Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_031079.1 Length=11843 Score E Sequences producing significant alignments: (Bits) Value seq22788 109 4e-20 seq42553 107 1e-19 seq36779 93.3 3e-15 >seq22788 Length=2006 Score = 109 bits (120), Expect = 4e-20 Identities = 233/341 (68%), Gaps = 14/341 (4%) Strand=Plus/Minus Query 6739 ATCAATGACGTTGGCTTACCAAGAAGATCTCT-GGTGATCGGGTTGAAGGGGAAGGAAAG 6797 ||||||||| |||||| | ||| || || ||| ||||| | | ||||| ||| | Sbjct 1840 ATCAATGACAACGGCTTAG-ACGAAAATTACTTGGTTATCGGACTAAGAGGGAAAGAACG 1782 Query 6798 GGAGATCAAGAAGAATGGGAGGTTCTTCGCACTCATGTCCTGGGACCTTCGGGAGTACTT 6857 || || |||| || || || | ||||| | ||||| ||| | || || |||||||| Sbjct 1781 AGAAATGAAGAGGATCGGAAGATATTTCGCCTTAATGTCATGGAAACTCCGTGAGTACTT 1722 Query 6858 TGTATCCACTGAATATCTTATTAAAATGTTCTATGTCCCTTTGTTCCAAGGTCTGACCAT 6917 ||| ||| || ||||| || || | || ||||| || || ||| | || || || || Sbjct 1721 TGTGATCACAGAGTATCTGATCAAGAAGTATTATGTTCCGTTATTCAAGGGGCTAACAAT 1662 Query 6918 GGCGGATGATCTGAACTCTGTCACCAAAAAGATCCTTGGGTGCACC-TTC----GGTCAA 6972 ||| || ||||| | | || | |||||||| | || ||| ||| |||||| Sbjct 1661 GGCTGACGATCTAACCGAGGTGATGAAAAAGAT-----GATGAACCATTCAGATGGTCAA 1607 Query 6973 GGGCTTGCAGGGTACACTGCAGT-TACATTCACTAACCACCTAGATTACGAAAAGTGGAA 7031 || ||||| ||||| ||| | || | | ||||| |||||||| |||||||| Sbjct 1606 GGATGTGCAGACTACACCAGAGTCTGCA-TAGCGAACCATATAGATTACACCAAGTGGAA 1548 Query 7032 CAACCATCAGAGGCGGGAGGCCACTGACCCGGTTTTCAGAG 7072 |||||| ||| || || | ||| | | |||||||||| Sbjct 1547 CAACCACCAGCGGATGGCGTCCAACAAACACGTTTTCAGAG 1507 >seq42553 Length=2057 Score = 107 bits (118), Expect = 1e-19 Identities = 115/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 6780 GTTGAAGGGGAAGGAAAGGGAGATCAAGAAGAATGGGAGGTTCTTCGCACTCATGTCCTG 6839 ||||| ||||||||| || ||||| || | | ||| || || || || ||||||||||| Sbjct 612 GTTGAGGGGGAAGGAGAGAGAGATGAAAAGGGTTGGAAGATTTTTTGCTCTCATGTCCTG 553 Query 6840 GGACCTTCGGGAGTACTTTGTATCCACTGAATATCTTATTAAAATGTTCTATGTCCCTTT 6899 ||| ||||| ||||||||||| ||| || || || || ||| | || ||||| || Sbjct 552 GGATCTTCGAGAGTACTTTGTCCTCACAGAGTACCTCATCAAAGAGCACTTCGTCCCCTT 493 Query 6900 GTTCCAAGGTCTGACCATGGCGGATGATCTGA 6931 |||| |||| | || ||||| || ||||||| Sbjct 492 GTTCAAAGGATTAACAATGGCCGACGATCTGA 461 >seq36779 Length=13892 Score = 93.3 bits (102), Expect = 3e-15 Identities = 137/189 (72%), Gaps = 4/189 (2%) Strand=Plus/Plus Query 6740 TCAATGACGTTGGCTTA-CCAAGAAGATCTCTGGTGATCGGGTTGAAGGGGAAGGAAAGG 6798 |||||||| ||| || || || | ||||| || || || | | |||||| || ||| Sbjct 5356 TCAATGACCATGGGTTGTCCCAGGAC-TCTCTTGTCATTGGACTCAGGGGGAAAGAGAGG 5414 Query 6799 GAGATCAAGAAGAATGGGA-GGTTCTTCGCACTCATGTCCTGGGACCTTCGGGAGTACTT 6857 ||||| || |||| ||| |||| || ||||| ||||||||||| | || || ||||| Sbjct 5415 GAGATGAA-AAGAGCGGGTCGGTTTTTAGCACTTATGTCCTGGGAGTTGCGAGAATACTT 5473 Query 6858 TGTATCCACTGAATATCTTATTAAAATGTTCTATGTCCCTTTGTTCCAAGGTCTGACCAT 6917 || || ||||||||||| || | || |||||| || || | |||||||| || Sbjct 5474 CGTGATTACAGAATATCTTATCAAGGAGCACTTTGTCCCATTATTTAAGGGTCTGACTAT 5533 Query 6918 GGCGGATGA 6926 ||| ||||| Sbjct 5534 GGCCGATGA 5542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 37659723191968