Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_031278.1 Length=12247 Score E Sequences producing significant alignments: (Bits) Value seq263735 161 8e-36 seq250369 120 2e-23 seq42553 89.7 4e-14 >seq263735 Length=2160 Score = 161 bits (178), Expect = 8e-36 Identities = 399/592 (67%), Gaps = 15/592 (3%) Strand=Plus/Plus Query 7320 AAAGAAAGAGAAATCAAGATCAATGGCCGATTCTTTTCTCTGATGTCCTGGGATTTACGA 7379 ||||| | ||||| |||| | || |||| ||| | | ||||| |||| ||||| Sbjct 1234 AAAGAGCGGGAAATGAAGAGAATAGGTAGATTTTTTACCTTAATGTCATGGGCCTTACGT 1293 Query 7380 GATTATTTTGTTATAACGGAGTATCTGATTAAAACCCATTTTGTTCCCCTCTTTT-ATGG 7438 || |||||||| | || || | | | || |||| | |||| |||| | ||| || | Sbjct 1294 GAGTATTTTGTGTTGACCGAATTTTTAATAAAAAAACTTTTTTGTCCCGTTATTTGATAG 1353 Query 7439 ACTGACAATGGCTGATGATATGACAACAGT-AGTACGCAAGATGATGGAAAACACCAGTG 7497 ||| || |||||||||||| | || ||| | || | ||||||||| | || | || Sbjct 1354 ACTAACCATGGCTGATGATCTCACTGAAGTAACTAAG-AAGATGATGAATAATTCTGATG 1412 Query 7498 GACAGGGTTCTGATGATTATGAGCACATAGGAATTGCCAATCACTTGGATTATGAAAAGT 7557 | || || | |||||| | ||| | ||||| || ||| | |||||| ||| | Sbjct 1413 GTCAAGGATGCCCAGATTATTCACGCATCTGTATTGCTAACCACATTGATTATACAAAAT 1472 Query 7558 GGAATAATCACCAAAGATACCAATCTACAGAACCTGTATTCACAGTCATGGGCAAATTCC 7617 ||||||||||||| ||| | | || | | |||||| | ||| ||||| |||| Sbjct 1473 GGAATAATCACCAGAGAAAGGAGTCCAACAAGTATGTATTTAGAGTGATGGGTCAATTTT 1532 Query 7618 TCGGATATCCGAATTTAATTGCGAGAACTCATGAGTTCTTCGAGAAAAGCTTCATTTACC 7677 | ||||| || | | | || | | |||||||| || || || |||||| | ||||| Sbjct 1533 TAGGATACCCAAGTCTGATAGAACGGACTCATGAATTTTTTGAAAAAAGCCTTATTTATT 1592 Query 7678 ACGGCGGTAGAGCAGACTTAATGAAGATCTCCAACGGCAACATAGTTAACAAGGATCCCA 7737 ||| | | | || |||||| | |||| | | | ||||| | |||| Sbjct 1593 ACGTAGCCCGTCCGGATTTAATGGTCGTAAGAGACGGAACCCTGCAAAACAA-AACCCCA 1651 Query 7738 GTA-AGATGGTATGCTGGCAGGGCCAGAAGGGCGGATTGGAAGGACTTCGACAAAAGGGG 7796 | | |||| || || ||| |||||||||| || || |||| ||||| |||| || || Sbjct 1652 GAACAGATCGTGTGTTGGAAGGGCCAGAAAGGTGGGCTGGAGGGACTCAGACAGAAAGGA 1711 Query 7797 TGGAGCATATTGAATCTATTAGTCATTC--GAAGGGAAGG--ACAAGACCGGAACACCCG 7852 |||||||| | ||| |||| | |||| |||| ||| ||||| | || || Sbjct 1712 TGGAGCATTGTAAAT-TATT--TGATTCTAGAAGAAGAGGCCTCAAGA--GTAAATACCA 1766 Query 7853 AATCCGATG-CTTAGCTCAAGGAGATAATCAGGTTATCTGTACACAATATAA 7903 || ||| ||||| |||||||||||||||||||| ||||| || ||||| Sbjct 1767 AAGTAAATGTTTTAGCCCAAGGAGATAATCAGGTTATTTGTACTCATTATAA 1818 >seq250369 Length=726 Score = 120 bits (132), Expect = 2e-23 Identities = 269/401 (67%), Gaps = 26/401 (6%) Strand=Plus/Minus