Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_031282.1 Length=12651 Score E Sequences producing significant alignments: (Bits) Value seq250369 154 1e-33 seq263735 147 2e-31 seq22788 118 9e-23 seq46121 109 4e-20 seq53828 105 5e-19 seq36779 98.7 8e-17 >seq250369 Length=726 Score = 154 bits (170), Expect = 1e-33 Identities = 256/367 (70%), Gaps = 22/367 (6%) Strand=Plus/Minus Query 7741 TTAATCATTGGATTAA-AGGAGAAAGAGCGAGAAATCAAGAAAGACGGGAGATTCTTCTC 7799 ||| ||||||| || | |||| |||||| |||| || |||| | ||| ||||| ||| | Sbjct 490 TTAGTCATTGGGTTGAGAGGA-AAAGAGGGAGAGATGAAGAGGGTCGGAAGATTTTTCGC 432 Query 7800 TCTTATGTCGTGGCAACTCAGGGATTACTTTGTAATAACCGAATATTTGATCAAGCAACA 7859 ||| ||||| ||| | || ||| |||||||| |||| || ||| | || || |||| Sbjct 431 TCTAATGTCTTGGGATCTTCGGGTGTACTTTGTGCTAACAGAGTATCTCATTAAAGAACA 372 Query 7860 CTTTGTCCCATTATTCGACGGTTTGACTATGGCAGATGATCTCACGACTGTTATCAAGAA 7919 ||||||||| ||||| | || ||||| ||||| ||||||| || |||| || ||| Sbjct 371 CTTTGTCCCCCTATTCAAAGGATTGACAATGGCCAATGATCTGACCGAAGTTACCAGGAA 312 Query 7920 AATGATGGA-CAACGCAAATGGTCAAGGATTAGATACCTATGATT---ATATATCCATAG 7975 ||||| | || | | || || || | | || || | | | || || |||| Sbjct 311 AATGAAAAAGTTACTCGGACGGGCAGGGTT---GTCCCGATTACTCGAAGATCTCTATAG 255 Query 7976 CCAATCATATAGATTATGAAAAGTGGAATAATCATCAGAGGAAAGAATCCACTACCCCAG 8035 | ||| | || ||||| ||||||||||||||||||| |||| | || Sbjct 254 CAAATTACATCGATTACAAAAAGTGGAATAATCATCAACGGAAGG-------------AG 208 Query 8036 TATTTAAGGTAATGGGTCAATTCCTAGGTTACCCTAACCTTATTAGCCGAACTCACGAAT 8095 | |||| || |||||||||||| | || ||||||| ||| ||| | | ||||| || | Sbjct 207 TCTTTACCGTCATGGGTCAATTCTTGGGCTACCCTACCCTCATTGCCTGCACTCATGAGT 148 Query 8096 TCTTCGA 8102 |||| || Sbjct 147 TCTTTGA 141 >seq263735 Length=2160 Score = 147 bits (162), Expect = 2e-31 Identities = 395/595 (66%), Gaps = 28/595 (5%) Strand=Plus/Plus Query 7762 AAAGAGCGAGAAATCAAGAAAGACGGGAGATTCTTCTCTCTTATGTCGTGGCAACTCAGG 7821 |||||||| ||||| |||| | || ||||| || | | ||||| ||| | | Sbjct 1234 AAAGAGCGGGAAATGAAGAGAATAGGTAGATTTTTTACCTTAATGTCATGGGCCTTACGT 1293 Query 7822 GATTACTTTGTAATAACCGAATATTTGATCAAGCAACACTTT-GTCCCATTATTCGACGG 7880 || || ||||| | ||||||| ||| || || ||| ||| ||||| ||||| || | Sbjct 1294 GAGTATTTTGTGTTGACCGAATTTTTAATAAAAAAACTTTTTTGTCCCGTTATTTGATAG 1353 Query 7881 TTTGACTATGGCAGATGATCTCACGACTGTTATCAAGAAAATGATGGACAACGCAAATGG 7940 | || ||||| ||||||||||| || | ||||| |||||| | || | |||| Sbjct 1354 ACTAACCATGGCTGATGATCTCACTGAAGTAACTAAGAAGATGATGAATAATTCTGATGG 1413 Query 7941 TCAAGGATTAGATACCTATGATTAT------ATATCCATAGCCAATCATATAGATTATGA 7994 |||||||| || | |||||| || | || || || || || |||||| Sbjct 1414 TCAAGGATG-----CCCA-GATTATTCACGCATCTGTATTGCTAACCACATTGATTATAC 1467 Query 7995 AAAGTGGAATAATCATCAGAGGAAAGAATCCACTACCCCAGTATTTAAGGTAATGGGTCA 8054 ||| ||||||||||| ||||| || || |||| | ||||||| || |||||||| Sbjct 1468 AAAATGGAATAATCACCAGAGAAAGGAGTCCAACAAGTATGTATTTAGAGTGATGGGTCA 1527 Query 8055 