Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_028246.1 Length=14627 Score E Sequences producing significant alignments: (Bits) Value seq263735 190 2e-44 >seq263735 Length=2160 Score = 190 bits (210), Expect = 2e-44 Identities = 348/505 (69%), Gaps = 6/505 (1%) Strand=Plus/Plus Query 9753 CTGGTAATAGGACTAAAAGCTAAAGAGAGAGAATTAAAGATAGAAGGTAGAtttttttCA 9812 || || |||||||| || ||||||| | ||| | |||| | ||||||||||||| | Sbjct 1213 CTAGTTATAGGACTCCGAGGTAAAGAGCGGGAAATGAAGAGAATAGGTAGATTTTTTACC 1272 Query 9813 TTGATGTCATATGACATGAGGGATTACTTCGTAATGACTGAATATTTGATaaaaaaa-TA 9871 || ||||||| | | | | || || || || |||| |||| ||| ||||||||| | Sbjct 1273 TTAATGTCATGGGCCTTACGTGAGTATTTTGTGTTGACCGAATTTTTAATAAAAAAACTT 1332 Query 9872 TTATGTACCATTATTCAAAGGATTGACCATGGCTGATGATCAAAATACAGTAGTAAAGAA 9931 || ||| || ||||| | || | |||||||||||||||| | | |||| ||||| Sbjct 1333 TTTTGTCCCGTTATTTGATAGACTAACCATGGCTGATGATCTCACTGAAGTAACTAAGAA 1392 Query 9932 AATGCTCAAAGTTTCTAAAGGTCAAGGGCTAACAGATTATAAAGAGATAACATTTGCTAA 9991 ||| | || |||| | |||||||| |||||||| | || ||||||| Sbjct 1393 GATGATGAATAATTCTGATGGTCAAGGATGCCCAGATTATTCACGCATCTGTATTGCTAA 1452 Query 9992 TCACTTGGATTATGAGAAGTGGAATAATTATCAAAGGAGGGAATCAAACGGTCCGGTGTT 10051 ||| | |||||| || ||||||||| | || || | ||| || ||| || || Sbjct 1453 CCACATTGATTATACAAAATGGAATAATCACCAGAGAAAGGAGTCCAACAAGTATGTATT 1512 Query 10052 CAGAGTAATGGGCCAGTTTTTAGGTCTACCTCACT-TAATAGAAAGAACTCACGAGTTCT 10110 ||||| ||||| || |||||||| |||| | | | |||||| | ||||| || || | Sbjct 1513 TAGAGTGATGGGTCAATTTTTAGG-ATACCCAAGTCTGATAGAACGGACTCATGAATTTT 1571 Query 10111 TTGAAAATAGTCTAATTTATTACAATGGCCGACCTGATTTAATGTATGTCAGAAATAAAG 10170 ||||||| || || ||||||||| | ||| || ||||||||| || ||| | | Sbjct 1572 TTGAAAAAAGCCTTATTTATTACGTAGCCCGTCCGGATTTAATGGTCGTAAGAGACGGAA 1631 Query 10171 TTGTACACTCCAAA---GGTGATGACATCGTTTGCTGGGAAGGACAAAAAGGAGGATTAG 10227 | || |||| || | ||||| || ||| | || || ||||| || | | Sbjct 1632 CCCTGCAAAACAAAACCCCAGAACAGATCGTGTGTTGGAAGGGCCAGAAAGGTGGGCTGG 1691 Query 10228 AGGGTCTAAGACAAAAAGGATGGAG 10252 |||| || ||||| ||||||||||| Sbjct 1692 AGGGACTCAGACAGAAAGGATGGAG 1716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 46532196424720