Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_031268.1 Length=8683 Score E Sequences producing significant alignments: (Bits) Value seq46121 134 8e-28 seq42553 102 4e-18 seq110009 87.8 1e-13 >seq46121 Length=3043 Score = 134 bits (148), Expect = 8e-28 Identities = 429/652 (66%), Gaps = 34/652 (5%) Strand=Plus/Minus Query 3617 AGACTTTCTCCAAGAAG-TAAATGACCATGGTCTTCCCAAGGATAGTCTCACTATTGGAT 3675 |||||| ||||| || | | |||||| | || ||||| | || ||| || |||| Sbjct 1462 AGACTTCCTCCA-GAGGATTAATGACGAGGGACTTCCTGAAGACTCTCTAGTCATCGGAT 1404 Query 3676 TAAAGGGCAAGGAGCGAGAGTTAAAAGACGTGGGAAGATTTTTCT-CTCTGATGACCTGG 3734 | | | | || ||||| || || || || || | ||||| | |||| |||||||| Sbjct 1403 TGAGGAGAAAAGAGCGGGACTTGAAGCGGGTCGGGCGTTTTTTTTGCTCTCATGACCTG- 1345 Query 3735 GATCTGAGAGAGTATTTTGTATCCACTGAGTACCTCATTAAGATGTATTATGTTCCCTTG 3794 ||||| ||||| || ||||| ||||| || || ||| ||||| || Sbjct 1344 ------AGAGAATATTTCGTCGTTACTGAATACCTAATCAAAGAACATTTCGTTCCACTG 1291 Query 3795 TTTGAAGGACTCACCATGGCAGATGATCTAAAATCTGTAACACGAAAGATACTGGAGTGT 3854 || |||| ||||| ||||| ||||| || | || ||||| ||| | || | | Sbjct 1290 TTCCAAGGCCTCACTATGGCGGATGACCTCACCGAGGTGACACGGAAGGTGTTGAATAAT 1231 Query 3855 ACCACTGGTCACGGT----CAGATCGGTTACAAGGTAGTCAGCTTTGCTAATCACTTAGA 3910 | ||| || || ||||| | |||| | | || ||||||| ||| |||| Sbjct 1230 TCAGATGGGCAAGGATGTCCAGATTATT--CAAG--AATTTGCATTGCTAACCACATAGA 1175 Query 3911 CTATGAGAAATGGAACAATCATCAGAGGAAAAAGTCAACCTTCCCCGTCTTCAAGGTTAT 3970 ||| || ||||||||||| ||||| ||||| | || | | | |||||| | || || Sbjct 1174 CTACGAAAAATGGAACAACCATCAACGGAAAGAATCCAACCAACATGTCTTCCAAGTGAT 1115 Query 3971 GGGTCAGTTCCTTGGGATGCCAAACCTATTCGCTCAAACTCATGATTTCTTCGAACAGAG 4030 ||| ||||||| || ||||| ||| || | |||||||| ||||| ||| |||| Sbjct 1114 GGGCCAGTTCCAAGGATACCCAAATCTAATCACCAGGACTCATGACTTCTTTGAAAAGAG 1055 Query 4031 TTTTGTTTATTATGGTGAACGTCCTGATCTTATGACTGTTCAAGGAGGAAAGATCGTGAA 4090 | | || ||||||| || | || || |||| | | ||| ||| || | | Sbjct 1054 TCTGGTGTATTATGTTGGAATACCAGA-CTTA--ATGCTCCAACGAGATGGGACTTTAAT 998 Query 4091 CAATACAGA---ACATATTGTATGTTGGAACGGTCAACTGGGCGGACTTGAAGGACTACG 4147 ||||| || ||| |||| || |||||||| ||| || | || ||||| || | Sbjct 997 CAATAAGGAAAGACACGTTGTCTGCTGGAACGGCCAATCAGGAGATCTGGAAGGCCTCAG 938 Query 4148 ACAAAAGGGATGGAGCGTCCTCAATCTTCTCGTCATCCTACGAGAGTCGAAG-ATCC--- 4203 ||||||| ||||| || || ||| || | |||||| || || ||| | |||| Sbjct 937 GTAAAAGGGCTGGAGTGTTCTTAATTATC---TAATCCTA-GA-AGACGAGGCATCCAAG 883 Query 4204 -GCAACACCCAAGTCAGAGTGCTTGCTCAAGGTGACAACCAAGTGATTTGCA 4254 || || |||| | || ||||||||||| || | |||||| || |||| Sbjct 882 AAGAATACTAAAGTAAATGTCCTTGCTCAAGGAGATATCCAAGTAATCTGCA 831 >seq42553 Length=2057 Score = 102 bits (112), Expect = 4e-18 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 3680 GGGCAAGGAGCGAGAGTTAAAAGACGTGGGAAGATTTTTCTCTCTGATGACCTGGGATCT 3739 ||| |||||| ||||| | ||| || ||||||||||| |||| ||| |||||||||| Sbjct 606 GGGGAAGGAGAGAGAGATGAAAAGGGTTGGAAGATTTTTTGCTCTCATGTCCTGGGATCT 547 Query 3740 GAGAGAGTATTTTGTATCCACTGAGTACCTCATTAAGATGTATTATGTTCCCTTGTTTGA 3799 ||||||| ||||| ||| ||||||||||| || | | | || |||||||| | Sbjct 546 TCGAGAGTACTTTGTCCTCACAGAGTACCTCATCAAAGAGCACTTCGTCCCCTTGTTCAA 487 Query 3800 AGGACTCACCATGGCAGATGATCT 3823 |||| | || ||||| || ||||| Sbjct 486 AGGATTAACAATGGCCGACGATCT 463 >seq110009 Length=642 Score = 87.8 bits (96), Expect = 1e-13 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 3621 TTTCTCCAAGAAGTAAATGACCATGGTCTTCCCAAGGATAGTCTCACTATTGGATTAAAG 3680 ||| | ||||||||||| ||| ||||||| || | || ||| || ||| | Sbjct 332 TTTTTACAAGAAGTAAACGACAATGGTCTGCCAGATGAGTCTCTTGTAATAGGACTCCGT 391 Query 3681 GGCAAGGAGCGAGAGTTAAAAGACGTGGGAAGATTTTTCTCTCTGATGACCTGGGATCTG 3740 || || ||||| ||| | ||| | |||||||| ||| | || ||| |||||| || Sbjct 392 GGTAAAGAGCGCGAGATGAAAAGGATAGGAAGATTCTTCGCCCTAATGTCCTGGGCCTTG 451 Query 3741 AGAGAGTATTTTGTATCCACTGAGTACCTCATTAAGATGTATTATGTTCCCTTGTTTGAA 3800 |||| |||||||| | || || | | || || | | || |||||| || ||||| Sbjct 452 CGAGAATATTTTGTTTTGACCGAATTATTGATAAAAAACTTTTTTGTTCCTTTATTTGAT 511 Query 3801 GGACTCACCATGGCAGATGATCT 3823 ||||| || ||||| |||||||| Sbjct 512 GGACTAACAATGGCCGATGATCT 534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 27580556148128