Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_031302.1 Length=11370 Score E Sequences producing significant alignments: (Bits) Value seq263735 145 6e-31 seq110009 100 2e-17 >seq263735 Length=2160 Score = 145 bits (160), Expect = 6e-31 Identities = 391/584 (67%), Gaps = 23/584 (4%) Strand=Plus/Plus Query 6441 AAGGAGCGCGAACTGAAAATTGGAGGCAGATTCTTTGCCTTGATGTCCTGGGAAATAAGG 6500 || ||||| ||| |||| | ||| ||||| ||| |||| ||||| |||| || | Sbjct 1234 AAAGAGCGGGAAATGAAGAGAATAGGTAGATTTTTTACCTTAATGTCATGGGCCTTACGT 1293 Query 6501 GATTATTTTGTAATGACTGAGTACTTGATTAAAACACACTTT-GTTCCTCTATTTGATGG 6559 || |||||||| |||| || | || || |||| || ||| || || |||||||| | Sbjct 1294 GAGTATTTTGTGTTGACCGAATTTTTAATAAAAAAACTTTTTTGTCCCGTTATTTGATAG 1353 Query 6560 ACTCACAATGGCAGATGACTTAACAACGGTAATCGGGAAAATTCTTCGAAACACGGAAGG 6619 ||| || ||||| ||||| | || |||| ||| || | || | || || Sbjct 1354 ACTAACCATGGCTGATGATCTCACTGAAGTAACTAAGAAGATGATGAATAATTCTGATGG 1413 Query 6620 ACAAGGAGATACATCCTATGAAA--ATGTGACTTTTGCTGATCATATTGATTATGAAAAA 6677 |||||| || ||| | || || | ||||| | || ||||||||| |||| Sbjct 1414 TCAAGGATGCCCAGATTATTCACGCATCTG--TATTGCTAACCACATTGATTATACAAAA 1471 Query 6678 TGGAATAATCACCAAAGAGCAGAGGGAAACAACCCTACCTTCAGGGTTATGGGTCAATTT 6737 |||||||||||||| ||| ||| ||||| | || || || |||||||||||| Sbjct 1472 TGGAATAATCACCAGAGAAAGGAGTCCAACAAGTATGTATTTAGAGTGATGGGTCAATTT 1531 Query 6738 TTAGGGTACCCAAATTTGATTGAAAGAACACATGAAATCTTTGAAAAA--TCTTGGATAT 6795 ||||| ||||||| | |||| ||| | || |||||| | ||||||||| ||| || | Sbjct 1532 TTAGGATACCCAAGTCTGATAGAACGGACTCATGAATTTTTTGAAAAAAGCCTT--ATTT 1589 Query 6796 ACTA--TAATCGAAGAGGAGATTTGATTGGGGTAGACGACAATGATAAGCTGTACAACAA 6853 | || || | | ||||| || | ||| ||| | | ||| | ||||| Sbjct 1590 ATTACGTAGCC--CGTCCGGATTTAATGGTCGTAAGAGAC---GGAACCCTGCAAAACAA 1644 Query 6854 AGGGCCA-CACAGA--GTTTGTTGGAATGGACAAAGAGGAGGACTGGAAGGTCTTCGTCA 6910 | ||| ||||| || |||||||| || || | ||| || ||||| || || | || Sbjct 1645 AACCCCAGAACAGATCGTGTGTTGGAAGGGCCAGAAAGGTGGGCTGGAGGGACTCAGACA 1704 Query 6911 AAAAGGGTGGAGCATTGTGAACCTCCTTATTCTA-AAGAGGGAAAGCCT-GGCAGTCAAT 6968 ||||| ||||||||||| || | |||||| |||| | | |||| ||| ||| Sbjct 1705 GAAAGGATGGAGCATTGTAAATTATTTGATTCTAGAAGAAG--AGGCCTCAAGAGTAAAT 1762 Query 6969 ACAGACATCAAGGTACTAGCCCAAGGTGACAACCAAGTCATCTG 7012 || | | || || |||||||||| || || || || || || Sbjct 1763 ACCAAAGTAAATGTTTTAGCCCAAGGAGATAATCAGGTTATTTG 1806 >seq110009 Length=642 Score = 100 bits (110), Expect = 2e-17 Identities = 108/142 (76%), Gaps = 1/142 (1%) Strand=Plus/Plus Query 6441 AAGGAGCGCGAACTGAAAATTGGAGGCAGATTCTTTGCCTTGATGTCCTGGGAAATAAGG 6500 || |||||||| |||||| ||| |||||||| ||| | |||||||||| | | Sbjct 395 AAAGAGCGCGAGATGAAAAGGATAGGAAGATTCTTCGCCCTAATGTCCTGGGCCTTGCGA 454 Query 6501 GATTATTTTGTAATGACTGAGTACTTGATTAAAACACACTTTGTTCCTCTATTTGATGGA 6560 || |||||||| |||| || | ||||| |||| ||||||||| ||||||||||| Sbjct 455 GAATATTTTGTTTTGACCGAATTATTGATAAAAAACTTTTTTGTTCCTTTATTTGATGGA 514 Query 6561 CTCACAATGGCAGATGA-CTTA 6581 || |||||||| ||||| |||| Sbjct 515 CTAACAATGGCCGATGATCTTA 536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 36151037745216