Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_031215.1 Length=12291 Score E Sequences producing significant alignments: (Bits) Value seq263735 215 4e-52 seq46121 125 6e-25 seq36779 109 4e-20 seq42553 98.7 8e-17 seq22788 84.2 2e-12 >seq263735 Length=2160 Score = 215 bits (238), Expect = 4e-52 Identities = 389/561 (69%), Gaps = 12/561 (2%) Strand=Plus/Plus Query 7362 TTTTTTCTCTCTGATGTCATGGGATTTGAGAGATTACTTTGTGATAACTGAATATCTAAT 7421 |||||| || | |||||||||| || | || || |||||| | || |||| | |||| Sbjct 1264 TTTTTTACCT-TAATGTCATGGGCCTTACGTGAGTATTTTGTGTTGACCGAATTTTTAAT 1322 Query 7422 CAAGACACATTTT-GTCCCTCTTTTCTATGGTCTAACTATGGCCGATGATATGACGACCG 7480 || | || |||| ||||| | || || | ||||| ||||| |||||| | || | Sbjct 1323 AAAAAAACTTTTTTGTCCCGTTATTTGATAGACTAACCATGGCTGATGATCTCACTGAAG 1382 Query 7481 TTGTGAGGAAGATGATGGAGAATACTAGCGGTCAGGGCTCTGATGATTATGAACACATCG 7540 | | |||||||||| | ||| || ||||| || | |||||| || |||| Sbjct 1383 TAACTAAGAAGATGATGAATAATTCTGATGGTCAAGGATGCCCAGATTATTCACGCATCT 1442 Query 7541 GAATTGCAAACCACCTTGATTACGAAAAATGGAACAACCATCAGAGATATCAGTCCACTG 7600 | ||||| |||||| ||||||| ||||||||| || || |||||| | |||||| Sbjct 1443 GTATTGCTAACCACATTGATTATACAAAATGGAATAATCACCAGAGAAAGGAGTCCAACA 1502 Query 7601 AGCCGGTATTTACGGTGATGGGAAAGTTTTTGGGTTATCCTAATTTGATTGCCAGGACCC 7660 || ||||||| |||||||| | ||||| || || || | | |||| | |||| | Sbjct 1503 AGTATGTATTTAGAGTGATGGGTCAATTTTTAGGATACCCAAGTCTGATAGAACGGACTC 1562 Query 7661 ATGAGTTCTTTGAAAAGAGTTTTATCTATCACGGAGGCAGAGCAGATTTAATGAAAGTTG 7720 |||| || |||||||| || |||| ||| ||| || | | | ||||||||| || | Sbjct 1563 ATGAATTTTTTGAAAAAAGCCTTATTTATTACGTAGCCCGTCCGGATTTAATG---GTCG 1619 Query 7721 TTA---ATGGATCGATTGTAAATAAGGACCCTGAAAGGATGGTTTGTTGGCAGGGTCAAA 7777 | | | ||| | | ||| || ||| ||| ||| || |||||| |||| || | Sbjct 1620 TAAGAGACGGAACCCTGCAAAACAAAACCCCAGAACAGATCGTGTGTTGGAAGGGCCAGA 1679 Query 7778 AAGGTGGGCTAGAAGGACTGAGACAGAAAGGGTGGAGTATCCTGAACTTGCTGGTGATAA 7837 |||||||||| || ||||| ||||||||||| ||||| || | || | || | | | Sbjct 1680 AAGGTGGGCTGGAGGGACTCAGACAGAAAGGATGGAGCATTGTAAATTATTTGATTCT-A 1738 Query 7838 GAAGAGAAGG--TCAAGATAGAAATACAAAAATTCGCTGCCTCGCCCAAGGAGATAATCA 7895 ||||| ||| |||||| |||||| ||| | | ||||||||||||||||| Sbjct 1739 GAAGAAGAGGCCTCAAGA-GTAAATACCAAAGTAAATGTTTTAGCCCAAGGAGATAATCA 1797 Query 7896 GGTCATATGCACACAATACAA 7916 ||| || || || || || || Sbjct 1798 GGTTATTTGTACTCATTATAA 1818 >seq46121 Length=3043 Score = 125 bits (138), Expect = 6e-25 Identities = 226/329 (69%), Gaps = 6/329 (2%) Strand=Plus/Minus Query 7388 TGAGAGATTACTTTGTGATAACTGAATATCTAATCAAGACACATTTTGTCCCTCTTTTCT 7447 ||||||| || || || | |||||||| |||||||| |||||| || || || ||| Sbjct 1346 TGAGAGAATATTTCGTCGTTACTGAATACCTAATCAAAGAACATTTCGTTCCACTGTTCC 