Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_031305.1 Length=10833 Score E Sequences producing significant alignments: (Bits) Value seq46121 140 2e-29 seq36779 111 1e-20 seq22788 93.3 3e-15 seq263735 87.8 1e-13 >seq46121 Length=3043 Score = 140 bits (154), Expect = 2e-29 Identities = 289/426 (68%), Gaps = 8/426 (2%) Strand=Plus/Minus Query 5931 CTGCCACAAACTGGCCAGAGTTTCTTCAAAGAGTGAATGATGACGGGATACCTAGAGATC 5990 |||||||| |||| ||| || || || || | ||||| || || | ||| ||| Sbjct 1478 CTGCCACAGTCTGGAAAGACTTCCTCCAGAGGATTAATGACGAGGGACTTCCTGAAGACT 1419 Query 5991 AGCTGGTTATCGGACTGAAAGGGAAGGAACGGGAGTTGAAGAAAAACGGGCGCTTCTTCT 6050 || || |||||| ||| | || || ||||| |||||| |||||| || || Sbjct 1418 CTCTAGTCATCGGATTGAGGAGAAAAGAGCGGGACTTGAAGCGGGTCGGGCGTTTTTT-- 1361 Query 6051 CATTGATGTCATGGATGTTGCGAGAATATTTCGTGGTCACTGAGTACCTTATCAAGCTTC 6110 ||| | ||||| || ||||||||||||| || ||||| ||||| ||||| | Sbjct 1360 --TTGCTCTCATGACC--TGAGAGAATATTTCGTCGTTACTGAATACCTAATCAAAGAAC 1305 Query 6111 ACTATGTTCCCCTTTTCTCAGGCCTGACTATGGCGGATGATCTAACCACAGTCATCAC-C 6169 | | ||||| || ||| |||||| |||||||||||||| || ||| || | ||| Sbjct 1304 ATTTCGTTCCACTGTTCCAAGGCCTCACTATGGCGGATGACCTCACCGAGGTGA-CACGG 1246 Query 6170 AAATTATTGGACCGGACCCAAGGACAGGGAGGTACATCGTATGAAAATATCTGCATCGCC 6229 || | ||| | | | || || ||| || || ||| || || ||||| || Sbjct 1245 AAGGTGTTGAATAATTCAGATGGGCAAGGATGTCCAGATTATTCAAGAATTTGCATTGCT 1186 Query 6230 AATCACATTGATTATGAGAAATGGAACAATCATCAACGTCAGGAGGCCACTGCGCCAGTG 6289 || ||||| || || || ||||||||||| |||||||| | || ||| | || Sbjct 1185 AACCACATAGACTACGAAAAATGGAACAACCATCAACGGAAAGAATCCAACCAACATGTC 1126 Query 6290 TTCAGGGTGATGGGACAATTCCTTGGATATCCAAACCTCATTGCGAGGACCCATGAGTTC 6349 ||| |||||||| || |||| ||||| ||||| || || | ||||| ||||| ||| Sbjct 1125 TTCCAAGTGATGGGCCAGTTCCAAGGATACCCAAATCTAATCACCAGGACTCATGACTTC 1066 Query 6350 TTTCAA 6355 ||| || Sbjct 1065 TTTGAA 1060 >seq36779 Length=13892 Score = 111 bits (122), Expect = 1e-20 Identities = 429/665 (65%), Gaps = 68/665 (10%) Strand=Plus/Plus Query 5947 AGAGTTTCTTCAAAGAGTGAATGATGACGGGATA-CCTAGAGATCAGCTGGTTATCGGAC 6005 |||||| | ||| |||| ||||| | ||| | || || || || || || |||| Sbjct 5339 AGAGTTCATGCAACGAGTCAATGACCATGGGTTGTCCCAGGACTCT-CTTGTCATTGGAC 5397 Query 6006 TGAAAGGGAAGGAACGGGAGTTGAAGAAAAACGGG-CGCTTCTTCTCATTGATGTCATGG 6064 | | ||||| || ||||| |||| || | |||| || || || || | ||||| ||| Sbjct 5398 TCAGGGGGAAAGAGAGGGAGATGAA-AAGAGCGGGTCGGTTTTTAGCACTTATGTCCTGG 