Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_031691.1 Length=11238 Score E Sequences producing significant alignments: (Bits) Value seq36779 154 1e-33 seq263735 136 3e-28 seq46121 123 2e-24 seq22788 113 3e-21 seq42553 91.5 1e-14 >seq36779 Length=13892 Score = 154 bits (170), Expect = 1e-33 Identities = 148/190 (78%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 4676 GAGTTATCTGCCATGGTTAGACCTTTAAATAATGGGACAAAATGCTTCTTGATCAGATAT 4735 |||| ||| ||||| || ||||| ||||||||||||||||| |||| |||||| |||||| Sbjct 5545 GAGTCATCGGCCATAGTCAGACCCTTAAATAATGGGACAAAGTGCTCCTTGATAAGATAT 5486 Query 4736 TCTGTTATTACGAAGTATTCTCTCAACTCCCAGGACATGAGCGCAAAAAATCTTCCTTTT 4795 ||||| || ||||||||||||| ||||||||||||||| || || ||||| | || | Sbjct 5485 TCTGTAATCACGAAGTATTCTCGCAACTCCCAGGACATAAGTGCTAAAAACCGACCCGCT 5426 Query 4796 ATTTTCAGTTCACGCTCTTTGCCTTTAAGTCCGATAAGAAGTTTCTCCTTATCCAGCCCC 4855 |||||| || | |||||| || | ||||| || | ||| |||| || ||| Sbjct 5425 CTTTTCATCTCCCTCTCTTTCCCCCTGAGTCCAATGACAAGAGAGTCCTGGGACAACCCA 5366 Query 4856 TGGTCATTGA 4865 |||||||||| Sbjct 5365 TGGTCATTGA 5356 >seq263735 Length=2160 Score = 136 bits (150), Expect = 3e-28 Identities = 266/384 (69%), Gaps = 13/384 (3%) Strand=Plus/Minus Query 4456 GTAATAAATCAGACTCTGTTCAAAGAATTCATGGGTTCTAGATATTAAGTTGGGGTATCC 4515 ||||||||| || || | |||||| |||||||| || | ||| | | |||||||| Sbjct 1594 GTAATAAATAAGGCTTTTTTCAAAAAATTCATGAGTCCGTTCTATCAGACTTGGGTATCC 1535 Query 4516 CAAAAATTGTCCCATTACCTTGAATGTGGGATTATTGG-CTGCTCCCCTCTGATGATTGT 4574 |||||||| ||||| || | ||| || |||| || || | |||| ||||| | Sbjct 1534 TAAAAATTGACCCATCACTCTAAATACATACTTGTTGGACTCCTTTC-TCTGGTGATTAT 1476 Query 4575 TCCATTTTTCATAATCTACATGGTTGGCAAAGCTTACATGAT-CAT-AATTATCCGTAC- 4631 |||||||| |||||| | ||||| |||| |||| ||| | | ||| ||| | | Sbjct 1475 TCCATTTTGTATAATCAATGTGGTTAGCAA----TACA-GATGCGTGAATAATCTGGGCA 1421 Query 4632 --CTTGACCATATGTGTTGTCCATTAATTTTTTAGTCAAAACGGTGGAGTTATCTGCCAT 4689 ||||||||| | || | ||| | || ||||| | | ||| | ||| ||||| Sbjct 1420 TCCTTGACCATCAGAATTATTCATCATCTTCTTAGTTACTTCAGTGAGATCATCAGCCAT 1361 Query 4690 GGTTAGACCTTTAAATAATGGGAC-AAAATGCTTCTTGATCAGATATTCTGTTATTACGA 4748 |||||| | | |||||| ||||| |||| | || || || | | |||| || | || | Sbjct 1360 GGTTAGTCTATCAAATAACGGGACAAAAAAGTTTTTTTATTAAAAATTCGGTCAACACAA 1301 Query 4749 AGTATTCTCTCAACTCCCAGGACATGAGCGCAAAAAATCTTCCTTTTATTTTCAGTTCAC 4808 | || || | || |||| ||||| | | ||||||||| ||| || | |||| ||| | Sbjct 1300 AATACTCACGTAAGGCCCATGACATTAAGGTAAAAAATCTACCTATTCTCTTCATTTCCC 1241 Query 4809 GCTCTTTGCCTTTAAGTCCGATAA 4832 ||||||| ||| ||||| |||| Sbjct 1240 GCTCTTTACCTCGGAGTCCTATAA 1217 >seq46121 Length=3043 Score = 123 bits (136), Expect = 2e-24 Identities = 232/337 (69%), Gaps = 23/337 (7%) Strand=Plus/Plus Query 4457 TAATAAATCAGACTCTGTTCAAAGAATTCATGGGTTCTAGATATTAAGTTGGGGTATCCC 4516 ||||| | |||||||| ||||||||| ||||| || || | |||| || |||||||| Sbjct 1043 TAATACACCAGACTCTTTTCAAAGAAGTCATGAGTCCTGGTGATTAGATTTGGGTATCCT 1102 Query 4517 AAAAATTGTCCCATTACCTTGAA----TGTGGGATTATTGGCTGCTCCCCTCTGATGATT 4572 || || ||||| || | ||| ||| || |||| | || || ||||| || Sbjct 1103 TGGAACTGGCCCATCACTTGGAAGACATGTTGG----TTGGATTCTTTCCGTTGATGGTT 1158 Query 4573 GTTCCATTTTTCATAATCTACATGGTTGGCAAAGCTTACATGATCAT-AATTATCCGTA- 4630 |||||||||||| || |||| ||||| |||| || | || || | ||| ||| | | Sbjct 1159 GTTCCATTTTTCGTAGTCTATGTGGTTAGCAATGC--AAAT--TCTTGAATAATCTGGAC 1214 Query 4631 --CCTTGACCATATGTGTTGTCCATTAATTTTTTAGTCAAAACGGTGGAGTTATCTGCCA 4688 ||||| |||| || || | || | || |||| ||||| || ||| |||| Sbjct 1215 ATCCTTGCCCATCTGAATTATTCAACACCTTCCGTGTCACCTCGGTGAGGTCATCCGCCA 1274 Query 4689 TGGTTAGACCTTTAAATAATGGGACAAAATGCTTCTTGATCAGATATTCTGTTATTACGA 4748 | || || |||| || | ||| || ||||| | ||||| || ||||| || | |||| Sbjct 1275 TAGTGAGGCCTTGGAACAGTGGAACGAAATGTTCTTTGATTAGGTATTCAGTAACGACGA 1334 Query 4749 AGTATTCTCTCAACTCCCAGGACATGAGCGCAAAAAA 4785 | |||||||| |||| |||||| |||||||| Sbjct 1335 AATATTCTCT-------CAGGTCATGAGAGCAAAAAA 1364 >seq22788 Length=2006 Score = 113 bits (124), Expect = 3e-21 Identities = 146/202 (72%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 4631 CCTTGACCATATGTGTTGTCCATTAATTTTTTAGTCAAAACGGTGGAGTTATCTGCCATG 4690 |||||||||| || | || ||| | ||||| ||| |||| | || ||||| Sbjct 1605 CCTTGACCATCTGAATGGTTCATCATCTTTTTCATCACCTCGGTTAGATCGTCAGCCATT 1664 Query 4691 GTTAGACCTTTAAATAATGGGACAAAATGCTTCTTGATCAGATATTCTGTTATTACGAAG 4750 ||||| || || ||||| || ||| ||| ||||||||||||||| ||||| || || ||| Sbjct 1665 GTTAGCCCCTTGAATAACGGAACATAATACTTCTTGATCAGATACTCTGTGATCACAAAG 1724 Query 4751 TATTCTCTCAACTCCCAGGACATGAGCGCAAAAAATCTTCCTTTTATTTTCAGTTCACGC 4810 || || | | | ||| ||||| | || ||| ||||||| | | |||| ||| || Sbjct 1725 TACTCACGGAGTTTCCATGACATTAAGGCGAAATATCTTCCGATCCTCTTCATTTCTCGT 1784 Query 4811 TCTTTGCCTTTAAGTCCGATAA 4832 ||||| ||| | |||||||||| Sbjct 1785 TCTTTCCCTCTTAGTCCGATAA 1806 >seq42553 Length=2057 Score = 91.5 bits (100), Expect = 1e-14 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 4682 TCTGCCATGGTTAGACCTTTAAATAATGGGACAAAATGCTTCTTGATCAGATATTCTGTT 4741 || ||||| |||| ||||| || || ||||| || |||| ||||| || || ||||| Sbjct 469 TCGGCCATTGTTAATCCTTTGAACAAGGGGACGAAGTGCTCTTTGATGAGGTACTCTGTG 528 Query 4742 ATTACGAAGTATTCTCTCAACTCCCAGGACATGAGCGCAAAAAATCTTCC 4791 | || ||||| |||| | |||||||||||||| |||||||||||||| Sbjct 529 AGGACAAAGTACTCTCGAAGATCCCAGGACATGAGAGCAAAAAATCTTCC 578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35730009248448