Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_028241.1 Length=14478 Score E Sequences producing significant alignments: (Bits) Value seq263735 174 1e-39 seq46121 113 4e-21 seq36779 86.0 6e-13 >seq263735 Length=2160 Score = 174 bits (192), Expect = 1e-39 Identities = 395/580 (68%), Gaps = 28/580 (5%) Strand=Plus/Plus Query 9648 AGGGAAAGAGAGGGAATTGAA-AGAAGCCGGACGATTCTTTTCCTTAATGTCCTGGGAAT 9706 ||| |||||| ||||| |||| |||| | | |||| ||| |||||||||| |||| | Sbjct 1230 AGGTAAAGAGCGGGAAATGAAGAGAATAGGTA-GATTTTTTACCTTAATGTCATGGGCCT 1288 Query 9707 TAAGGGAATATTTCGTTGTAACTGAATTACTGATTAAACAACATTAT-GTAAAGTTGTTC 9765 || | || ||||| || | || ||||| | || ||| ||| || | || ||| || Sbjct 1289 TACGTGAGTATTTTGTGTTGACCGAATTTTTAATAAAAAAACTTTTTTGTCCCGTTATTT 1348 Query 9766 AAAGGTTTGACCATGGCAGATGATCTCCAAACTGTCATAA---AGAAAATGCTTGATACC 9822 | | | |||||||| ||||||||| |||| ||| |||| ||| | ||| Sbjct 1349 GATAGACTAACCATGGCTGATGATCTC---ACTGAAGTAACTAAGAAGATGATGAATAAT 1405 Query 9823 TCACATGGTCAGGGAACCCGTACATATGATGC---CATCACCATTGCCAATAACATAGAC 9879 || ||||||| ||| || || || || | |||| ||||| || |||| || Sbjct 1406 TCTGATGGTCAAGGATGCC---CAGATTATTCACGCATCTGTATTGCTAACCACATTGAT 1462 Query 9880 TATGAAAAATGGAATAATTATCAGAGAATGGAATCAAACGGTCCTGTATTCAGAGTAATG 9939 ||| ||||||||||||| | ||||||| ||| || ||| |||||| ||||| ||| Sbjct 1463 TATACAAAATGGAATAATCACCAGAGAAAGGAGTCCAACAAGTATGTATTTAGAGTGATG 1522 Query 9940 GGTCAATTCTTGGGATATCCTAATTTGATACTCAGGACCCATGAGTTTTTTCAGAAAAGT 9999 |||||||| || ||||| || | | ||||| |||| ||||| |||||| | ||||| Sbjct 1523 GGTCAATTTTTAGGATACCCAAGTCTGATAGAACGGACTCATGAATTTTTTGAAAAAAGC 1582 Query 10000 TTAATTTATTA--TAATCAAAGACCTGATTTGATGAGAGTAGTTG--GGAAAAGTGCTAT 10055 | |||||||| || | | || ||||| ||| ||| | |||| ||| | Sbjct 1583 CTTATTTATTACGTAGCC--CGTCCGGATTTAATGGTCGTAAGAGACGGAACCCTGCAA- 1639 Query 10056 GAACAGTA---CTAAACATATCGTGTGCTGGGAAGGGCAGCTGGGTGGTTTAGAAGGGCT 10112 |||| | | |||| |||||||| ||| | || ||| ||||| | || || || Sbjct 1640 -AACAAAACCCCAGAACAGATCGTGTGTTGGAAGGGCCAGAAAGGTGGGCTGGAGGGACT 1698 Query 10113 GAGACAAAAGGGGTGGAGTGTTGTCAATTATTTAATGATTGAACGAGA-ATCTAAAGTAA 10171 ||||| || || ||||| |||| |||||||| || | ||| ||| || ||| | Sbjct 1699 CAGACAGAAAGGATGGAGCATTGTAAATTATTTGATTCTAGAAGAAGAGGCCTCAAG-AG 