Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_031236.1 Length=11165 Score E Sequences producing significant alignments: (Bits) Value seq263735 102 6e-18 seq110009 84.2 2e-12 >seq263735 Length=2160 Score = 102 bits (112), Expect = 6e-18 Identities = 566/875 (65%), Gaps = 42/875 (5%) Strand=Plus/Plus Query 6259 AAAGAGAGGGAACTAAA-AGCACAGGGAAGATTCTTCTCCCTGCTTTCTTGGGTACTTA- 6316 |||||| ||||| | || || | ||| | |||| || || | | || |||| |||| Sbjct 1234 AAAGAGCGGGAAATGAAGAGAATAGGTA-GATTTTTTACCTTAATGTCATGGGC-CTTAC 1291 Query 6317 GAGAGTATTTTGTCGTAACGGAATATCTTATAAAGATCCATTTCC-TCCCTCTTTTTAAG 6375 | ||||||||||| | || |||| | | ||||| | | ||| |||| | ||| | Sbjct 1292 GTGAGTATTTTGTGTTGACCGAATTTTTAATAAAAAAACTTTTTTGTCCCGTTATTTGAT 1351 Query 6376 GGACTGACTATGGCTGATGACTTGACTACCCTCACCAAGAAGATGCTGGACACCTCCTCG 6435 |||| || ||||||||||| | ||| | || ||||||||| || | | || Sbjct 1352 AGACTAACCATGGCTGATGATCTCACTGAAGTAACTAAGAAGATGATGAATAATTCTGAT 1411 Query 6436 GGTCAAGGGTTA--AGTGGATACGACAAAATTAGTTATGCTAACCATTTGGATTATGAGA 6493 |||||||| | || || | || | | || ||||||||| | |||||| | Sbjct 1412 GGTCAAGGATGCCCAGATTATTC-ACGCATCT-GTATTGCTAACCACATTGATTATACAA 1469 Query 6494 AGTGGAACAATTATCAAAGGATTGAGTCCAACGGACCGGTCTTCAAAGTCATGGGACAGT 6553 | ||||| ||| | || || | ||||||||| || || | ||| ||||| || | Sbjct 1470 AATGGAATAATCACCAGAGAAAGGAGTCCAACAAGTATGTATTTAGAGTGATGGGTCAAT 1529 Query 6554 TTCTGGGGTATCCAAATCTTATATATCGAACACATGAGTTCTTCCAGAAAAGCATCATTT 6613 || | || || |||| ||| ||| | || || ||||| || || | |||||| | |||| Sbjct 1530 TTTTAGGATACCCAAGTCTGATAGAACGGACTCATGAATTTTTTGAAAAAAGCCTTATTT 1589 Query 6614 ACTACAATGATAGGCCGGATTTGATGGTAGTAGAGA-ACGGGA---TGATAGTGAATCGC 6669 | ||| | | |||||||| ||||| ||| ||| |||| | || | || | Sbjct 1590 ATTACGTAGCCCGTCCGGATTTAATGGTCGTA-AGAGACGGAACCCTGCAAAACAAAACC 1648 Query 6670 ACTGAAGAGAGAGTAGTGT-GGAACGGACAAGCTGGGGGATTGGAAGGATTAAGGCAGAA 6728 | ||| ||| || |||| |||| || || || || |||| ||| | || ||||| Sbjct 1649 CCAGAACAGATCGT-GTGTTGGAAGGGCCAGAAAGGTGGGCTGGAGGGACTCAGACAGAA 1707 Query 6729 AGGATGGAGTGTTTTGAATGCATTATCGATTGCCAG-AGA--GGGACGAGATAG-AAACA 6784 ||||||||| || | ||| | | |||| | || ||| || | | || ||| | Sbjct 1708 AGGATGGAGCATTGTAAAT---TATTTGATT-CTAGAAGAAGAGGCCTCAAGAGTAAATA 1763 Query 6785 CCAAGCTTGCTCTTTTGGCTCAAGGGGACAACCAAATTATCTTCACCAACTACAAGATGC 6844 |||| | | |||| || ||||| || || || |||| | || | || |||| || Sbjct 1764 CCAAAGTAAATGTTTTAGCCCAAGGAGATAATCAGGTTATTTGTACTCATTATAAGAGGC 1823 Query 6845 AGGATTACAGAGATGA--AAGA---GAGCTTAAGTGTAATCTGGAACGA-ATCAGGATCA 6898 | ||| || || |||| ||||||| | | | | | || ||| | Sbjct 1824 A-----ACA-AGGCGACCAAGATCGTAGCTTAAACCCACGGTTGGTCAATATTTGGAAAA 1877 Query 6899 ATAACGATCAGATTATGAAGTCCAT-AGAAAG--TGGAATAATAAAGCTTGGACTGAAAA 6955 |||||||| | ||||| | || |||| | || | ||||| | ||||| | || Sbjct 1878 ATAACGATATCCTGATGAAAGCGATCAGAAGGGCTGCA--GATAAA-ATAGGACTTATAA 1934 Query 6956 TCAATCAAGACGAGACAATGCAATCTGCTGATTTCACCAATTATGGTAAAATACCGATAA 7015 | || |||||||||||||||||| || ||| |||||||| ||| | | | | Sbjct 1935 TAAACGAAGACGAGACAATGCAATAAGCAACTTTTTTAAATTATGGGAAAGTCTTGTTCA 1994 Query 7016 TCCGAGGAAACATATACCCATTAGAGACAAAAAGATGGTCTAGGGCTGCTTGTGTGACTA 7075 | | ||||| || ||||||| ||||||| |||| | | | |||| || || | Sbjct 1995 TACTTGGAAATTTAATAGCATTAGAAACAAAAAAATGGAGTCGAGTAACTTGCGTCACCA 2054 Query 7076 ATGATCAGTTACCCAGCCTAGGAAATGTTATGTCT 7110 | || ||| | |||| | |||||| || ||||| Sbjct 2055 ACGACCAGGTCCCCACTTTGGGAAATATTTTGTCT 2089 >seq110009 Length=642 Score = 84.2 bits (92), Expect = 2e-12 Identities = 133/188 (71%), Gaps = 2/188 (1%) Strand=Plus/Plus Query 6259 AAAGAGAGGGAACT-AAAAGCACAGGGAAGATTCTTCTCCCTGCTTTCTTGGGTACTTAG 6317 |||||| | || | ||||| | ||| |||||||||| |||| | || |||| | | Sbjct 395 AAAGAGCGCGAGATGAAAAGGATAGG-AAGATTCTTCGCCCTAATGTCCTGGGCCTTGCG 453 Query 6318 AGAGTATTTTGTCGTAACGGAATATCTTATAAAGATCCATTTCCTCCCTCTTTTTAAGGG 6377 ||| |||||||| | || |||| | ||||| | | ||| | ||| | ||| | || Sbjct 454 AGAATATTTTGTTTTGACCGAATTATTGATAAAAAACTTTTTTGTTCCTTTATTTGATGG 513 Query 6378 ACTGACTATGGCTGATGACTTGACTACCCTCACCAAGAAGATGCTGGACACCTCCTCGGG 6437 ||| || ||||| ||||| | ||| |||| ||||||||| || ||| |||| || Sbjct 514 ACTAACAATGGCCGATGATCTTACTGAGGTCACGAAGAAGATGATGAACAACTCCGATGG 573 Query 6438 TCAAGGGT 6445 |||||||| Sbjct 574 TCAAGGGT 581 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35497167731296