Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_031301.1 Length=11103 Score E Sequences producing significant alignments: (Bits) Value seq263735 125 5e-25 seq46121 123 2e-24 seq36779 114 9e-22 seq110009 82.4 5e-12 >seq263735 Length=2160 Score = 125 bits (138), Expect = 5e-25 Identities = 398/599 (66%), Gaps = 26/599 (4%) Strand=Plus/Plus Query 6290 GGAAAGGAACGTGAAGTTAAGAAAAAAGGTCGTTTCTTTTCTCTAATGTCATGGATGTTG 6349 || || || || ||| | |||| || |||| | || ||| | ||||||||||| || Sbjct 1231 GGTAAAGAGCGGGAAATGAAGAGAATAGGTAGATTTTTTACCTTAATGTCATGGGCCTTA 1290 Query 6350 CGAGAATATTTTGTGATAACAGAATATTTAATCAAGGAGAA---TTACGTTCCTCTGTTT 6406 || || ||||||||| | || |||| |||||| || | || || || || | ||| Sbjct 1291 CGTGAGTATTTTGTGTTGACCGAATTTTTAATAAA--AAAACTTTTTTGTCCCGTTATTT 1348 Query 6407 AGTGGATTGACAATGGCTGATGATTTGACAACTGTCA-TATCAAAATTGTTAGATAGGAG 6465 | || | || |||||||||||| | || || | || || || | | ||| Sbjct 1349 GATAGACTAACCATGGCTGATGATCTCACTGAAGTAACTAAGAAGATGATGA-ATAATTC 1407 Query 6466 TCAGGGACAAGGTGGTAAAGATTACACTAATATTTGTATCGCAAATCATATTGACTATGA 6525 | | || ||||| | |||||| | || ||||| || || || ||||| ||| Sbjct 1408 TGATGGTCAAGGATGCCCAGATTATTCACGCATCTGTATTGCTAACCACATTGATTATAC 1467 Query 6526 GAAATGGAACAACCATCAAAGAAAAGC-TGCAACTGATCCAGTTTTCAAGGTCATGGGAG 6584 |||||||| || || || ||||| | | |||| | || || | || ||||| Sbjct 1468 AAAATGGAATAATCACCAGAGAAAGGAGTCCAACAAGTAT-GTATTTAGAGTGATGGGTC 1526 Query 6585 AGTTCTTAGGATATCCCAA--CTTATTCACAAGAACTCACGAATTCTTTCAAGAAAGTCT 6642 | || |||||||| ||||| || || | | | ||||| ||||| ||| || |||| || Sbjct 1527 AATTTTTAGGATA-CCCAAGTCTGATAGA-ACGGACTCATGAATTTTTTGAAAAAAGCCT 1584 Query 6643 AATTTACTACAATGGACGACCAGATTTGATGCGTGTCA---ACA-AAGACAGCTTAACAA 6698 ||||| ||| | || || ||||| ||| || | || || | || ||||| Sbjct 1585 TATTTATTACGTAGCCCGTCCGGATTTAATGGTCGTAAGAGACGGAACCCTGCAAAACAA 1644 Query 6699 ATGCAACAAATCAAATAGTATGTTGGGAAGGTCAAGAAGGTGGATTAGAAGGATTGAGAC 6758 | | || | || || || |||||| | || || ||||||| | || ||| | |||| Sbjct 1645 AACCC-CAGAACAGATCGTGTGTTGGAAGGGCCAGAAAGGTGGGCTGGAGGGACTCAGAC 1703 Query 6759 AAAAGGGATGGACAACAGTAGGATTATT-GATGATAAGACGAGAGGCT---AGAGTTCGA 6814 | || ||||||| | ||| |||||| ||| || | |||||| ||||| | Sbjct 1704 AGAAAGGATGGAGCATTGTAA-ATTATTTGATTCTAGAAGAAGAGGCCTCAAGAGT---A 1759 Query 6815 AACACAACGGTCAAAATTTTAGCACAAGGAGATAATCAAGTGATTTGCACTCAATACAA 6873 || || | || || ||||||| |||||||||||||| || ||||| ||||| || || Sbjct 1760 AATACCAAAGTAAATGTTTTAGCCCAAGGAGATAATCAGGTTATTTGTACTCATTATAA 1818 >seq46121 Length=3043 Score = 123 bits (136), Expect = 2e-24 Identities = 228/330 (69%), Gaps = 6/330 (2%) Strand=Plus/Minus Query 6348 TGCGAGAATATTTTGTGATAACAGAATATTTAATCAAGGAGAATTACGTTCCTCTGTTTA 6407 || |||||||||| || | || ||||| ||||||| || ||| |||||| ||||| Sbjct 1346 TGAGAGAATATTTCGTCGTTACTGAATACCTAATCAAAGAACATTTCGTTCCACTGTTCC 1287 Query 6408 