Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_031240.1 Length=11541 Score E Sequences producing significant alignments: (Bits) Value seq263735 125 5e-25 seq250369 111 1e-20 seq22788 87.8 1e-13 seq53828 84.2 2e-12 seq42553 80.6 2e-11 >seq263735 Length=2160 Score = 125 bits (138), Expect = 5e-25 Identities = 381/581 (66%), Gaps = 17/581 (3%) Strand=Plus/Plus Query 6461 AAAGAAAGAGAGTTGAAGATAGGAGGAAGATTTTTCGCTTTAATGTCTTGGGAGATTAGA 6520 ||||| | || |||||| | ||| |||||||| | |||||||| |||| | | Sbjct 1234 AAAGAGCGGGAAATGAAGAGAATAGGTAGATTTTTTACCTTAATGTCATGGGCCTTACGT 1293 Query 6521 GATTATTTTGTAATGACAGAATATTTAATTAAAACTCATTTT-GTGCCTCTCTTTGACGG 6579 || |||||||| |||| |||| |||||| |||| | |||| || || | ||||| | Sbjct 1294 GAGTATTTTGTGTTGACCGAATTTTTAATAAAAAAACTTTTTTGTCCCGTTATTTGATAG 1353 Query 6580 ATTAACAATGGCTGATGATCTAACAACTGTTATCGGAAAGATTTTGCGAAACACTGAAGG 6639 | |||| |||||||||||||| || || | ||||| || || |||| || Sbjct 1354 ACTAACCATGGCTGATGATCTCACTGAAGTAACTAAGAAGATGATGAATAATTCTGATGG 1413 Query 6640 ACAAGGA---GAAGATGGATATGAAAGTGTCACCTTCGCAGATCATATAGATTACGAAAA 6696 |||||| |||| ||| | | || | || | || || ||||| ||| Sbjct 1414 TCAAGGATGCCCAGAT---TATTCACGCATCTGTATTGCTAACCACATTGATTATACAAA 1470 Query 6697 ATGGAACAATCATCAGAGAGGAGAGGCAAATAATCCAACTTTCAAAGTTATGGGACAATT 6756 |||||| ||||| |||||| ||| | || || || | ||| ||||| ||||| Sbjct 1471 ATGGAATAATCACCAGAGAAAGGAGTCCAACAAGTATGTATTTAGAGTGATGGGTCAATT 1530 Query 6757 TTTAGGATACCCCAATTTAATTCAGAGAACTCATGAAATATTTGAGAAATCATGGATATA 6816 |||||||||||| | | | || | | ||||||||| | ||||| ||| || || Sbjct 1531 TTTAGGATACCCAAGTCTGATAGAACGGACTCATGAATTTTTTGAAAAAAGCCTTATTTA 1590 Query 6817 TTA--TAATCGAAGGGGAGACTTATTGGGCATCGACGATAATGACAACCTTTTCAATAAA 6874 ||| || | | || ||| ||| | | | || | || | ||| || ||| Sbjct 1591 TTACGTAGCC--CGTCCGGATTTAATGGTCGT--AAGAGACGGA-ACCCTGCAAAACAAA 1645 Query 6875 GGGC---AACACAGAGTTTGTTGGAATGGGCAAGCCGGCGGACTTGAAGGACTCAGGCAA 6931 | |||| | || |||||||| || || || || || || |||||||| || Sbjct 1646 ACCCCAGAACAGATCGTGTGTTGGAAGGGCCAGAAAGGTGGGCTGGAGGGACTCAGACAG 1705 Query 6932 AAAGGGTGGAGTATAGTAAATCTCTTAATTCTTAAACGGGAGAGCAGAACTGTTAATACC 6991 ||||| ||||| || |||||| || ||||| || ||| | || || |||||| Sbjct 1706 AAAGGATGGAGCATTGTAAATTATTTGATTCTAGAAGAAGAGGCCTCAAGAGTAAATACC 1765 Query 6992 GACATTAAGGTCTTAGCGCAAGGAGATAACCAAGTAATTTG 7032 | | || || ||||| ||||||||||| || || ||||| Sbjct 1766 AAAGTAAATGTTTTAGCCCAAGGAGATAATCAGGTTATTTG 1806 >seq250369 Length=726 Score = 111 bits (122), Expect = 1e-20 Identities = 123/164 (75%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 6440 TTAGTGATTGGTTTAAAAGAGAAAGAAAGAGAGTTGAAGATAGGAGGAAGATTTTTCGCT 6499 ||||| ||||| || | || ||||| ||||| |||||| | ||||||||||||||| Sbjct 490 TTAGTCATTGGGTTGAGAGGAAAAGAGGGAGAGATGAAGAGGGTCGGAAGATTTTTCGCT 431 Query 6500 TTAATGTCTTGGGAGATTAGAGATTATTTTGTAATGACAGAATATTTAATTAAAACTCAT 6559 ||||||||||||| || | | || ||||| | ||||| ||| | |||||| || Sbjct 430 CTAATGTCTTGGGATCTTCGGGTGTACTTTGTGCTAACAGAGTATCTCATTAAAGAACAC 371 Query 6560 TTTGTGCCTCTCTTTGACGGATTAACAATGGCTGATGATCTAAC 6603 ||||| || || || | ||||| |||||||| ||||||| || Sbjct 370 TTTGTCCCCCTATTCAAAGGATTGACAATGGCCAATGATCTGAC 327 >seq22788 Length=2006 Score = 87.8 bits (96), Expect = 1e-13 Identities = 188/277 (68%), Gaps = 8/277 (3%) Strand=Plus/Minus Query 6440 TTAGTGATTGGTTTAAAAGAGAAAGAAAGAGAGTTGAAGATAGGA--GGAAGATTTTTCG 6497 || || || || ||| || ||||||| |||| |||||| ||| ||||||| ||||| Sbjct 1810 TTGGTTATCGGACTAAGAGGGAAAGAACGAGAAATGAAGA--GGATCGGAAGATATTTCG 1753 Query 6498 CTTTAATGTCTTGGGAGATTAGAGATTATTTTGTAATGACAGAATATTTAATTAAAACTC 6557 | |||||||| ||| | | | || || ||||| || ||||| ||| | || || | Sbjct 1752 CCTTAATGTCATGGAAACTCCGTGAGTACTTTGTGATCACAGAGTATCTGATCAAGAAGT 1693 Query 6558 ATTTTGTGCCTCTCTTTGACGGATTAACAATGGCTGATGATCTAACAACTGTTATCGGAA 6617 ||| ||| || | || | || ||||||||||||| |||||||| || || || Sbjct 1692 ATTATGTTCCGTTATTCAAGGGGCTAACAATGGCTGACGATCTAACCGAGGTGATGAAAA 1633 Query 6618 AGATTTTGCGAAACA--CTGAAGGACAAGGAGAAGATGGATATGAAAGTGTCACCTTCGC 6675 |||| | ||| || | || || |||||| | | || || ||| | | || Sbjct 1632 AGATGAT--GAACCATTCAGATGGTCAAGGATGTGCAGACTACACCAGAGTCTGCATAGC 1575 Query 6676 AGATCATATAGATTACGAAAAATGGAACAATCATCAG 6712 | |||||||||||| || |||||||| || ||| Sbjct 1574 GAACCATATAGATTACACCAAGTGGAACAACCACCAG 1538 >seq53828 Length=2951 Score = 84.2 bits (92), Expect = 2e-12 Identities = 114/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 6887 GTTTGTTGGAATGGGCAAGCCGGCGGACTTGAAGGACTCAGGCAAAAAGGGTGGAGTATA 6946 ||||| |||||||| || || ||||| |||||| |||| ||||||||||||||||| Sbjct 2560 GTTTGCTGGAATGGACAGAAGGGAGGACTGGAAGGATTCAGACAAAAAGGGTGGAGTATT 2501 Query 6947 GTAAATCTCTTAATTCTTAAACGGGAGAGCAGAACTGTTAATACCGACATTAAGGTCTTA 7006 |||||| |||||| | || | || | | ||||| || | |||| || || Sbjct 2500 GTAAATTACTTAATATTAGAAGAGTAGTCCTCGAAAGTTAACACGAAAGTTAATGTTTTG 2441 Query 7007 GCGCAAGGAGATAACCAAGTAATTTGCTCTCGATACAAA 7045 || || || ||||| ||||| || ||| | | |||||| Sbjct 2440 GCTCAGGGGGATAATCAAGTCATCTGCACCCATTACAAA 2402 >seq42553 Length=2057 Score = 80.6 bits (88), Expect = 2e-11 Identities = 104/144 (72%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 6460 GAAAGAAAGAGAGTTGAAGATAGGAGGAAGATTTTTCGCTTTAATGTCTTGGGAGATTAG 6519 ||| || |||||| |||| | | ||||||||||| ||| | ||||| ||||| || | Sbjct 603 GAAGGAGAGAGAGATGAAAAGGGTTGGAAGATTTTTTGCTCTCATGTCCTGGGATCTTCG 544 Query 6520 AGATTATTTTGTAATGACAGAATATTTAATTAAAACTCATTTTGTGCCTCTCTTTGACGG 6579 ||| || ||||| | ||||| || | || ||| || || || || | || | || Sbjct 543 AGAGTACTTTGTCCTCACAGAGTACCTCATCAAAGAGCACTTCGTCCCCTTGTTCAAAGG 484 Query 6580 ATTAACAATGGCTGATGATCTAAC 6603 |||||||||||| || ||||| || Sbjct 483 ATTAACAATGGCCGACGATCTGAC 460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 36696461025120