1287 Query 7448 ATGGTCTAACTATGGCCGATGATATGACGACCGTTGTGA---GGAAGATGATGGAGAATA 7504 | || || |||||||| ||||| | || || |||| ||||| || || | ||| Sbjct 1286 AAGGCCTCACTATGGCGGATGACCTCAC---CGAGGTGACACGGAAGGTGTTGAATAATT 1230 Query 7505 CTAGCGGTCAGGGCTCTGATGATTATGAACACATCGGAATTGCAAACCACCTTGATTACG 7564 | || || || | | |||||| | || | ||||| |||||| | || |||| Sbjct 1229 CAGATGGGCAAGGATGTCCAGATTATTCAAGAATTTGCATTGCTAACCACATAGACTACG 1170 Query 7565 AAAAATGGAACAACCATCAGAGATATCAGTCCACTGAGCCGGTATTTACGGTGATGGGAA 7624 ||||||||||||||||||| | | | |||| | | || || |||||||| Sbjct 1169 AAAAATGGAACAACCATCAACGGAAAGAATCCAACCAACATGTCTTCCAAGTGATGGGCC 1110 Query 7625 AGTTTTTGGGTTATCCTAATTTGATTGCCAGGACCCATGAGTTCTTTGAAAAGAGTTTTA 7684 |||| || || || ||| | || ||||||| ||||| ||||||||||||||| | Sbjct 1109 AGTTCCAAGGATACCCAAATCTAATCACCAGGACTCATGACTTCTTTGAAAAGAGTCTGG 1050 Query 7685 TCTATCACGGAGGCAGAGCAGATTTAATG 7713 | ||| | | || | | |||| |||||| Sbjct 1049 TGTATTATGTTGGAATACCAGACTTAATG 1021 >seq36779 Length=13892 Score = 109 bits (120), Expect = 4e-20 Identities = 382/600 (64%), Gaps = 65/600 (11%) Strand=Plus/Plus Query 7332 GAAGGAGAGAGAGATCAAAATTAACGGTCGTTTTTTCTCTCTGATGTCATGGGATTTGAG 7391 ||| ||||| ||||| |||| ||||| ||||| | || ||||| ||||| ||| | Sbjct 5405 GAAAGAGAGGGAGATGAAAAGAGCGGGTCGGTTTTTAGCACTTATGTCCTGGGAGTTGCG 5464 Query 7392 AGATTACTTTGTGATAACTGAATATCTAATCAAGACACATTTTGTCCCTCTTTTCTATGG 7451 ||| ||||| ||||| || |||||||| |||||| || |||||||| | || | || Sbjct 5465 AGAATACTTCGTGATTACAGAATATCTTATCAAGGAGCACTTTGTCCCATTATTTAAGGG 5524 Query 7452 TCTAACTATGGCCGATGA---TATGACGACCGTTGTGAGGAAGATGATGGAGAATACTAG 7508 ||| |||||||||||||| || || | |||||| Sbjct 5525 TCTGACTATGGCCGATGACTCAATAACTCC---------------GATGGA--------- 5560 Query 7509 CGGTCAGGGCTCTGATGATTATGAACACATCGGAATTGCAAACCACCTTGATTACGAAAA 7568 || || | | || ||| | ||| | | || || || | || || ||||| Sbjct 5561 ----CAAGGGTGTCCAGACTATACTAAAATCTGTGTAGCGAATCATATCGACTATGAAAA 5616 Query 7569 ATGGAACAACCATCAGAGATATCAGTCCACTGAGCCGGTATTTACGGTGATGGGAAAGTT 7628 ||||||||||| || | |||| | | ||||| || ||||| |||| Sbjct 5617 ATGGAACAACC---------ATAACTCCAATCAATATGTATTCCGTGTCATGGGCCAGTT 5667 Query 7629 TTTGGGTTATCCTAATTTGATTGCCAGGACCCATGAGTTCTTTGAAAAGAGTTTTATCTA 7688 ||||||||| ||| || | |||| |||||||||| |||||||| || ||||| || || Sbjct 5668 TTTGGGTTACCCTCATCTAATTGAACGGACCCATGAATTCTTTGAGAAAAGTTTAATTTA 5727 Query 7689 TCACGGAGGCAGAGCAGATTTAATGA---AAGTTGTTAATGGATCGATTGTAAATAAGGA 7745 | ||| || | | ||| | |||| || | | | | | | || ||| Sbjct 5728 TTACGTCGGTCGTCCCGATCTGATGATCCAAAGAG---AAGACACCTTCCTCAACAAG-- 5782 Query 7746 CCCTGAAAGGATGGTTTGTTGGCAGGGTCAAAAAGGTGGGCTAGAAGGACTGAGACAGAA 7805 || | ||| ||||| ||| | || || ||||| || || || || | ||||| Sbjct 5783 -ATTGGAGAGATTGTTTGCTGGAACGGACAGGCTGGTGGTCTGGAGGGGCTCTGCCAGAA 5841 Query 7806 AGGGTGGAGTATCCTGAA------CTTGCTGG-TGATAAG-AAGAGAAGGTCAAGATAGA 7857 || ||||| | ||||| | | |||| |||| || ||||||| | | Sbjct 5842 GGGATGGAGCGTTCTGAATTATCTCATTCTGGATGATGAGTCAGAGAAG--------AAA 5893 Query 7858 AATACAAAAATTCGCTGCCTCGCCCAAGGAGATAATCAGGTCATATGCACACAATACAAA 7917 ||||| || | | ||| ||||||||||||||||||||||| || || || |||||| Sbjct 5894 AATACCAATGTGAACGTCCTGGCCCAAGGAGATAATCAGGTCATTTGTACCCACTACAAA 5953 >seq42553 Length=2057 Score = 98.7 bits (108), Expect = 8e-17 Identities = 177/261 (68%), Gaps = 12/261 (5%) Strand=Plus/Minus Query 7323 GTTGAAAGAGAAGGAGAGAGAGATCAAAATTAACGGTCGTTTTTTCTCTCTGATGTCATG 7382 ||||| | ||||||||||||||| |||| || | ||||| |||| ||||| || Sbjct 612 GTTGAGGGGGAAGGAGAGAGAGATGAAAAGGGTTGGAAGATTTTTTGCTCTCATGTCCTG 553 Query 7383 GGATTTGAGAGATTACTTTGTGATAACTGAATATCTAATCAAGACACATTTTGTCCCTCT 7442 |||| | |||| |||||||| | || || || || ||||| || || ||||| | Sbjct 552 GGATCTTCGAGAGTACTTTGTCCTCACAGAGTACCTCATCAAAGAGCACTTCGTCCCCTT 493 Query 7443 TTTCTATGGTCTAACTATGGCCGATGATATGACGACCGTTGTGAGGAAGATGATGGAGAA 7502 ||| | || |||| |||||||| ||| |||| ||| |||||||||||| | || Sbjct 492 GTTCAAAGGATTAACAATGGCCGACGATCTGACTGAGGTTACAAGGAAGATGATGAACAA 433 Query 7503 TACTAGCGGTCAGGGCTCTGATGATTATGAACACATCGGAATTGCAAACCACCTTGATTA 7562 | | | ||| || || || | | ||| | || ||||| ||| | ||||| Sbjct 432 TTCAAACGGACAAGGTTC------------AAAGATCTGCATAGCAAAACACATCGATTA 385 Query 7563 CGAAAAATGGAACAACCATCA 7583 ||| ||||| || ||||| Sbjct 384 TACAAAGTGGAATAATCATCA 364 >seq22788 Length=2006 Score = 84.2 bits (92), Expect = 2e-12 Identities = 184/273 (67%), Gaps = 2/273 (1%) Strand=Plus/Minus Query 7313 TGATTATCGGGTTGAAAGAGAAGGAGAGAGAGATCAAAATTAACGGTCGTTTTTTCTCTC 7372 || ||||||| | | || ||| || |||| || || | | ||| | | |||| | Sbjct 1809 TGGTTATCGGACTAAGAGGGAAAGAACGAGAAATGAAGAGGATCGGAAGATATTTCGCCT 1750 Query 7373 TGATGTCATGGGATTTGAGAGATTACTTTGTGATAACTGAATATCTAATCAAGACACATT 7432 | ||||||||| | | | || ||||||||||| || || ||||| ||||||| ||| Sbjct 1749 TAATGTCATGGAAACTCCGTGAGTACTTTGTGATCACAGAGTATCTGATCAAGAAGTATT 1690 Query 7433 TTGTCCCTCTTTTCTATGGTCTAACTATGGCCGATGATATGACGACCGTTGTGAGGAAGA 7492 ||| || | ||| | || ||||| ||||| || ||| | || || ||| |||| Sbjct 1689 ATGTTCCGTTATTCAAGGGGCTAACAATGGCTGACGATCTAACCGAGGTGATGAAAAAGA 1630 Query 7493 TGATGGAGAATACTAGCGGTCAGGGCTCTGATGATTATGAACACA-TCGGAATTGCAAAC 7551 ||||| | || | ||||| || | || || || | || | || | || || ||| Sbjct 1629 TGATGAACCATTCAGATGGTCAAGGATGTGCAGACTA-CACCAGAGTCTGCATAGCGAAC 1571 Query 7552 CACCTTGATTACGAAAAATGGAACAACCATCAG 7584 || | |||||| || ||||||||||| ||| Sbjct 1570 CATATAGATTACACCAAGTGGAACAACCACCAG 1538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 39088668393120