1757 Query 10172 GAAACACCTTAGTGAAAGTGTTGGCTCAGGGAGACAACCA 10211 ||| ||| ||| || || || || || ||||| || || Sbjct 1758 TAAATACCAAAGTAAATGTTTTAGCCCAAGGAGATAATCA 1797 >seq46121 Length=3043 Score = 113 bits (124), Expect = 4e-21 Identities = 331/507 (65%), Gaps = 26/507 (5%) Strand=Plus/Minus Query 9652 AAAGAGAGGGAATTGAAAGAAGCCGGACGATTCTTTTCCT-TAATGTCCTGGGAATTAAG 9710 |||||| |||| ||||| | ||| || || |||| || | ||| |||| || Sbjct 1395 AAAGAGCGGGACTTGAAGCGGGTCGGGCGTTTTTTTTGCTCTCATGACCTGAGA------ 1342 Query 9711 GGAATATTTCGTTGTAACTGAATTACTGATTAAACAACATTATGTAAAGTTGTTCAAAGG 9770 ||||||||||| || ||||||| || || ||| |||||| || ||||| |||| Sbjct 1341 -GAATATTTCGTCGTTACTGAATACCTAATCAAAGAACATTTCGTTCCACTGTTCCAAGG 1283 Query 9771 TTTGACCATGGCAGATGATCTCCAAACTGTCATAAAGAAAATGCTTGATACCTCACATGG 9830 | || ||||| ||||| ||| || | | ||| || | ||| ||| |||| Sbjct 1282 CCTCACTATGGCGGATGACCTCACCGAGGTGACACGGAAGGTGTTGAATAATTCAGATGG 1223 Query 9831 TCAGGGAACCCGTACATATGATGCCATCAC---CATTGCCAATAACATAGACTATGAAAA 9887 || ||| || || || || | | | |||||| || |||||||||| ||||| Sbjct 1222 GCAAGGAT---GTCCAGATTATTCAAGAATTTGCATTGCTAACCACATAGACTACGAAAA 1166 Query 9888 ATGGAATAATTATCAGAGAATGGAATCAAACGGTCCTGTATTCAGAGTAATGGGTCAATT 9947 |||||| || |||| | | ||||| ||| | ||| ||| ||| ||||| || || Sbjct 1165 ATGGAACAACCATCAACGGAAAGAATCCAACCAACATGTCTTCCAAGTGATGGGCCAGTT 1106 Query 9948 CTTGGGATATCCTAATTTGATACTCAGGACCCATGAGTTTTTTCAGAAAAGTTTAATTTA 10007 | ||||| || ||| | || |||||| ||||| || ||| | || ||| | | || Sbjct 1105 CCAAGGATACCCAAATCTAATCACCAGGACTCATGACTTCTTTGAAAAGAGTCTGGTGTA 1046 Query 10008 TTATAATCAAAGACCTGATTTGATG---AGAGTAGTTGGGAAAAGTGCTATGAACAGTA- 10063 |||| | || ||| || || ||| | || ||||| || | | || || Sbjct 1045 TTATGTTGGAATACCAGACTTAATGCTCCAACGAGATGGGA------CTTTAATCAATAA 992 Query 10064 --CTAAACATATCGTGTGCTGGGAAGGGCAGCTGGGTGGTTTAGAAGGGCTGAGACAAAA 10121 | ||| | || |||||| | || || || | | | ||||| || || |||| Sbjct 991 GGAAAGACACGTTGTCTGCTGGAACGGCCAATCAGGAGATCTGGAAGGCCTCAGGTAAAA 932 Query 10122 GGGGTGGAGTGTTGTCAATTATTTAAT 10148 ||| ||||||||| | |||||| |||| Sbjct 931 GGGCTGGAGTGTTCTTAATTATCTAAT 905 >seq36779 Length=13892 Score = 86.0 bits (94), Expect = 6e-13 Identities = 383/604 (63%), Gaps = 42/604 (7%) Strand=Plus/Plus