Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_028255.1 Length=11003 Score E Sequences producing significant alignments: (Bits) Value seq263735 205 6e-49 seq46121 165 6e-37 seq36779 132 3e-27 seq22788 129 4e-26 seq250369 105 5e-19 seq110009 78.8 7e-11 >seq263735 Length=2160 Score = 205 bits (226), Expect = 6e-49 Identities = 430/626 (69%), Gaps = 20/626 (3%) Strand=Plus/Plus Query 6152 CGATGAAGATTTGGTGATTGGTCTCAAAGGAAAAGAGAGAGAATTGAAACTAGCCGGAAG 6211 |||||| | | || || || ||| ||| |||||| | ||| |||| | || || Sbjct 1203 CGATGAGTCTCTAGTTATAGGACTCCGAGGTAAAGAGCGGGAAATGAAGAGAATAGGTAG 1262 Query 6212 ATTCTTTTCCTTGATGTCTTGGAAATTACGTGAATATTTTGTAATCACGGAATATCTTAT 6271 ||| ||| |||| ||||| ||| |||||||| |||||||| | || |||| | | || Sbjct 1263 ATTTTTTACCTTAATGTCATGGGCCTTACGTGAGTATTTTGTGTTGACCGAATTTTTAAT 1322 Query 6272 CAAAACACACTTT-GTCCCCATGTTCAAGGGACTAACCATGGCAGATGATCTAACTGCTG 6330 |||| || ||| ||||| | || | ||||||||||||| |||||||| |||| | Sbjct 1323 AAAAAAACTTTTTTGTCCCGTTATTTGATAGACTAACCATGGCTGATGATCTCACTGAAG 1382 Query 6331 TCATCaaaaaaaTGTTGGATACATCCTCA-GGTCAAGGATTGGACA-ATTACGAGTCCAT 6388 | | || || ||| || ||| || || | |||||||||| | || |||| ||| Sbjct 1383 TAACTAAGAAGATGATGAATA-ATTCTGATGGTCAAGGAT-GCCCAGATTATTCACGCAT 1440 Query 6389 TTGTATCGCGAATCACATTGATTATGAGAAATGGAACAACCATCAACGCAAGGAATCCAA 6448 ||||| || || |||||||||||| |||||||| || || || | ||||| ||||| Sbjct 1441 CTGTATTGCTAACCACATTGATTATACAAAATGGAATAATCACCAGAGAAAGGAGTCCAA 1500 Query 6449 TGGGCCTGTATTTCGTGTGATGGGACAGTTCCTAGGATACCCAAACCTGATTGAGAGGAC 6508 | ||||||| | |||||||| || || |||||||||||| ||||| || |||| Sbjct 1501 CAAGTATGTATTTAGAGTGATGGGTCAATTTTTAGGATACCCAAGTCTGATAGAACGGAC 1560 Query 6509 ACACGAATTCTTCGAGAAGAGCTTGATCTACTATAATGGACGTCCAGACTTAATGCAGGT 6568 || ||||| || || || ||| | || || || | ||||| || ||||| ||| Sbjct 1561 TCATGAATTTTTTGAAAAAAGCCTTATTTATTACGTAGCCCGTCCGGATTTAAT---GGT 1617 Query 6569 CTCGGGAAA---TACCCT---CATCAACAGGTCTAATCAATTGGTCTGCTGGCAGGGACA 6622 | || | ||||| | ||| | | | || | || || ||| |||| || Sbjct 1618 CGTAAGAGACGGAACCCTGCAAAACAAAACCCCAGAACAGATCGTGTGTTGGAAGGGCCA 1677 Query 6623 AGCAGGAGGGCTGGAAGGCCTTCGTCAGAAAGGATGGAGCATCCTGAACTTGCTAGTAAT 6682 ||| |||||||| || || | ||||||||||||||||| | || || | | | | Sbjct 1678 GAAAGGTGGGCTGGAGGGACTCAGACAGAAAGGATGGAGCATTGT-AAATTATTTG-ATT 1735 Query 6683 CCA-AAGAGAAG--CTAAAGTCCGAAACACAGCAGTCAAGGTGTTGGCACAAGGGGATAA 6739 | | |||| || || ||| ||| || ||| || || || || ||||| ||||| Sbjct 1736 CTAGAAGAAGAGGCCTCAAG-AGTAAATACCAAAGTAAATGTTTTAGCCCAAGGAGATAA 1794 Query 6740 TCAAGTGATTTGCACTCAATACAAGA 