ATTCCTAGGTTACCCTAACCTTATTAGCCGAACTCACGAATTCTTCGAAAGGAGTTTAAT 8114 ||| |||| ||||| | || || || ||||| ||||| || |||| || | || Sbjct 1528 ATTTTTAGGATACCCAAGTCTGATAGAACGGACTCATGAATTTTTTGAAAAAAGCCTTAT 1587 Query 8115 TTACCATGGCGGGAGAACAGACCTAATGAGGATCGTCA---ATGGTGAAGTAGAAAA-TA 8170 ||| | | | | | || |||| | |||| | | || | |||| | Sbjct 1588 TTATTACGTAGCCCGTCCGGATTTAAT---GGTCGTAAGAGACGGAACCCTGCAAAACAA 1644 Query 8171 ATTCGGATATCCGA--GTATGTTGGAATGGACAGAAAGGAGGTCTGGAAGGATTGAGACA 8228 | | | | | || || |||||||| || |||||||| || ||||| ||| | ||||| Sbjct 1645 AACCCCAGAACAGATCGTGTGTTGGAAGGGCCAGAAAGGTGGGCTGGAGGGACTCAGACA 1704 Query 8229 GAAAGGTTGGAGCATTCTAAACCTTCTACTGATTAAAAGAGAAGGGTCATCCAG---AAA 8285 |||||| ||||||||| |||| || | ||||| | ||||| | | || || ||| Sbjct 1705 GAAAGGATGGAGCATTGTAAA--TTAT-TTGATTCTAGAAGAAGAGGCCTCAAGAGTAAA 1761 Query 8286 CACATCTATCAAAACTTTAGCTCAAGGGGATAATCAAGTCATCTGCACCCAGTAT 8340 || | || |||||| ||||| |||||||| || || || || || ||| Sbjct 1762 TACCAAAGTAAATGTTTTAGCCCAAGGAGATAATCAGGTTATTTGTACTCATTAT 1816 >seq22788 Length=2006 Score = 118 bits (130), Expect = 9e-23 Identities = 191/272 (70%), Gaps = 2/272 (1%) Strand=Plus/Minus Query 7747 ATTGGATTAAAGGAGAAAGAGCGAGAAATCAAGAAAGACGGGAGATTCTTCTCTCTTATG 7806 || ||| ||| | |||||| |||||||| |||| ||| |||| ||| | | ||| Sbjct 1804 ATCGGACTAAGAGGGAAAGAACGAGAAATGAAGAGGATCGGAAGATATTTCGCCTTAATG 1745 Query 7807 TCGTGGCAACTCAGGGATTACTTTGTAATAACCGAATATTTGATCAAGCAACACTTTGTC 7866 || ||| ||||| | || |||||||| || || || ||| |||||||| | | | ||| Sbjct 1744 TCATGGAAACTCCGTGAGTACTTTGTGATCACAGAGTATCTGATCAAGAAGTATTATGTT 1685 Query 7867 CCATTATTCGACGGTTTGACTATGGCAGATGATCTCACGACTGTTATCAAGAAAATGATG 7926 || |||||| | || | || ||||| || ||||| || || || || || |||||| Sbjct 1684 CCGTTATTCAAGGGGCTAACAATGGCTGACGATCTAACCGAGGTGATGAAAAAGATGATG 1625 Query 7927 GACAACGCAAATGGTCAAGGATTAGATACCTATGATTATA-TATCCATAGCCAATCATAT 7985 || | || |||||||||||| | ||| | | | | | |||||| || ||||| Sbjct 1624 AACCATTCAGATGGTCAAGGATGTGCAGACTA-CACCAGAGTCTGCATAGCGAACCATAT 1566 Query 7986 AGATTATGAAAAGTGGAATAATCATCAGAGGA 8017 |||||| |||||||| || || ||| ||| Sbjct 1565 AGATTACACCAAGTGGAACAACCACCAGCGGA 1534 >seq46121 Length=3043 Score = 109 bits (120), Expect = 4e-20 Identities = 273/408 (67%), Gaps = 20/408 (5%) Strand=Plus/Minus Query 7742 TAATCATTGGATTAAAGGAGAAA-GAGCGAGAAATCAAGAAAGACGGGAGATTCTTCT-C 7799 || |||| ||||| | ||||||| ||||| || | ||| | |||| | || || | | Sbjct 1415 TAGTCATCGGATTGA-GGAGAAAAGAGCGGGACTTGAAGCGGGTCGGGCGTTTTTTTTGC 1357 Query 7800 TCTTATGTCGTGGCAACTCAGGGATTACTTTGTAATAACCGAATATTTGATCAAGCAACA 7859 ||| ||| | || || || || || || | || ||||| | ||||| |||| Sbjct 1356 TCTCATGACCTG-------AGAGAATATTTCGTCGTTACTGAATACCTAATCAAAGAACA 1304 Query 7860 CTTTGTCCCATTATTCGACGGTTTGACTATGGCAGATGATCTCACGACTGTTATCAAGAA 7919 || || ||| | ||| | || | |||||||| ||||| ||||| || | ||| Sbjct 1303 TTTCGTTCCACTGTTCCAAGGCCTCACTATGGCGGATGACCTCACCGAGGTGACACGGAA 1244 Query 