Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_028236.1 Length=11072 Score E Sequences producing significant alignments: (Bits) Value seq263735 165 6e-37 seq46121 120 2e-23 seq22788 93.3 3e-15 seq110009 82.4 5e-12 >seq263735 Length=2160 Score = 165 bits (182), Expect = 6e-37 Identities = 332/486 (68%), Gaps = 6/486 (1%) Strand=Plus/Plus Query 6239 GGTAAGGAGAGAGAAGTCAAAGTAAAAGGAAGATTCTTTTCCCTGATGTCTTGGAAGCTG 6298 ||||| ||| | ||| | || || ||| ||||| ||| || | ||||| ||| | Sbjct 1231 GGTAAAGAGCGGGAAATGAAGAGAATAGGTAGATTTTTTACCTTAATGTCATGGGCCTTA 1290 Query 6299 AGAGAGTATTTCGTGGTGACGGAGTACTTGATAAAGGAGCATTAC-GTTCCTTTATTTAA 6357 | |||||||| ||| |||| || | || ||||| | | || || || |||||| | Sbjct 1291 CGTGAGTATTTTGTGTTGACCGAATTTTTAATAAAAAAACTTTTTTGTCCCGTTATTTGA 1350 Query 6358 TGGGCTGACAATGGCTGATGACATGACAACAGTTATATCCAAGCTGATGGATAGAACGCA 6417 | | || || ||||||||||| | || ||| | ||| ||||| ||| | | Sbjct 1351 TAGACTAACCATGGCTGATGATCTCACTGAAGTAACTAAGAAGATGATGAATAATTCTGA 1410 Query 6418 GGGGCAAGGAGGGAGTGATTATTCTCAAATCTGTATTGCAAATCATATAGATTATGAGAA 6477 || |||||| | |||||||| | ||||||||||| || || || |||||| || Sbjct 1411 TGGTCAAGGATGCCCAGATTATTCACGCATCTGTATTGCTAACCACATTGATTATACAAA 1470 Query 6478 GTGGAACAATCACCAAAGAAAGGA-TGCCACTGGTCCAGTTTTCAAAGTCATGGGTCAGT 6536 ||||| |||||||| |||||||| | | || || || || | ||| |||||||| | Sbjct 1471 ATGGAATAATCACCAGAGAAAGGAGTCCAACAAGT-ATGTATTTAGAGTGATGGGTCAAT 1529 Query 6537 TTTTGGGGTATCCCAATTTAATATACCGGACACATGAATTCTTTGAAAATAGCTGGATAT 6596 |||| || || || | | | ||| | ||||| |||||||| |||||||| ||| || | Sbjct 1530 TTTTAGGATACCCAAGTCTGATAGAACGGACTCATGAATTTTTTGAAAAAAGCCTTATTT 1589 Query 6597 ACTACAATGGGAGACCTGACCTGATGACTGTCAGGGATGGAAGACTGCTTAACAGCACCC 6656 | ||| | | || || | ||| || || || |||| |||| |||| |||| Sbjct 1590 ATTACGTAGCCCGTCCGGATTTAATGGTCGTAAGAGACGGAACCCTGCAAAACAAAACCC 1649 Query 6657 CTCAA-AGA--GTGTGTTGGGAGGGACAACTGGGAGGATTGGAGGGTTTAAGACAAAAGG 6713 | || ||| ||||||||| |||| || || || ||||||| | ||||| || | Sbjct 1650 CAGAACAGATCGTGTGTTGGAAGGGCCAGAAAGGTGGGCTGGAGGGACTCAGACAGAAAG 1709 Query 6714 GATGGA 6719 |||||| Sbjct 1710 GATGGA 1715 >seq46121 Length=3043 Score = 120 bits (132), Expect = 2e-23 Identities = 225/328 (69%), Gaps = 2/328 (1%) Strand=Plus/Minus Query 6296 CTGAGAGAGTATTTCGTGGTGACGGAGTACTTGATAAAGGAGCATTACGTTCCTTTATTT 6355 |||||||| |||||||| || || || ||| | || || || |||| |||||| | || Sbjct 1347 CTGAGAGAATATTTCGTCGTTACTGAATACCTAATCAAAGAACATTTCGTTCCACTGTTC 1288 Query 6356 AATGGGCTGACAATGGCTGATGACATGACAACAGTTATATCCAAGCTGATGGATAGAACG 6415 | || || || ||||| |||||| | || || | | ||| || || ||| | Sbjct 1287 