Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_031690.1 Length=11308 Score E Sequences producing significant alignments: (Bits) Value seq263735 185 6e-43 seq46121 116 3e-22 >seq263735 Length=2160 Score = 185 bits (204), Expect = 6e-43 Identities = 313/450 (70%), Gaps = 9/450 (2%) Strand=Plus/Minus Query 4492 GTAATATATCAGTGATTTTTCAAAGAATTCATGAGTTCGAGATATTAGTTTTGGATACCC 4551 |||||| || || ||||||||| ||||||||||| || ||| || |||| || || Sbjct 1594 GTAATAAATAAGGCTTTTTTCAAAAAATTCATGAGTCCGTTCTATCAGACTTGGGTATCC 1535 Query 4552 AAGAAACTTTCCCATCACATCAAATACAGGATTATTGG----CTTTGGCTCGTTGATGGT 4607 | ||| | |||||||| ||||||| || |||| |||| ||| || || | Sbjct 1534 TAAAAATTGACCCATCACTCTAAATACATACTTGTTGGACTCCTTT--CTC--TGGTGAT 1479 Query 4608 TATTCCATTTGCTATAATCAAAGTGATTGGCGATACAGATGTTCTCGTACCCTTCACTTC 4667 |||||||||| ||||||||| ||| || || ||||||||| || || | || Sbjct 1478 TATTCCATTTTGTATAATCAATGTGGTTAGCAATACAGATGCGTGAATAATCTGGGCATC 1419 Query 4668 CTTGACCTGAAGTTGTATCCATCATTTTCTTTATGACGGTAGTCATATCATCTGCCATAG 4727 ||||||| || ||| |||||| ||||| | || ||| | |||||| ||||| | Sbjct 1418 CTTGACCATCAGAATTATTCATCATCTTCTTAGTTACTTCAGTGAGATCATCAGCCATGG 1359 Query 4728 TTAGTCCTTTAAACAATGGAAC-AAAGTGAGTCTTGATTAGGTGTTCTGTTATTACAAAA 4786 |||||| | ||| || || || ||| | | || |||| ||| || | |||||| Sbjct 1358 TTAGTCTATCAAATAACGGGACAAAAAAGTTTTTTTATTAAAAATTCGGTCAACACAAAA 1299 Query 4787 TACTCTCGTAAAGCCCAGGTCAATAGAGCATAAAATCTTCCTCCAATCTTGATCTCTCGC 4846 ||||| ||||| ||||| | || || | | ||||||| ||| |||| || || ||| Sbjct 1298 TACTCACGTAAGGCCCATGACATTAAGGTAAAAAATCTACCTATTCTCTTCATTTCCCGC 1239 Query 4847 TCTTTTCCTTTAAGTCCTATGATGAGATCCTCAAGAGTTAGTCCATTGTCATTGACTTCT 4906 ||||| ||| |||||||| | ||| |||| | || ||||||||||| || || Sbjct 1238 TCTTTACCTCGGAGTCCTATAACTAGAGACTCATCGGGCAGGCCATTGTCATTAACCTCC 1179 Query 4907 TGCAGGAACTTTTTCCACTCCGTTGCAGGT 4936 |||| || | |||||| | || |||||| Sbjct 1178 TGCAAAAATTGTTTCCAATTTGTAGCAGGT 1149 >seq46121 Length=3043 Score = 116 bits (128), Expect = 3e-22 Identities = 295/441 (67%), Gaps = 26/441 (6%) Strand=Plus/Plus Query 4508 TTTTCAAAGAATTCATGAGTTCGAGATATTAGTTTTGGATACCCAAGAAACTTTCCCATC 4567 ||||||||||| |||||||| | | ||||| ||||| || || | |||| |||||| Sbjct 1058 TTTTCAAAGAAGTCATGAGTCCTGGTGATTAGATTTGGGTATCCTTGGAACTGGCCCATC 1117 Query 4568 ACATCAAATACAGGATTATTGGCTTTGGCTCGTTGATGGTTATTCCATTTGCTATAATCA 4627 || | || ||| | | |||| || ||||||||||| |||||||| || || Sbjct 1118 ACTTGGAAGACATGTTGGTTGGATTCTTTCCGTTGATGGTTGTTCCATTTTTCGTAGTCT 1177 Query 4628 AAGTGATTGGCGATACAGATGTTCTCG--TACCCTTCACTTCCTTG---ACCTGAAGTTG 4682 | ||| || || || || | |||| | || || || |||||| | ||||| Sbjct 1178 ATGTGGTTAGCAATGCAAA--TTCTTGAATAATCTGGACATCCTTGCCCATCTGAA---T 1232 Query 4683 TATCCATCATTTTCTTTATGACGGTAGTCATATCATCTGCCATAGTTAGTCCTTTAAACA 4742 ||| || || ||| | | || || | ||||| |||||||| || |||| |||| Sbjct 1233 TATTCAACACCTTCCGTGTCACCTCGGTGAGGTCATCCGCCATAGTGAGGCCTTGGAACA 1292 Query 4743 ATGGAACAAAGTGAGTCTTGATTAGGTGTTCTGTTATTACAAAATACTCTCGTAAAGCCC 4802 |||||| || || |||||||||| ||| || | || ||||| ||| | | Sbjct 1293 GTGGAACGAAATGTTCTTTGATTAGGTATTCAGTAACGACGAAATATTCT-------CTC 1345 Query 4803 AGGTCAATAGAGC-ATAAAATCTTCCTCCAATCTTGATCTCTCGCTCTTTTCCTTTAAGT 4861 |||||| ||||| | |||| | || | ||| | || |||||||||| | | | Sbjct 1346 AGGTCATGAGAGCAAAAAAAACGCCCGACCCGCTTCAAGTCCCGCTCTTTTCTCCTCAAT 1405 Query 4862 CCTATGATGAGA---TCCTCAAGAGTTAGTCCATTGTCATTGA-CTTCTTGCAGGAACTT 4917 || |||| ||| || ||| || ||||| | |||||| | | || || ||||| | Sbjct 1406 CCGATGACTAGAGAGTCTTCAGGA---AGTCCCTCGTCATTAATCCTC-TGGAGGAAGTC 1461 Query 4918 TTTCCACTCCGTTGCAGGTTT 4938 |||||| | || |||||||| Sbjct 1462 TTTCCAGACTGTGGCAGGTTT 1482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35953281936128