Query 7270 TCAACGATGAGGGTCTC---GATATCAACGCCTTGATAATAGGCTTAAGAGAGAAAGAAA 7326 |||| ||||| |||||| ||| || |||| | || || || |||| ||||| Sbjct 519 TCAATGATGAAGGTCTCCCCGATG---ACTCCTTAGTCATTGGGTTGAGAGGAAAAGAGG 463 Query 7327 GAGAAATCAAGATCAATGGCCGATTCTTTTCTCTGATGTCCTGGGATTTACGAGATTATT 7386 |||| || |||| || |||| || |||| ||||| |||||| | || | || | Sbjct 462 GAGAGATGAAGAGGGTCGGAAGATTTTTCGCTCTAATGTCTTGGGATCTTCGGGTGTACT 403 Query 7387 TTGTTATAACGGAGTATCTGATTAAAACCCATTTTGTTCCCCTCTTTTATGGACTGACAA 7446 |||| |||| |||||||| |||||| || ||||| ||||| || | ||| |||||| Sbjct 402 TTGTGCTAACAGAGTATCTCATTAAAGAACACTTTGTCCCCCTATTCAAAGGATTGACAA 343 Query 7447 TGGCTGATGATATGACAACAGTAGTACGCAAGATGATGGAAAAC--ACCAGT--GGACAG 7502 |||| ||||| |||| ||| ||| || || ||| |||| || | || ||| Sbjct 342 TGGCCAATGATCTGACCGAAGT--TAC-CAGGAAAATGAAAAAGTTACTCGGACGGGCAG 286 Query 7503 GGTTCTGATGATTATGAGCACATAGGAATTGCCAATCACTTGGATTATGAAAAGTGGAAT 7562 |||| | ||||| | | || || || ||| || | ||||| ||||||||||| Sbjct 285 GGTTGTCCCGATTACTCGAAGATCTCTATAGCAAATTACATCGATTACAAAAAGTGGAAT 226 Query 7563 AATCACCAAAGATACCAATCTACAGAACCTGTATTCACAGTCATGGGCAAATTCCTCGGA 7622 ||||| ||| | ||| || || || |||||||| ||||| | || Sbjct 225 AATCATCAACG-------------GAAGGAGTCTTTACCGTCATGGGTCAATTCTTGGGC 179 Query 7623 TATCCGAATTTAATTGCGAGAACTCATGAGTTCTTCGAGAA 7663 || || | | ||||| | |||||||||||||| ||||| Sbjct 178 TACCCTACCCTCATTGCCTGCACTCATGAGTTCTTTGAGAA 138 >seq42553 Length=2057 Score = 89.7 bits (98), Expect = 4e-14 Identities = 178/261 (68%), Gaps = 12/261 (5%) Strand=Plus/Minus Query 7311 TTAAGAGAGAAAGAAAGAGAAATCAAGATCAATGGCCGATTCTTTTCTCTGATGTCCTGG 7370 || || | ||| || ||||| || || | ||| |||| ||| |||| ||||||||| Sbjct 611 TTGAGGGGGAAGGAGAGAGAGATGAAAAGGGTTGGAAGATTTTTTGCTCTCATGTCCTGG 552 Query 7371 GATTTACGAGATTATTTTGTTATAACGGAGTATCTGATTAAAACCCATTTTGTTCCCCTC 7430 ||| | ||||| || ||||| | || ||||| || || ||| || || || ||| | Sbjct 551 GATCTTCGAGAGTACTTTGTCCTCACAGAGTACCTCATCAAAGAGCACTTCGTCCCCTTG 492 Query 7431 TTTTATGGACTGACAATGGCTGATGATATGACAACAGTAGTACGCAAGATGATGGAAAAC 7490 || | ||| | |||||||| || ||| |||| || | | ||||||||| | || Sbjct 491 TTCAAAGGATTAACAATGGCCGACGATCTGACTGAGGTTACAAGGAAGATGATGAACAAT 432 Query 7491 ACCAGTGGACAGGGTTCTGATGATTATGAGCACATAGGAATTGCCAATCACTTGGATTAT 7550 | | ||||| ||||| | || | || |||| || || ||| | |||||| Sbjct 431 TCAAACGGACAAGGTTC-AAAGA-TCTG----CATA------GCAAAACACATCGATTAT 384 Query 7551 GAAAAGTGGAATAATCACCAA 7571 ||||||||||||||| ||| Sbjct 383 ACAAAGTGGAATAATCATCAA 363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 38948325560864