7920 AATGATGGACAACGCAAATGGTCAAGGATTAGATACCTATGATTATATA---TCCATAGC 7976 || || | || || |||| ||||||| | | || ||| | | | ||| || Sbjct 1243 GGTGTTGAATAATTCAGATGGGCAAGGATG---TCCAGATTATTCAAGAATTTGCATTGC 1187 Query 7977 CAATCATATAGATTATGAAAAGTGGAATAATCATCAGAGGAAAGAATCCACTACC--CCA 8034 || || ||||| || ||||| ||||| || ||||| |||||||||||| ||| | Sbjct 1186 TAACCACATAGACTACGAAAAATGGAACAACCATCAACGGAAAGAATCCA--ACCAACAT 1129 Query 8035 GTATTTAAGGTAATGGGTCAATTCCTAGGTTACCCTAACCTTATTAGCCGAACTCACGAA 8094 || || | || ||||| || |||| ||| ||||| || || || | | | ||||| || Sbjct 1128 GTCTTCCAAGTGATGGGCCAGTTCCAAGGATACCCAAATCTAATCACCAGGACTCATGAC 1069 Query 8095 TTCTTCGAAAGGAGTTTAATTTACCATGGCGGGAGAACAGACCTAATG 8142 ||||| |||| |||| | | || ||| || | | ||||| ||||| Sbjct 1068 TTCTTTGAAAAGAGTCTGGTGTATTATGTTGGAATACCAGACTTAATG 1021 >seq53828 Length=2951 Score = 105 bits (116), Expect = 5e-19 Identities = 120/158 (76%), Gaps = 6/158 (4%) Strand=Plus/Minus Query 8185 GTATGTTGGAATGGACAGAAAGGAGGTCTGGAAGGATTGAGACAGAAAGGTTGGAGCATT 8244 || || |||||||||||||| ||||| ||||||||||| ||||| ||||| ||||| ||| Sbjct 2560 GTTTGCTGGAATGGACAGAAGGGAGGACTGGAAGGATTCAGACAAAAAGGGTGGAGTATT 2501 Query 8245 CTAAACCTTCTACTGATTAAAAGAGAAGGGTCATCCAGA---AACACATCTATCAAAACT 8301 |||| | || |||| ||||| | ||| || | | ||||| | || | Sbjct 2500 GTAAA-TTACTTAATATTAGAAGAGTA--GTCCTCGAAAGTTAACACGAAAGTTAATGTT 2444 Query 8302 TTAGCTCAAGGGGATAATCAAGTCATCTGCACCCAGTA 8339 || ||||| |||||||||||||||||||||||||| || Sbjct 2443 TTGGCTCAGGGGGATAATCAAGTCATCTGCACCCATTA 2406 Score = 78.8 bits (86), Expect = 7e-11 Identities = 97/130 (75%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 9176 CATTCCTTTCCGCAATACAACCCGTGTTTCCTCGATTTATTAGTGAATTCAAATCTGCCA 9235 |||| |||| | | || | ||| | |||||| ||||| | |||||||||||||| |||| Sbjct 1569 CATTTCTTTACTCCATCCGTCCCTTATTTCCTAGATTTCTCAGTGAATTCAAATCAGCCA 1510 Query 9236 CTTATCTGGGGATTACTGA-ATCATTAGTAGGCCTGTTCCAAAATTCCAAGACCATACGG 9294 |||| |||| || || || | ||| ||||| || || |||||| | | |||||| || Sbjct 1509 CTTACTTGGGAATCACAGAGAGTATT-GTAGGACTTTTTCAAAATGCGAGGACCATCAGG 1451 Query 9295 AATCTATTCA 9304 || | |||| Sbjct 1450 AACCGCTTCA 1441 >seq36779 Length=13892 Score = 98.7 bits (108), Expect = 8e-17 Identities = 118/159 (74%), Gaps = 1/159 (1%) Strand=Plus/Plus Query 7745 TCATTGGATTAAAGGAGAAAGAGCGAGAAATCAAGAAAGACGGGAGATTCTTCTCTCTTA 7804 |||||||| | | || ||||||| | || || || | || || | || || | |||| Sbjct 5389 TCATTGGACTCAGGGGGAAAGAGAGGGAGATGAAAAGAGCGGGTCGGTTTTTAGCACTTA 5448 Query 7805 TGTCGTGGCAACTCAGGGATTACTTTGTAATAACCGAATATTTGATCAAGCAACACTTTG 7864 |||| ||| | | | || ||||| || || || |||||| | |||||| | ||||||| Sbjct 5449 TGTCCTGGGAGTTGCGAGAATACTTCGTGATTACAGAATATCTTATCAAGGAGCACTTTG 5508 Query 7865 TCCCATTATTCGACGGTTTGACTATGGCAGATGATCTCA 7903 |||||||||| | ||| |||||||||| ||||| |||| Sbjct 5509 TCCCATTATTTAAGGGTCTGACTATGGCCGATGA-CTCA 5546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40236927929760