CAAGGCCTCACTATGGCGGATGACCTCACCGAGGTGACACGGAAGGTGTTGAATAATTCA 1228 Query 6416 CAGGGGCAAGGAGGGAGTGATTATTCTCAAATCTGTATTGCAAATCATATAGATTATGAG 6475 | ||||||||| | |||||||| ||| || ||||| || || ||||| || || Sbjct 1227 GATGGGCAAGGATGTCCAGATTATTCAAGAATTTGCATTGCTAACCACATAGACTACGAA 1168 Query 6476 AAGTGGAACAATCACCAAAGAAAGGATGCCACTGGTCCAGTTTTCAAAGTCATGGGTCAG 6535 || |||||||| || ||| | || || ||| | || ||| |||| ||||| ||| Sbjct 1167 AAATGGAACAACCATCAACGGAAAGAATCCAACCAACATGTCTTCCAAGTGATGGGCCAG 1108 Query 6536 TTTTTGGGGTATCCCAATTTAATATACCGGACACATGAATTCTTTGAAAATAG-CTGGAT 6594 || || || || ||| |||| | |||| ||||| ||||||||||| || |||| | Sbjct 1107 TTCCAAGGATACCCAAATCTAATCACCAGGACTCATGACTTCTTTGAAAAGAGTCTGG-T 1049 Query 6595 ATACTACAATGGGAGACCTGACCTGATG 6622 || || ||| | ||| ||| | ||| Sbjct 1048 GTATTATGTTGGAATACCAGACTTAATG 1021 >seq22788 Length=2006 Score = 93.3 bits (102), Expect = 3e-15 Identities = 180/266 (68%), Gaps = 0/266 (0%) Strand=Plus/Minus Query 6227 ATCGGATTAAAGGGTAAGGAGAGAGAAGTCAAAGTAAAAGGAAGATTCTTTTCCCTGATG 6286 |||||| ||| || || || ||||| | || | ||||||| || || | ||| Sbjct 1804 ATCGGACTAAGAGGGAAAGAACGAGAAATGAAGAGGATCGGAAGATATTTCGCCTTAATG 1745 Query 6287 TCTTGGAAGCTGAGAGAGTATTTCGTGGTGACGGAGTACTTGATAAAGGAGCATTACGTT 6346 || ||||| || | ||||| || ||| | || ||||| |||| ||| || |||| ||| Sbjct 1744 TCATGGAAACTCCGTGAGTACTTTGTGATCACAGAGTATCTGATCAAGAAGTATTATGTT 1685 Query 6347 CCTTTATTTAATGGGCTGACAATGGCTGATGACATGACAACAGTTATATCCAAGCTGATG 6406 || ||||| || ||||| ||||||||||| || | || || || ||| ||||| Sbjct 1684 CCGTTATTCAAGGGGCTAACAATGGCTGACGATCTAACCGAGGTGATGAAAAAGATGATG 1625 Query 6407 GATAGAACGCAGGGGCAAGGAGGGAGTGATTATTCTCAAATCTGTATTGCAAATCATATA 6466 | | | || |||||| | || || | | |||| || || || |||||| Sbjct 1624 AACCATTCAGATGGTCAAGGATGTGCAGACTACACCAGAGTCTGCATAGCGAACCATATA 1565 Query 6467 GATTATGAGAAGTGGAACAATCACCA 6492 ||||| ||||||||||| ||||| Sbjct 1564 GATTACACCAAGTGGAACAACCACCA 1539 >seq110009 Length=642 Score = 82.4 bits (90), Expect = 5e-12 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 6239 GGTAAGGAGAGAGAAGTCAAAGTAAAAGGAAGATTCTTTTCCCTGATGTCTTGGAAGCTG 6298 ||||| ||| | || | ||| | |||||||||||| |||| ||||| ||| || Sbjct 392 GGTAAAGAGCGCGAGATGAAAAGGATAGGAAGATTCTTCGCCCTAATGTCCTGGGCCTTG 451 Query 6299 AGAGAGTATTTCGTGGTGACGGAGTACTTGATAAAGGAGCATTACGTTCCTTTATTTAAT 6358 |||| ||||| || |||| || | |||||||| | || |||||||||||| || Sbjct 452 CGAGAATATTTTGTTTTGACCGAATTATTGATAAAAAACTTTTTTGTTCCTTTATTTGAT 511 Query 6359 GGGCTGACAATGGCTGATGA 6378 || || |||||||| ||||| Sbjct 512 GGACTAACAATGGCCGATGA 531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35200534017664