6765 ||| || ||||| ||||| || |||| Sbjct 1795 TCAGGTTATTTGTACTCATTATAAGA 1820 >seq46121 Length=3043 Score = 165 bits (182), Expect = 6e-37 Identities = 295/425 (69%), Gaps = 12/425 (3%) Strand=Plus/Minus Query 6243 GAATATTTTGTAATCACGGAATATCTTATCAAAACACACTTTGTCCCCATGTTCAAGGGA 6302 |||||||| || | || ||||| || |||||| ||| || || || ||||| | || Sbjct 1341 GAATATTTCGTCGTTACTGAATACCTAATCAAAGAACATTTCGTTCCACTGTTCCAAGGC 1282 Query 6303 CTAACCATGGCAGATGATCTAACTGCTGTCATCaaaaaaaTGTTGGATACATCCTCAGGT 6362 || || ||||| ||||| || || | || | || ||||| ||| || || Sbjct 1281 CTCACTATGGCGGATGACCTCACCGAGGTGACACGGAAGGTGTTGAATAATTCAGATGGG 1222 Query 6363 CAAGGATTGGACA-ATTA--CGAGTCCATTTGTATCGCGAATCACATTGATTATGAGAAA 6419 ||||||| | || |||| | || ||||| || || || ||||| || || || ||| Sbjct 1221 CAAGGAT-GTCCAGATTATTCAAGA--ATTTGCATTGCTAACCACATAGACTACGAAAAA 1165 Query 6420 TGGAACAACCATCAACGCAAGGAATCCAATGGGCCTGTATTTCGTGTGATGGGACAGTTC 6479 ||||||||||||||||| || |||||||| | ||| || | |||||||| |||||| Sbjct 1164 TGGAACAACCATCAACGGAAAGAATCCAACCAACATGTCTTCCAAGTGATGGGCCAGTTC 1105 Query 6480 CTAGGATACCCAAACCTGATTGAGAGGACACACGAATTCTTCGAGAAGAGCTTGATCTAC 6539 | |||||||||||| || || ||||| || || ||||| || ||||| || | || Sbjct 1104 CAAGGATACCCAAATCTAATCACCAGGACTCATGACTTCTTTGAAAAGAGTCTGGTGTAT 1045 Query 6540 TATAATGGACGTCCAGACTTAATGCAGGTCTCGGGAAAT---ACCCTCATCAACAGGTCT 6596 ||| |||| ||||||||||||| || || || || | ||||| | | Sbjct 1044 TATGTTGGAATACCAGACTTAATGC---TCCAACGAGATGGGACTTTAATCAATAAGGAA 988 Query 6597 AATCAATTGGTCTGCTGGCAGGGACAAGCAGGAGGGCTGGAAGGCCTTCGTCAGAAAGGA 6656 | || | ||||||||| | || ||| |||||| ||||||||||| | | || || Sbjct 987 AGACACGTTGTCTGCTGGAACGGCCAATCAGGAGATCTGGAAGGCCTCAGGTAAAAGGGC 928 Query 6657 TGGAG 6661 ||||| Sbjct 927 TGGAG 923 >seq36779 Length=13892 Score = 132 bits (146), Expect = 3e-27 Identities = 395/604 (65%), Gaps = 44/604 (7%) Strand=Plus/Plus Query 6165 GTGATTGGTCTCAAAGGAAAAGAGAGAGAATTGAAACTAGCCGGAAGATTCTTTTCCTTG 6224 || ||||| |||| || |||||||| || ||||| ||| || | || || | | Sbjct 5388 GTCATTGGACTCAGGGGGAAAGAGAGGGAGATGAAAAGAGCGGGTCGGTTTTTAGCACTT 5447 Query 6225 ATGTCTTGGAAATTACGTGAATATTTTGTAATCACGGAATATCTTATCAAAACACACTTT 6284 ||||| ||| | || || ||||| || || || || |||||||||||||| |||||| Sbjct 5448 ATGTCCTGGGAGTTGCGAGAATACTTCGTGATTACAGAATATCTTATCAAGGAGCACTTT 5507 Query 6285 GTCCCCATGTTCAAGGGACTAACCATGGCAGATGATCTAACTGCTGTCATCaaaaaaaTG 6344 ||||| | || ||||| || || ||||| ||||| |||| || Sbjct 5508 GTCCCATTATTTAAGGGTCTGACTATGGCCGATGAC-------------TCAATAAC--- 5551 Query 6345 TTGGATACATCCTCAGGTCAAGGAT-TGGACAAT-TACGAGTCCATTTGTATCGCGAATC 