5456 Query 6065 ATGTTGCGAGAATATTTCGTGGTCACTGAGTACCTTATCAAGCTTCACTATGTTCCCCTT 6124 |||||||||||| |||||| | || || || ||||||||| |||| || |||| || Sbjct 5457 GAGTTGCGAGAATACTTCGTGATTACAGAATATCTTATCAAGGAGCACTTTG-TCCCATT 5515 Query 6125 TTCTCA-GGCCTGACTATGGCGGATGATCTAACCACAGTCATCACCAAATTATTGGACCG 6183 | | | || ||||||||||| ||||| || | || || Sbjct 5516 ATTTAAGGGTCTGACTATGGCCGATGA-CTCA--------ATAAC--------------- 5551 Query 6184 GACCCAAGGACAGGGAGGTACATCGTATGAAAATATCTGCATCGCCAATCACATTGATTA 6243 || | ||||| || || || ||| || ||||| | || ||||| || || || Sbjct 5552 -TCCGATGGACAAGGGTGTCCAGACTATACTAAAATCTGTGTAGCGAATCATATCGACTA 5610 Query 6244 TGAGAAATGGAACAATCATCAACGTCAGGAGGCCACTGCGCCAGTGTTCAGGGTGATGGG 6303 ||| ||||||||||| ||| ||| ||| | || ||| | || ||||| Sbjct 5611 TGAAAAATGGAACAACCAT-AAC--------TCCAATCAATATGTATTCCGTGTCATGGG 5661 Query 6304 ACAATTCCTTGGATATCCAAACCTCATTGCGAGGACCCATGAGTTCTTTCAACAAAGCTT 6363 || || | || || || | || |||| |||||||||| |||||| | |||| || Sbjct 5662 CCAGTTTTTGGGTTACCCTCATCTAATTGAACGGACCCATGAATTCTTTGAGAAAAGTTT 5721 Query 6364 AATATACTACAATGGTAGGCCCGATCTCATGATTGTGTCCAAGGATTCTCTTAAGTCCCG 6423 ||| || ||| ||| | |||||||| |||| ||||| || ||| | | Sbjct 5722 AATTTATTACGTCGGTCGTCCCGATCTGATGA-----TCCAAAGA------GAAGACACC 5770 Query 6424 TGGC----CAACATT-------TGGTTTGTTGGGAGGGCCAGGCAGGCGGACTGGAAGGT 6472 | | ||| ||| | ||||| ||| | || ||||| || || ||||| || Sbjct 5771 TTCCTCAACAAGATTGGAGAGATTGTTTGCTGGAACGGACAGGCTGGTGGTCTGGAGGGG 5830 Query 6473 TTGCGACAAAAAGGATGGAGTGTCCTTAGCCTATTGGTTATTC-AGAGG--GAGTCCAAA 6529 | | || || |||||||| || || | ||| | |||| || | ||||| | Sbjct 5831 CTCTGCCAGAAGGGATGGAGCGTTCTGA-ATTAT--CTCATTCTGGATGATGAGTCAGAG 5887 Query 6530 ATAAGAAATACCAAGGTCAAGACGCTGGCGCAAGGTGACAACCAAGTCATTTGTACTCAG 6589 | | ||||||||| || || ||||| ||||| || || || ||||||||||| || Sbjct 5888 AAGAAAAATACCAATGTGAACGTCCTGGCCCAAGGAGATAATCAGGTCATTTGTACCCAC 5947 Query 6590 TACAA 6594 ||||| Sbjct 5948 TACAA 5952 >seq22788 Length=2006 Score = 93.3 bits (102), Expect = 3e-15 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 5994 TGGTTATCGGACTGAAAGGGAAGGAACGGGAGTTGAAGAAAAACGGGCGCTTCTTCTCAT 6053 ||||||||||||| | |||||| ||||| || |||||| | ||| | | ||| | | Sbjct 1809 TGGTTATCGGACTAAGAGGGAAAGAACGAGAAATGAAGAGGATCGGAAGATATTTCGCCT 1750 Query 6054 TGATGTCATGGATGTTGCGAGAATATTTCGTGGTCACTGAGTACCTTATCAAGCTTCACT 6113 | |||||||||| | || || || || ||| |||| ||||| || |||||| | | Sbjct 1749 