Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_028239.1 Length=16133 Score E Sequences producing significant alignments: (Bits) Value seq263735 159 4e-35 seq36779 138 1e-28 seq46121 125 7e-25 seq53828 86.0 6e-13 >seq263735 Length=2160 Score = 159 bits (176), Expect = 4e-35 Identities = 394/577 (68%), Gaps = 28/577 (5%) Strand=Plus/Plus Query 11302 TAAAGAGAGGGAATTGAAAGATGCTGGG-AGGtttttttCATTAATGAGCTGGGAGCTGA 11360 ||||||| ||||| |||| || | || || |||||| | |||||| |||| | Sbjct 1233 TAAAGAGCGGGAAATGAA-GAGAATAGGTAGATTTTTTACCTTAATGTCATGGGCCTTAC 1291 Query 11361 GGGAGTACTTCGTATTTACTGAATACCTAATTAAAGAGCATTTT-GTACCATTATTTAAG 11419 | ||||| || || || || |||| |||| ||| | | |||| || || |||||| | Sbjct 1292 GTGAGTATTTTGTGTTGACCGAATTTTTAATAAAAAAACTTTTTTGTCCCGTTATTTGAT 1351 Query 11420 GGTCTGACTATGGCTGATGA-CTTACAAACAGTTATTAAGAAGATGATAGATGTGTCTTC 11478 | || || ||||||||||| || || | ||| | |||||||||||| || ||| Sbjct 1352 AGACTAACCATGGCTGATGATCTCACTGA-AGTAACTAAGAAGATGATGAATAATTCTGA 1410 Query 11479 TGGTCAAGGCA-CTGAGACATATGAGAATATCACCATTGCAAATAACATAGATTATGAGA 11537 ||||||||| | ||| ||| ||| ||||| || |||| |||||| | Sbjct 1411 TGGTCAAGGATGCCCAGAT-TATTCACGCATCTGTATTGCTAACCACATTGATTATACAA 1469 Query 11538 AATGGAATAATTATCAAAGGTATGAATCTAATCATGCA-ATATTCACAGTGATGGGGCAA 11596 ||||||||||| | || || | || || || || | | |||| | ||||||||| ||| Sbjct 1470 AATGGAATAATCACCAGAGAAAGGAGTCCAA-CAAGTATGTATTTAGAGTGATGGGTCAA 1528 Query 11597 TTTTTAGGGTATCCAAAGTTAATTGCAAGAACTCATGAGTTTTTTGAGAAAAGCCTAGTT 11656 |||||||| || |||| | || | | | |||||||| |||||||| |||||||| || Sbjct 1529 TTTTTAGGATACCCAAGTCTGATAGAACGGACTCATGAATTTTTTGAAAAAAGCCTTATT 1588 Query 11657 TATTA--TAACCAAAGACCTGACTTAATGAGAGTAGTAG--GGAA---TGAAGTAATAAG 11709 ||||| || || | || || |||||| ||| || |||| || | || || Sbjct 1589 TATTACGTAGCC--CGTCCGGATTTAATGGTCGTAAGAGACGGAACCCTGCA-AAACAA- 1644 Query 11710 CTCCAATTCTAGAA-AGGTAGCATG--GGAA-GGTCAGAAAGGTGGACTGGAGGGATTAA 11765 || | |||| || | | || |||| || ||||||||||| ||||||||| | | Sbjct 1645 ----AACCCCAGAACAGATCGTGTGTTGGAAGGGCCAGAAAGGTGGGCTGGAGGGACTCA 1700 Query 11766 GGCAGAAAGGGTGGAGTGTGGTGAATCTATTAATGATAGAGAGAGAAGTAAAAATAAGAA 11825 | |||||||| ||||| | || ||| || || |||| ||| | || | || Sbjct 1701 GACAGAAAGGATGGAGCATTGTAAATTATTTGATTCTAGAAGAAGAGGCCTCAAGAGTAA 1760 Query 11826 ACACGTTAGTTAAGGTCTTAGCCCAGGGTGATAATCA 11862 | || ||| || || |||||||| || |||||||| Sbjct 1761 ATACCAAAGTAAATGTTTTAGCCCAAGGAGATAATCA 1797 Score = 84.2 bits (92), Expect = 2e-12 Identities = 132/186 (71%), Gaps = 10/186 (5%) Strand=Plus/Plus Query 10771 TGGATCATTCAGACATTGGGGACACCCTTTTATCAATTATTTAGAAGGATTAGAGAAGTT 10830 ||| ||||||||||| ||||| ||||| || | |||||||||||||| | | ||||| Sbjct 697 TGGTTCATTCAGACACTGGGGTCACCCCTTCCTGGATTATTTAGAAGGACTGCAAAAGTT 756 Query 10831 A---GA--AAGTCAAGTGAATGCTAAGTTAGAAGTTGATGAAGAGTATTGTAATAAACTG 10885 | || |||| |||| | | | |||| ||||||| | ||| | ||||| Sbjct 757 ATTTGAACAAGT-AAGTTTACCCAA----AGAAATTGATGATGCTTATGCACAAAAACTT 811 Query 10886 GCAAGTGATTTAGCATACAAAGTTCTCAAAAAGATGTTCTTTGAGaaaaaaaGATGGTTT 10945 || || | | ||||||||||| || ||||||| ||| ||| | |||| ||||| | Sbjct 812 GCCAGCAACCTGGCATACAAAGTACTGAAAAAGAAATTCGATGACACCAAAACATGGTAT 871 Query 10946 GTTGAT 10951 |||||| Sbjct 872 GTTGAT 877 >seq36779 Length=13892 Score = 138 bits (152), Expect = 1e-28 Identities = 165/224 (74%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 11218 ACCAGCGACAGTTTGGCCAGAGTTTTTGAAAAGGGTGAATGATCATGGGCTTGATTGGGA 11277 |||||| || | ||| |||||| || || | || ||||| |||||| | ||| Sbjct 5321 ACCAGCTACTGCGTGGAAAGAGTTCATGCAACGAGTCAATGACCATGGGTTGTCCCAGGA 5380 Query 11278 AAGTTTAGTAATTGGTCTTAAGGCTAAAGAGAGGGAATTGAAAGATGCTGGGAGGttttt 11337 | | || ||||| || | || ||||||||||| ||||| || || ||||||| Sbjct 5381 CTCTCTTGTCATTGGACTCAGGGGGAAAGAGAGGGAGATGAAAAGAGCGGGTCGGTTTTT 5440 Query 11338 ttCATTAATGAGCTGGGAGCTGAGGGAGTACTTCGTATTTACTGAATACCTAATTAAAGA 11397 || | ||| ||||||| || | || |||||||| |||| ||||| || || || || Sbjct 5441 AGCACTTATGTCCTGGGAGTTGCGAGAATACTTCGTGATTACAGAATATCTTATCAAGGA 5500 Query 11398 GCATTTTGTACCATTATTTAAGGGTCTGACTATGGCTGATGACT 11441 ||| ||||| |||||||||||||||||||||||||| ||||||| Sbjct 5501 GCACTTTGTCCCATTATTTAAGGGTCTGACTATGGCCGATGACT 5544 >seq46121 Length=3043 Score = 125 bits (138), Expect = 7e-25 Identities = 330/497 (66%), Gaps = 14/497 (3%) Strand=Plus/Minus Query 11191 AAGAGTGTTAAAAACATTGTTGGAAAAACCAGCGACAGTTTGGCCAGAGTTTTTGAAAAG 11250 |||||| ||||| || | | || ||||| || ||||| ||| ||| || | | || Sbjct 1507 AAGAGTCTTAAAGACCCTCATAGACAAACCTGCCACAGTCTGGAAAGACTTCCTCCAGAG 1448 Query 11251 GGTGAATGATCATGGGCTTGATTGGGAAAGTTTAGTAATTGGTCTTAAGGCTAAAGAGAG 11310 | | ||||| | || ||| | || | |||| || || | | | |||||| | Sbjct 1447 GATTAATGACGAGGGACTTCCTGAAGACTCTCTAGTCATCGGATTGAGGAGAAAAGAGCG 1388 Query 11311 GGAATTGAAAGATGCTGGGAGGtttttttCAT-TAATGAGCTGGGAGCTGAGGGAGTACT 11369 ||| ||||| | ||| | ||||||| | | |||| ||| ||| | || | Sbjct 1387 GGACTTGAAGCGGGTCGGGCGTTTTTTTTGCTCTCATGACCTGAGAG-------AATATT 1335 Query 11370 TCGTATTTACTGAATACCTAATTAAAGAGCATTTTGTACCATTATTTAAGGGTCTGACTA 