Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_031304.1 Length=10306 Score E Sequences producing significant alignments: (Bits) Value seq263735 107 1e-19 seq46121 102 5e-18 >seq263735 Length=2160 Score = 107 bits (118), Expect = 1e-19 Identities = 306/458 (67%), Gaps = 23/458 (5%) Strand=Plus/Plus Query 5256 AATTTCTAAAGCTGGTCAATGACCGTGGGCTCCCTCGA-GCCTGTCTCGCTATCGGGCTG 5314 ||||| | || ||| |||||| ||| || || ||| | | ||| | ||| || || Sbjct 1169 AATTTTTGCAGGAGGTTAATGACAATGGCCTGCC-CGATGAGTCTCTAGTTATAGGACTC 1227 Query 5315 AAAGGGAAAGAAAGAGAACTAAAGGAAATAGGAAGGTTCTTTTCTTTAATGACATGGGCT 5374 ||| ||||| | ||| | ||| |||||| || || ||| | |||||| ||||||| Sbjct 1228 CGAGGTAAAGAGCGGGAAATGAAGAGAATAGGTAGATTTTTTACCTTAATGTCATGGGCC 1287 Query 5375 CTAAGGGAATATTTCGTCTCTACTGAGTATTTGATCAAAA--CTTACTTCGTTCCATTAT 5432 || | || ||||| || | || || | ||| || |||| ||| || || || |||| Sbjct 1288 TTACGTGAGTATTTTGTGTTGACCGAATTTTTAATAAAAAAACTTTTTT-GTCCCGTTAT 1346 Query 5433 TTGAGGGACTCACTATGGCTGATGATCTGAAAGGAGTGACTCGCAAGATTCTCGACTGCT 5492 |||| |||| || |||||||||||||| | | ||| ||| ||||| | | | Sbjct 1347 TTGATAGACTAACCATGGCTGATGATCTCACTGAAGTAACTAAGAAGATGATGAATAATT 1406 Query 5493 CCGCTGGCCAGGG-------GAATAAAAACAGCTGCGATGTAGGGTTCGCCAATCATCTA 5545 | | ||| || || || || || || | |||| | || || || | Sbjct 1407 CTGATGGTCAAGGATGCCCAGATTATTCAC-GCATC--TGTA----TTGCTAACCACATT 1459 Query 5546 GACTACGAGAAATGGAACAACCATCAACGGAAGGAAT-CAACTTCTCCTGTTTTTACCGT 5604 || || |||||||| || || || | ||||| | |||| | ||| |||| || Sbjct 1460 GATTATACAAAATGGAATAATCACCAGAGAAAGGAGTCCAACAAGT-ATGTATTTAGAGT 1518 Query 5605 CATGGGGCAATTCCTAGGGCTTCCCAAAT-TAATAGCTAGGACACACGAATTTTTTGAAC 5663 ||||| ||||| || || | ||||| | | |||| |||| || |||||||||||| Sbjct 1519 GATGGGTCAATTTTTA-GGATACCCAAGTCTGATAGAACGGACTCATGAATTTTTTGAAA 1577 Query 5664 AAAGTTTTATTTACTACGGAGATCGTCCCGATTTGATG 5701 |||| ||||||| |||| || ||||| ||||| ||| Sbjct 1578 AAAGCCTTATTTATTACGTAGCCCGTCCGGATTTAATG 1615 >seq46121 Length=3043 Score = 102 bits (112), Expect = 5e-18 Identities = 349/530 (66%), Gaps = 23/530 (4%) Strand=Plus/Minus Query 5375 CTAAGGGAATATTTCGTCTCTACTGAGTATTTGATCAAAACTTACTTCGTTCCATTATTT 5434 || || |||||||||||| |||||| || | |||||| | ||||||||| | || Sbjct 1347 CTGAGAGAATATTTCGTCGTTACTGAATACCTAATCAAAGAACATTTCGTTCCACTGTTC 1288 Query 5435 GAGGGACTCACTATGGCTGATGATCTGAAAGGAGTGACTCGCAAGATTCTCGACTGCTCC 5494 | || ||||||||||| ||||| || | | ||||| || ||| | | | || Sbjct 1287 CAAGGCCTCACTATGGCGGATGACCTCACCGAGGTGACACGGAAGGTGTTGAATAATTCA 1228 Query 5495 GCTGGCCAGGGGAATAAAAACAGCTGC-GATGTAGGGTTCGCCAATCATCTAGACTACGA 5553 | ||| || || | | | | || | | || || || || |||||||||| Sbjct 1227 GATGGGCAAGGATGTCCAGATTATTCAAGAATTTGCATT-GCTAACCACATAGACTACGA 1169 Query 5554 GAAATGGAACAACCATCAACGGAAGGAATCAACTTCTCCTGTTTTTACCGTCATGGGGCA 5613 ||||||||||||||||||||||| ||||| | | ||| || || ||||| || Sbjct 1168 AAAATGGAACAACCATCAACGGAAAGAATCCAACCAACATGTCTTCCAAGTGATGGGCCA 1109 Query 5614 ATTCCTAGGGCTTCCCAAAT-TAATAGCTAGGACACACGAATTTTTTGAACAAAGTTTTA 5672 |||| | || | ||||||| |||| | ||||| || || || |||||| | ||| | Sbjct 1108 GTTCC-AAGGATACCCAAATCTAATCACCAGGACTCATGACTTCTTTGAAAAGAGTCTGG 1050 Query 5673 TTTACTACGGAGATCGTCCCGATTTGATG-ACCATCAAGGATGGAGAAATT-GTCAACGT 5730 | || || | | || || || ||| ||| | | ||||| || || |||| Sbjct 1049 TGTATTATGTTGGAATACCAGACTTAATGCTCCAACGA-GATGG-GACTTTAATCAA--- 995 Query 5731 CGATGAAAACCAGAAAGTCTGCTGGAATGGTCAATTGGGGGGACTGGAAGGGCTTCGACA 5790 | |||| || ||||||||||| || |||| || | |||||||| || | | Sbjct 994 TAAGGAAAGACACGTTGTCTGCTGGAACGGCCAATCAGGAGATCTGGAAGGCCTCAGGTA 935 Query 5791 AAAAGGATGGAGCGTACTTAATCTTCTTGTGATCTT--AAGA----GAATCTAAAATTCG 5844 ||| || ||||| || |||||| || | ||| | |||| | ||| || | Sbjct 934 AAAGGGCTGGAGTGTTCTTAATTATC---TAATCCTAGAAGACGAGGCATCCAAGA---A 881 Query 5845 AAACACGAAGGTCAGAGTCCTTGCTCAAGGGGACAATCAAGTGATCTGCA 5894 || || || || | |||||||||||||| || | ||||| ||||||| Sbjct 880 GAATACTAAAGTAAATGTCCTTGCTCAAGGAGATATCCAAGTAATCTGCA 831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 32757292892480