Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_001560.1 Length=11161 Score E Sequences producing significant alignments: (Bits) Value seq57646 141 7e-30 seq28589 114 9e-22 >seq57646 Length=1202957 Score = 141 bits (156), Expect = 7e-30 Identities = 314/470 (67%), Gaps = 1/470 (0%) Strand=Plus/Minus Query 6012 AAGAA-AATACATGGCCCACAGCTGCTCAAGTTCAAGATTTTGGAGATAAATGGCATGAA 6070 ||||| ||||||||||| || | ||||| | |||||||| || |||||||||| Sbjct 1171411 AAGAATAATACATGGCCAACTCATTCTCAAATAGTTGATTTTGGTGACCGATGGCATGAA 1171352 Query 6071 CTTCCGCTGATTAAATGTTTTGAAATACCCGACTTACTAGACCCATCGATAATATACTCT 6130 || ||| | |||||| ||||| |||||||| || |||| || |||| || || Sbjct 1171351 CTACCGTTATCTAAATGCTTTGAGATACCCGATGTAATAGATCCTAGTTTAATTTATTCA 1171292 Query 6131 GACAAAAGTCATTCAATGAATAGGTCAGAGGTGTTGAAACATGTCCGAATGAATCCGAAC 6190 || |||||||| || | | ||||| | | | ||| || || | ||| || Sbjct 1171291 GATAAAAGTCACTCTTATACTTTTTCAGAATTAAAGGAGCATATCTTAAAGTCTCCCAAT 1171232 Query 6191 ACTCCTATCCCTAGTAAAAAGGTGTTGCAGACTATGTTGGACACAAAGGCTACCAATTGG 6250 || ||| |||| | | ||||| | |||| | | | ||| | || || |||||| Sbjct 1171231 ACACCTGTCCCATCTCATAAGGTACTCAAGACATTCCTTCAAACAGAAGCCACAAATTGG 1171172 Query 6251 AAAGAATTTCTTAAAGAGATTGATGAGAAGGGCTTAGATGATGATGATCTAATTATTGGT 6310 || ||||| || || |||| |||| || ||||| || || || |||| ||| Sbjct 1171171 AAGGAATTCCTCAAGAAGATAAATGATTTTGGATTAGAGTTAGAGCATTTAGTTATAGGT 1171112 Query 6311 CTTAAAGGAAAGGAGAGGGAACTGAAGTTGGCAGGTAGATTTTTCTCCCTAATGTCTTGG 6370 || | ||| || || || ||| | || ||||||||| ||||| || ||| | ||| Sbjct 1171111 CTAAGAGGGAAAGAAAGAGAAATAAAAAGATTAGGTAGATTCTTCTCTCTGATGACATGG 1171052 Query 6371 AAATTGCGAGAATACTTTGTAATTACCGAATATTTGATAAAGACTCATTTCGTCCCTATG 6430 || | | || ||||||||||| || || ||| | || || | ||| | | || | Sbjct 1171051 CAACTCAGGGATTACTTTGTAATAACAGAGTATCTTATTAAAATTCACTATATTCCACTA 1170992 Query 6431 TTTAAAGGCCTGACAATGGCGGACGATCTAACTGCAGTCATTAAAAAGAT 6480 ||| ||| | || ||||| || ||| ||| | |||| || |||||||| Sbjct 1170991 TTTTCAGGGTTAACTATGGCCGATGATTTAAATTCAGTTATGAAAAAGAT 1170942 >seq28589 Length=6593 Score = 114 bits (126), Expect = 9e-22 Identities = 136/182 (75%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 6970 AATTATGACTGCAATCAAAATAGGGACAG-GGAAGTTAGGACTTTTGATAAATGACGATG 7028 ||| |||| || |||| || || || | |||| ||||| ||| | || || |||| Sbjct 2127 AATCATGAATGAAATCGAAG-AGAGAGCGAGGAAATTAGGTCTTATAATCAACAGAGATG 2185 Query 7029 AGACTATGCAATCTGCAGATTACTTGAATTATGGAAAAATACCGATTTTCCGTGGAGTGA 7088 | ||||||| ||||||||||| | ||| |||||| ||| | || | || || ||| | Sbjct 2186 AAACTATGCGATCTGCAGATTTCCTGAGTTATGGGAAAGTCCCTGTATTTCGAGGAAACA 2245 Query 7089 TTAGAGGGTTAGAGACCAAGAGATGGTCACGAGTGACTTGTGTCACCAATGACCAAATAC 7148 |||| || |||||||| || |||||||||||||| ||||| || ||||||| ||| | | Sbjct 2246 TTAGGGGATTAGAGACTAAAAGATGGTCACGAGTCACTTGCGTGTCCAATGATCAACTGC 2305 Query 7149 CC 7150 || Sbjct 2306 CC 2307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35575950375500