAGGGCCAGAAAGGTGGGCTGGAGGGACTCAGACA 1704 Query 8717 AAAGGGTTGGTCAATTGTAAATCTACTTG-TTATAGA--AAGAGAATCCAAAATTAGGAA 8773 || || ||| ||||||||| || ||| || |||| ||||| ||| | || || Sbjct 1705 GAAAGGATGGAGCATTGTAAAT-TATTTGATTCTAGAAGAAGAGGCCTCAAGAGTA--AA 1761 Query 8774 TACGTTAGTCAAAATTTTGGCTCAAGGAGACAATCAG 8810 ||| ||| || |||| || |||||||| |||||| Sbjct 1762 TACCAAAGTAAATGTTTTAGCCCAAGGAGATAATCAG 1798 >seq250369 Length=726 Score = 111 bits (122), Expect = 1e-20 Identities = 191/274 (70%), Gaps = 9/274 (3%) Strand=Plus/Minus Query 8232 ATTGGGTTAAAAGCCAAAGAAAGAGAAATGAAGAGAATTGGGAGAtttttttCATTAATG 8291 |||||||| | || ||||| |||| |||||||| | || |||||||| | ||||| Sbjct 484 ATTGGGTTGAGAGGAAAAGAGGGAGAGATGAAGAGGGTCGGAAGATTTTTCGCTCTAATG 425 Query 8292 TCTTGGGAGTTGAGAGAATATTTTGTATATACAGAGTATTTAATAAAGGAGTATTTTGTT 8351 |||||||| | | | || ||||| ||||||||| | || || || | ||||| Sbjct 424 TCTTGGGATCTTCGGGTGTACTTTGTGCTAACAGAGTATCTCATTAAAGAACACTTTGTC 365 Query 8352 CCATTATTCCATGGCTTGACCATGGCAGATGACCTGCAGGAAGTTATTAAGAAAATGTTG 8411 || ||||| | || ||||| ||||| |||| ||| ||||||| | |||||| Sbjct 364 CCCCTATTCAAAGGATTGACAATGGCCAATGATCTGACCGAAGTTACCAGGAAAAT---- 309 Query 8412 GAGAATGTAAGT-GGAC---AAGGGTTG-GATAATTACGAGTATATATCAATTGCGAATC 8466 || || || | | |||| ||||||| ||||| | | || || || || ||| Sbjct 308 GAAAAAGTTACTCGGACGGGCAGGGTTGTCCCGATTACTCGAAGATCTCTATAGCAAATT 249 Query 8467 ATATTGATTATGAAAAATGGAACAATCATCAACG 8500 | || ||||| |||| ||||| ||||||||||| Sbjct 248 ACATCGATTACAAAAAGTGGAATAATCATCAACG 215 >seq22788 Length=2006 Score = 96.9 bits (106), Expect = 3e-16 Identities = 186/272 (68%), Gaps = 2/272 (1%) Strand=Plus/Minus Query 8230 TTATTGGGTTAAAAGCCAAAGAAAGAGAAATGAAGAGAATTGGGAGAtttttttCATTAA 8289 |||| || ||| || |||||| ||||||||||||| || || |||| ||| | |||| Sbjct 1806 TTATCGGACTAAGAGGGAAAGAACGAGAAATGAAGAGGATCGGAAGATATTTCGCCTTAA 1747 Query 8290 TGTCTTGGGAGTTGAGAGAATATTTTGTATATACAGAGTATTTAATAAAGGAGTATTTTG 8349 |||| ||| | | | || || ||||| ||||||||| | || ||| |||||| || Sbjct 1746 TGTCATGGAAACTCCGTGAGTACTTTGTGATCACAGAGTATCTGATCAAGAAGTATTATG 1687 Query 8350 TTCCATTATTCCATGGCTTGACCATGGCAGATGACCTGCAGGAAGTTATTAAGAAAATGT 8409 |||| |||||| | || | || ||||| || || || || || || || || ||| Sbjct 1686 TTCCGTTATTCAAGGGGCTAACAATGGCTGACGATCTAACCGAGGTGATGAAAAAGATGA 1627 Query 8410 TGGAGAATGTAAGTGGACAAGGGTTGGATAATTACGAGTATA-TATCAATTGCGAATCAT 8468 || | || | ||| ||||| | | | ||| | | | | | || ||||| ||| Sbjct 