TAATGTCATGGAAACTCCGTGAGTACTTTGTGATCACAGAGTATCTGATCAAGAAGTATT 1690 Query 6114 ATGTTCCCCTTTTCTCAGGCCTGACTATGGCGGATGATCTAACC 6157 ||||||| | ||| || || || ||||| || ||||||||| Sbjct 1689 ATGTTCCGTTATTCAAGGGGCTAACAATGGCTGACGATCTAACC 1646 >seq263735 Length=2160 Score = 87.8 bits (96), Expect = 1e-13 Identities = 364/562 (65%), Gaps = 37/562 (7%) Strand=Plus/Plus Query 6218 ATCTGCATCGCCAATCACATTGATTATGAGAAATGGAACAATCATCAACGTCAGGAGGCC 6277 ||||| || || || |||||||||||| |||||||| ||||| || | ||||| || Sbjct 1439 ATCTGTATTGCTAACCACATTGATTATACAAAATGGAATAATCACCAGAGAAAGGAGTCC 1498 Query 6278 ACTGCGCCAGTGTTCAGGGTGATGGGACAATTCCTTGGATATCCAAACCTCATTGCGAGG 6337 | | || || || |||||||| ||||| | ||||| |||| || || | || Sbjct 1499 AACAAGTATGTATTTAGAGTGATGGGTCAATTTTTAGGATACCCAAGTCTGATAGAACGG 1558 Query 6338 ACCCATGAGTTCTTTCAACAAAGCTTAATATACTACAATGGTAGGCCCGATCTCATGATT 6397 || ||||| || ||| || ||||| | || || ||| | | || ||| | ||| | Sbjct 1559 ACTCATGAATTTTTTGAAAAAAGCCTTATTTATTACGTAGCCCGTCCGGATTTAATGGTC 1618 Query 6398 GTGTCCAAGGATTCTCT------TAAGTCCCGTGGCCAACATTTGGTTTGTTGGGAGGGC 6451 || | | | || || ||| | |||| | || |||||| ||||| Sbjct 1619 GTAAGAGACGGAACCCTGCAAAACAAAACCCCAG---AACAGATCGTGTGTTGGAAGGGC 1675 Query 6452 CAGGCAGGCGGACTGGAAGGTTTGCGACAAAAAGGATGGAGTGTCCTTAGCCTATTGGTT 6511 ||| ||| || ||||| || | |||| ||||||||||| | || |||| | Sbjct 1676 CAGAAAGGTGGGCTGGAGGGACTCAGACAGAAAGGATGGAGCAT-TGTAAATTATT--TG 1732 Query 6512 ATTC-AGAGG--GAGTCCAAAATAAGAAATACCAAGGTCAAGACGCTGGCGCAAGGTGAC 6568 |||| ||| | ||| || || | ||||||||| || || | || ||||| || Sbjct 1733 ATTCTAGAAGAAGAGGCCTCAAGAGTAAATACCAAAGTAAATGTTTTAGCCCAAGGAGAT 1792 Query 6569 AACCAAGTCATTTGTACTCAGTACAAGCTGAGGCCCTCTGGATGCGCCGGAGACCTT--- 6625 || || || ||||||||||| || || ||||| | ||| | ||| | | Sbjct 1793 AATCAGGTTATTTGTACTCATTATAA---GAGGC---AACAAGGCGACCAAGATCGTAGC 1846 Query 6626 TTACAAAACA-------TCAATGATGTAGTCAAAAATAACAATATCATCATGTCGGCAGT 6678 ||| || || ||||| || | | ||||||||| ||||| | ||| || | Sbjct 1847 TTA-AACCCACGGTTGGTCAAT-ATTTGG--AAAAATAACGATATCCTGATGAAAGCGAT 1902 Query 6679 CAAGGCAGGAACCA-AGAAACTCGGCCTTATAATTAATGAAGATGAGACAATGCAGTCAG 6737 | || || || | ||| | || |||||||| || ||||| ||||||||||| | || Sbjct 1903 C-AGAAGGGCTGCAGATAAAATAGGACTTATAATAAACGAAGACGAGACAATGCAATAAG 1961 Query 6738 CAGATTATTTGAATTACGGAAA 6759 || || ||| ||||| || || Sbjct 1962 CAACTTTTTTAAATTATGGGAA 1983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 34438217269728