11429 |||| |||||||||||||||| ||||| ||||| || ||| | || | || || |||| Sbjct 1334 TCGTCGTTACTGAATACCTAATCAAAGAACATTTCGTTCCACTGTTCCAAGGCCTCACTA 1275 Query 11430 TGGCTGATGA-CTTACAAACAGTTATTAAGAAGATGATAGATGTGTCTTCTGGTCAAGGC 11488 |||| ||||| || || | || | |||| || | || || ||| ||||| Sbjct 1274 TGGCGGATGACCTCACCGA-GGTGACACGGAAGGTGTTGAATAATTCAGATGGGCAAGGA 1216 Query 11489 ACT-GAGA-CATATGAGAATATCACCATTGCAAATAACATAGATTATGAGAAATGGAATA 11546 | ||| || ||||| | |||||| || ||||||| || || |||||||| | Sbjct 1215 TGTCCAGATTATTCAAGAATTT--GCATTGCTAACCACATAGACTACGAAAAATGGAACA 1158 Query 11547 ATTATCAAAGGTATGAATCTAATCATGCAATATTCACAGTGATGGGGCAATTTTTAGGGT 11606 | ||||| || | ||||| || || | ||| ||||||||| || || ||| | Sbjct 1157 ACCATCAACGGAAAGAATCCAACCAACATGTCTTCCAAGTGATGGGCCAGTTCCAAGGAT 1098 Query 11607 ATCCAAAGTTAATTGCAAGAACTCATGAGTTTTTTGAGAAAAGCCTAGTTTATTATAACC 11666 | ||||| |||| | || |||||||| || ||||| || || || || |||||| Sbjct 1097 ACCCAAATCTAATCACCAGGACTCATGACTTCTTTGAAAAGAGTCTGGTGTATTATGTTG 1038 Query 11667 AAAGACCTGACTTAATG 11683 || ||| ||||||||| Sbjct 1037 GAATACCAGACTTAATG 1021 >seq53828 Length=2951 Score = 86.0 bits (94), Expect = 6e-13 Identities = 220/325 (68%), Gaps = 10/325 (3%) Strand=Plus/Minus Query 11732 TGGGAAGGTCAGAAAGGTGGACTGGAGGGATTAAGGCAGAAAGGGTGGAGTGTGGTGAAT 11791 ||| | || ||||| || |||||||| ||||| || || |||||||||||| | || ||| Sbjct 2554 TGGAATGGACAGAAGGGAGGACTGGAAGGATTCAGACAAAAAGGGTGGAGTATTGTAAAT 2495 Query 11792 CTATTAATGATAGAGAGAGAAGTAAAAATAAG-AAACACGTTAGTTAAGGTCTTAGCCCA 11850 ||||| |||| |||| ||| ||| |||||| |||||| || || || || Sbjct 2494 TACTTAATATTAGA-AGAGTAGTCCTCGAAAGTTAACACGAAAGTTAATGTTTTGGCTCA 2436 Query 11851 GGGTGATAATCAAACAATAACAACACATTATAAA--ACAGAAACATTTCATCAAGAGA-A 11907 ||| ||||||||| || || ||||| ||| ||| || | | | ||||| | | Sbjct 2435 GGGGGATAATCAAGTCATCTGCACCCATTACAAAGGTCAGCAAGA--TAACCAAGACAGA 2378 Query 11908 TGAATTGATGGAGCATATAAAAAATATAGTTAGTAATAATAATGCAATCATGGAAAGTAT 11967 ||| | | || ||| ||| || || ||||| || | | ||||||| ||| Sbjct 2377 CACCTTGCAGAAAGAT-TAAGAAACATTTGGAGAAATAACAACCTATTAATGGAAAATAT 2319 Query 11968 AATAATAGGGACAAGAAAGCTAGGGCTAAGGATAAATGAAGACGAGACAATGCAGTC-AC 12026 | |||| | ||| || |||| |||| || |||||||| || || | || || | Sbjct 2318 CAGGATAGCGGCAAATAAAATAGGACTAATAATCAATGAAGATGAAACTCTCCAATCTGC 2259 Query 12027 CGGATTATATAAACTATGGAAAGGT 12051 | ||| | |||| |||||||| || Sbjct 2258 CACATT-TTTAAATTATGGAAAAGT 2235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 51335314163968