1626 TGAACCATTCAGATGGTCAAGGATGTGCAGACTAC-ACCAGAGTCTGCATAGCGAACCAT 1568 Query 8469 ATTGATTATGAAAAATGGAACAATCATCAACG 8500 || ||||| || |||||||| || || || Sbjct 1567 ATAGATTACACCAAGTGGAACAACCACCAGCG 1536 >seq46121 Length=3043 Score = 89.7 bits (98), Expect = 4e-14 Identities = 166/241 (69%), Gaps = 6/241 (2%) Strand=Plus/Minus Query 8302 TGAGAGAATATTTTGTATATACAGAGTATTTAATAAAGGAGTATTTTGTTCCATTATTCC 8361 ||||||||||||| || ||| || || |||| || || |||| |||||| | |||| Sbjct 1346 TGAGAGAATATTTCGTCGTTACTGAATACCTAATCAAAGAACATTTCGTTCCACTGTTCC 1287 Query 8362 ATGGCTTGACCATGGCAGATGACCTGCAGGAAGTTATTAAGAAAATGTTGGAGAATGTAA 8421 | ||| | || ||||| |||||||| || || | ||| ||||| | ||| | Sbjct 1286 AAGGCCTCACTATGGCGGATGACCTCACCGAGGTGACACGGAAGGTGTTGAATAATTCAG 1227 Query 8422 GTGGACAAGGGT---TGGATAATTACGAGTATATATCAATTGCGAATCATATTGATTATG 8478 ||| ||||| | ||| ||| | || || | ||||| || || || || || | Sbjct 1226 ATGGGCAAGGATGTCCAGATTATT-CAAG--AATTTGCATTGCTAACCACATAGACTACG 1170 Query 8479 AAAAATGGAACAATCATCAACGATACGAATCTAATTGTCATATTTTTAAAGTTATGGGTC 8538 ||||||||||||| |||||||| | ||||| || ||| | || |||| ||||| | Sbjct 1169 AAAAATGGAACAACCATCAACGGAAAGAATCCAACCAACATGTCTTCCAAGTGATGGGCC 1110 Query 8539 A 8539 | Sbjct 1109 A 1109 >seq110009 Length=642 Score = 86.0 bits (94), Expect = 5e-13 Identities = 177/262 (68%), Gaps = 6/262 (2%) Strand=Plus/Plus Query 8128 CAACAAAACGTGTGTTACAAACATTATTAGAAAAACCTGAAACCAATTGGGTATCATTTT 8187 |||| ||||||||| | | || || |||| |||| || |||||| | ||||| Sbjct 276 CAACGAAACGTGTGCTTGACACGTTGGTAGACTCTCCTGCCACAAATTGGAGACAATTTT 335 Query 8188 TACAAAAGATAAATGATGAAGGGTT---AGATTTGGATTCTCTAATTATTGGGTTAAAAG 8244 ||||| | |||| || | || | |||| || ||||| | || || | | Sbjct 336 TACAAGAAGTAAACGACAATGGTCTGCCAGAT---GAGTCTCTTGTAATAGGACTCCGTG 392 Query 8245 CCAAAGAAAGAGAAATGAAGAGAATTGGGAGAtttttttCATTAATGTCTTGGGAGTTGA 8304 ||||| | || ||||| || || || ||||| || | ||||||| |||| ||| Sbjct 393 GTAAAGAGCGCGAGATGAAAAGGATAGGAAGATTCTTCGCCCTAATGTCCTGGGCCTTGC 452 Query 8305 GAGAATATTTTGTATATACAGAGTATTTAATAAAGGAGTATTTTGTTCCATTATTCCATG 8364 ||||||||||||| | || || | || ||||| | | ||||||||| ||||| ||| Sbjct 453 GAGAATATTTTGTTTTGACCGAATTATTGATAAAAAACTTTTTTGTTCCTTTATTTGATG 512 Query 8365 GCTTGACCATGGCAGATGACCT 8386 | | || ||||| ||||| || Sbjct 513 GACTAACAATGGCCGATGATCT 534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 41330964099392