6402 ||| || ||||| | | | | | ||| | || ||| | ||||||| Sbjct 5552 ---------TCCGATGGACAAGGGTGTCCAGACTATACTAAA--ATCTGTGTAGCGAATC 5600 Query 6403 ACATTGATTATGAGAAATGGAACAACCATCAACGCAAGGAATCCAATGGGCCTGTATTTC 6462 | || || ||||| ||||||||||||||| ||| |||||| |||||| | Sbjct 5601 ATATCGACTATGAAAAATGGAACAACCAT-AAC--------TCCAATCAATATGTATTCC 5651 Query 6463 GTGTGATGGGACAGTTCCTAGGATACCCAAACCTGATTGAGAGGACACACGAATTCTTCG 6522 |||| ||||| ||||| | || ||||| | || ||||| |||| || |||||||| | Sbjct 5652 GTGTCATGGGCCAGTTTTTGGGTTACCCTCATCTAATTGAACGGACCCATGAATTCTTTG 5711 Query 6523 AGAAGAGCTTGATCTACTATAATGGACGTCCAGACTTAATGCAGGTCTCGGGAA-ATACC 6581 |||| || || || || || || ||||| || | ||| | | ||| | ||| Sbjct 5712 AGAAAAGTTTAATTTATTACGTCGGTCGTCCCGATCTGATG-ATCCAAAGAGAAGACACC 5770 Query 6582 CTCATCAACAGGTCTAATCAATTGGTCTGCTGGCAGGGACAAGCAGGAGGGCTGGAAGGC 6641 || |||||| | | | | || |||||| | ||||| || || || ||||| || Sbjct 5771 TTCCTCAACAAGATTGGAGAGATTGTTTGCTGGAACGGACAGGCTGGTGGTCTGGAGGGG 5830 Query 6642 CTTCGTCAGAAAGGATGGAGCATCCTGAACTTGCTAGTAATCCAAAGAGAAGCTAAAGTC 6701 || | ||||| ||||||||| | ||||| | || | | | || || | || Sbjct 5831 CTCTGCCAGAAGGGATGGAGCGTTCTGAATTATCTCATTCT-GGATGATGAGTCAGAG-A 5888 Query 6702 CGAAACACAGCA--GTCAAGGTGTTGGCACAAGGGGATAATCAAGTGATTTGCACTCAAT 6759 |||| | | || || || || |||| ||||| |||||||| || ||||| || || | Sbjct 5889 AGAAAAATACCAATGTGAACGTCCTGGCCCAAGGAGATAATCAGGTCATTTGTACCCACT 5948 Query 6760 ACAA 6763 |||| Sbjct 5949 ACAA 5952 >seq22788 Length=2006 Score = 129 bits (142), Expect = 4e-26 Identities = 214/306 (70%), Gaps = 10/306 (3%) Strand=Plus/Minus Query 6148 TAGACGATGAAGATTTGGTGATTGGTCTCAAAGGAAAAGAGAGAGAATTGAAACTAGCCG 6207 ||||||| | | ||||| || || || | ||| ||||| ||||| |||| || Sbjct 1824 TAGACGAAAATTACTTGGTTATCGGACTAAGAGGGAAAGAACGAGAAATGAAGAGGATCG 1765 Query 6208 GAAGATTCTTTTCCTTGATGTCTTGGAAATTACGTGAATATTTTGTAATCACGGAATATC 6267 |||||| || |||| ||||| |||||| | ||||| || ||||| ||||| || |||| Sbjct 1764 GAAGATATTTCGCCTTAATGTCATGGAAACTCCGTGAGTACTTTGTGATCACAGAGTATC 1705 Query 6268 TTATCAAAACACACTTTGTCCCCATGTTCAAGGGACTAACCATGGCAGATGATCTAACTG 6327 | ||||| | | | ||| || | |||||||| ||||| ||||| || |||||||| | Sbjct 1704 TGATCAAGAAGTATTATGTTCCGTTATTCAAGGGGCTAACAATGGCTGACGATCTAACCG 1645 Query 6328 CTGTCATCaaaaaaaTGTTGGATACATCCTCA-GGTCAAGGATTGGACAATTAC----GA 6382 || || ||||| ||| || | ||| | | |||||||||| | | ||| || Sbjct 1644 AGGTGATGAAAAAGATGATGAAC-CATTCAGATGGTCAAGGATGTGCAGACTACACCAGA 1586 Query 6383 GTCCATTTGTATCGCGAATCACATTGATTATGAGAAATGGAACAACCATCAACGCAAGGA 6442 ||| || || ||||| || || ||||| || ||||||||||| || || | || Sbjct 1585 GTC----TGCATAGCGAACCATATAGATTACACCAAGTGGAACAACCACCAGCGGATGGC 1530 Query 6443 ATCCAA 6448 ||||| Sbjct 1529 GTCCAA 1524 >seq250369 Length=726 Score = 105 bits (116), Expect = 5e-19 Identities = 244/368 (66%), Gaps = 16/368 (4%) Strand=Plus/Minus Query 6162 TTGGTGATTGGTCTCAAAGGAAAAGAGAGAGAATTGAAACTAGCCGGAAGATTCTTTTCC 6221 || || ||||| | | |||||||||| |||| |||| | ||||||||| || | Sbjct 490 TTAGTCATTGGGTTGAGAGGAAAAGAGGGAGAGATGAAGAGGGTCGGAAGATTTTTCGCT 431 Query 6222 TTGATGTCTTGGAAATTACGTGAATATTTTGTAATCACGGAATATCTTATCAAAACACAC 6281 | ||||||||| | | || | || ||||| | || || ||||| || ||| |||| Sbjct 430 CTAATGTCTTGGGATCTTCGGGTGTACTTTGTGCTAACAGAGTATCTCATTAAAGAACAC 371 Query 6282 TTTGTCCCCATGTTCAAGGGACTAACCATGGCAGATGATCTAACTGCTGTCATCaaaaaa 6341 ||||||||| | ||||| ||| | || ||||| ||||||| || | || | || ||| Sbjct 370 TTTGTCCCCCTATTCAAAGGATTGACAATGGCCAATGATCTGACCGAAGTTACCAGGAAA 311 Query 6342 aTG--TTGGATACATCCTCAGGTCAAGGATTGGACAATTACGAGTCCATTTGTATCGCGA 6399 ||| | ||| || || || || | | ||||| | || | ||| || | Sbjct 310 ATGAAAAAGTTAC-TCGGACGGGCAGGGTTGTCCCGATTACTCGAAGATCTCTATAGCAA 252 Query 6400 ATCACATTGATTATGAGAAATGGAACAACCATCAACGCAAGGAATCCAATGGGCCTGTAT 6459 || |||| ||||| | || ||||| || |||||||| ||||| || | Sbjct 251 ATTACATCGATTACAAAAAGTGGAATAATCATCAACGGAAGGA-------------GTCT 205 Query 6460 TTCGTGTGATGGGACAGTTCCTAGGATACCCAAACCTGATTGAGAGGACACACGAATTCT 6519 || || ||||| || ||| | || ||||| | ||| |||| | || || || |||| Sbjct 204 TTACCGTCATGGGTCAATTCTTGGGCTACCCTACCCTCATTGCCTGCACTCATGAGTTCT 145 Query 6520 TCGAGAAG 6527 | |||||| Sbjct 144 TTGAGAAG 137 >seq110009 Length=642 Score = 78.8 bits (86), Expect = 7e-11 Identities = 139/200 (70%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 6207 GGAAGATTCTTTTCCTTGATGTCTTGGAAATTACGTGAATATTTTGTAATCACGGAATAT 6266 ||||||||||| || | ||||| ||| || || ||||||||||| | || |||| Sbjct 419 GGAAGATTCTTCGCCCTAATGTCCTGGGCCTTGCGAGAATATTTTGTTTTGACCGAATTA 478 Query 6267 CTTATCAAAACACACTTTGTCCCCATGTTCAAGGGACTAACCATGGCAGATGATCTAACT 6326 | || |||| ||||| || | || | |||||||| ||||| |||||||| ||| Sbjct 479 TTGATAAAAAACTTTTTTGTTCCTTTATTTGATGGACTAACAATGGCCGATGATCTTACT 538 Query 6327 GCTGTCATCaaaaaaaTGTTGGATACATCCTCAGGTCAAGGATTGGACA-ATTACGAGTC 6385 | |||| || || ||| || | | ||| |||||||| || || ||||| | Sbjct 539 GAGGTCACGAAGAAGATGATGAACAACTCCGATGGTCAAGG-GTGCCCAGATTACTCGCG 597 Query 6386 CATTTGTATCGCGAATCACA 6405 || ||||| || ||||||| Sbjct 598 TATCTGTATAGCCAATCACA 617 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 34980450939808