GTGGATTGACAATGGCTGATGATTTGACAACTGTCATATCAAAATTGTTAGATAGGAGTC 6467 || | || ||||| ||||| | || || | | || |||| ||| | || Sbjct 1286 AAGGCCTCACTATGGCGGATGACCTCACCGAGGTGACACGGAAGGTGTTGAATA--ATTC 1229 Query 6468 AG--GGACAAGGTGGTAAAGATTACACTAATATTTGTATCGCAAATCATATTGACTATGA 6525 || || ||||| || |||||| | | ||||| || || || || || ||||| || Sbjct 1228 AGATGGGCAAGGATGTCCAGATTATTCAAGAATTTGCATTGCTAACCACATAGACTACGA 1169 Query 6526 GAAATGGAACAACCATCAAAGAAAAG-CTGCAACTGATCCAGTTTTCAAGGTCATGGGAG 6584 |||||||||||||||||| | |||| | |||| | | || ||| | || ||||| Sbjct 1168 AAAATGGAACAACCATCAACGGAAAGAATCCAAC-CAACATGTCTTCCAAGTGATGGGCC 1110 Query 6585 AGTTCTTAGGATATCCCAACTTATTCACAAGAACTCACGAATTCTTTCAAGAAAGTCTAA 6644 ||||| |||||| || || || |||| || ||||| || |||||| || | ||||| Sbjct 1109 AGTTCCAAGGATACCCAAATCTAATCACCAGGACTCATGACTTCTTTGAAAAGAGTCTGG 1050 Query 6645 TTTACTACAATGGACGACCAGATTTGATGC 6674 | || || |||| |||||| || |||| Sbjct 1049 TGTATTATGTTGGAATACCAGACTTAATGC 1020 >seq36779 Length=13892 Score = 114 bits (126), Expect = 9e-22 Identities = 238/358 (66%), Gaps = 36/358 (10%) Strand=Plus/Plus Query 6317 GGTCGTTTCTTTTCTCTAATGTCATGGATGTTGCGAGAATATTTTGTGATAACAGAATAT 6376 ||||| || || | || ||||| ||| |||||||||||| || ||||| ||||||||| Sbjct 5430 GGTCGGTTTTTAGCACTTATGTCCTGGGAGTTGCGAGAATACTTCGTGATTACAGAATAT 5489 Query 6377 TTAATCAAGGAGAATTACGTTCCTCTGTTTAGTGGATTGACAATGGCTGATGATTTGACA 6436 | ||||||||| | | || || | |||| || |||| ||||| ||||| | | | Sbjct 5490 CTTATCAAGGAGCACTTTGTCCCATTATTTAAGGGTCTGACTATGGCCGATGACTCAATA 5549 Query 6437 ACTGTCATATCAAAATTGTTAGATAGGAGTCAGGGACAAGGTGGTAAAGATTACACTAAT 6496 ||| || |||||||| || ||| || ||||| Sbjct 5550 ACTCCGAT-------------------------GGACAAGGGTGTCCAGACTATACTAAA 5584 Query 6497 ATTTGTATCGCAAATCATATTGACTATGAGAAATGGAACAACCATCAAAGAAAAGCTGCA 6556 || ||| | || |||||||| |||||||| ||||||||||||||| | || || Sbjct 5585 ATCTGTGTAGCGAATCATATCGACTATGAAAAATGGAACAACCAT--------AACTCCA 5636 Query 6557 ACTGATCCAGTTTTCAAGGTCATGGGAGAGTTCTTAGGATATCC-CAACTTATTCACAAG 6615 | | | || ||| |||||||| |||| || || || || || || ||| | | | Sbjct 5637 A-TCAATATGTATTCCGTGTCATGGGCCAGTTTTTGGGTTACCCTCATCTAATTGA-ACG 5694 Query 6616 AACTCACGAATTCTTTCAAGAAAGTCTAATTTACTACAATGGACGACCAGATTTGATG 6673 || || ||||||||| | ||||| ||||||| ||| || || || ||| ||||| Sbjct 5695 GACCCATGAATTCTTTGAGAAAAGTTTAATTTATTACGTCGGTCGTCCCGATCTGATG 5752 >seq110009 Length=642 Score = 82.4 bits (90), Expect = 5e-12 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 6028 AGATAAATGGAATGAGTTGCCTTTAACAAAATGTTTTGATATCCCTGATATAATTGATCC 6087 |||||| ||| || |||||| |||| ||||||||||| || ||||| | |||||| Sbjct 127 AGATAACTGGCATTTGTTGCCCTTAATGAAATGTTTTGAAATTCCTGACACTGTTGATCA 186 Query 6088 CAGTTTACTTTATTCAGATAAGAGTCACTCTATGAATA 6125 ||| | |||| |||||||||||||||||| | |||| Sbjct 187 AAGTCAAATTTACTCAGATAAGAGTCACTCTGTAAATA 224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35299411922208