Query 9634 GTAATTGGCCTTAAAGGGAAAGAGAGGGAATTGAAAGAAGCCGGACGATTCTTTTCCTTA 9693 || ||||| || | |||||||||||||| ||||| ||| || || || || | | Sbjct 5388 GTCATTGGACTCAGGGGGAAAGAGAGGGAGATGAAAAGAGCGGGTCGGTTTTTAGCACTT 5447 Query 9694 ATGTCCTGGGAATTAAGGGAATATTTCGTTGTAACTGAATTACTGATTAAACAACATTAT 9753 ||||||||||| || | ||||| ||||| | || |||| || || || | || | | Sbjct 5448 ATGTCCTGGGAGTTGCGAGAATACTTCGTGATTACAGAATATCTTATCAAGGAGCACTTT 5507 Query 9754 GTAAAGTTGTTCAAAGGTTTGACCATGGCAGATGATCTCCAAACTGTCATAAAGAAAATG 9813 || || || || ||| |||| ||||| ||||| ||| Sbjct 5508 GTCCCATTATTTAAGGGTCTGACTATGGCCGATGAC----------TCA----------- 5546 Query 9814 CTTGATACCTCACATGGTCA-GGGAACCCGTACATATGATGCCATCACCATTGCCAATAA 9872 ||| ||| |||| || ||| || || ||| | ||| | || ||| | Sbjct 5547 ----ATAACTCCGATGGACAAGGGTGTCCAGAC-TATACTAAAATCTGTGTAGCGAATCA 5601 Query 9873 CATAGACTATGAAAAATGGAATAATTATCAGAGAATGGAATCAAACGGTCCTGTATTCAG 9932 || ||||||||||||||||| || || | | |||||| ||||||| | Sbjct 5602 TATCGACTATGAAAAATGGAACAACCATAAC----TCCAATCAATA-----TGTATTCCG 5652 Query 9933 AGTAATGGGTCAATTCTTGGGATATCCTAATTTGATACTCAGGACCCATGAGTTTTTTCA 9992 || ||||| || || ||||| || ||| || | || |||||||||| || ||| | Sbjct 5653 TGTCATGGGCCAGTTTTTGGGTTACCCTCATCTAATTGAACGGACCCATGAATTCTTTGA 5712 Query 9993 GAAAAGTTTAATTTATTATAATCAAAGACCTGATTTGATGAGAGTAGTTGGGAAAAGTGC 10052 |||||||||||||||||| | || ||| |||||| | | ||| | | Sbjct 5713 GAAAAGTTTAATTTATTACGTCGGTCGTCCCGATCTGATGATCCAA--AGAGAAGACACC 5770 Query 10053 T--ATGAACAGTACTAAACATATCGTGTGCTGGGAAGGGCAGCTGGGTGGTTTAGAAGGG 10110 | | |||| | | | | || || |||||| | || ||| |||||| | || ||| Sbjct 5771 TTCCTCAACAAGATTGGAGAGATTGTTTGCTGGAACGGACAGGCTGGTGGTCTGGAGGGG 5830 Query 10111 CTGAGACAAAAGGGGTGGAGTGTTGTCAATTATTTAATGATTGAACGAGAATCTAAAGTA 10170 || | || ||||| ||||| ||| | |||||| | || | || || || | || | Sbjct 5831 CTCTGCCAGAAGGGATGGAGCGTTCTGAATTATCTCATTCTGGATGATGAGTC-AGAGAA 5889 Query 10171 -AGAAACACCTTAGTGAAAGTGTTGGCTCAGGGAGACAACCAAACGATTACAACCCACTA 10229 | ||| ||| ||||| || |||| || ||||| || || ||| |||||||| Sbjct 5890 GAAAAATACCAATGTGAACGTCCTGGCCCAAGGAGATAATCAGGTCATTTGTACCCACTA 5949 Query 10230 TAAA 10233 ||| Sbjct 5950 CAAA 5953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 46056987564728