Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_002803.1 Length=11019 Score E Sequences producing significant alignments: (Bits) Value seq57646 125 5e-25 seq40018 111 1e-20 >seq57646 Length=1202957 Score = 125 bits (138), Expect = 5e-25 Identities = 129/167 (77%), Gaps = 4/167 (2%) Strand=Plus/Minus Query 6236 AGGGAAAGAAAGAGAGCTTAA--GATTGCGGGGAGATTCTTCTCTCTGATGTCATGGCAA 6293 ||||||||||||||| | || |||| || |||||||||||||||||| |||||||| Sbjct 1171106 AGGGAAAGAAAGAGAAATAAAAAGATTA--GGTAGATTCTTCTCTCTGATGACATGGCAA 1171049 Query 6294 TTGAGGGAGTACTTTGTAATTACAGAGTATCTGATCAAGACACATTATGTTCCGCTCTTC 6353 | ||||| ||||||||||| ||||||||||| || || | || ||| |||| || || Sbjct 1171048 CTCAGGGATTACTTTGTAATAACAGAGTATCTTATTAAAATTCACTATATTCCACTATTT 1170989 Query 6354 AAGGGATTAACGATGGCCGACGATCTAACCTCTGTGGTAAAGAAGAT 6400 || ||||| |||||||| ||| ||| || || | || ||||| Sbjct 1170988 TCAGGGTTAACTATGGCCGATGATTTAAATTCAGTTATGAAAAAGAT 1170942 >seq40018 Length=56561 Score = 111 bits (122), Expect = 1e-20 Identities = 277/414 (67%), Gaps = 10/414 (2%) Strand=Plus/Plus Query 6294 TTGAGGGAGTACTTTGTAATTACAGAGTATCTGATCAAGACACATTATGTTCCGCTCTTC 6353 || || || || |||||||| || ||||| ||||| || ||||| ||||| | || || Sbjct 43548 TTAAGAGAATATTTTGTAATCACCGAGTACCTGATTAAAACACACTATGTATCCCTGTTA 43607 Query 6354 AAGGGATTAACGATGGCCGACGATCTAACCTCTGTGGTAAAGAAGATGTTAGATAACACT 6413 || || | || ||||| || ||||||||| | || || |||||| | | |||| Sbjct 43608 AAAGGTCTCACTATGGCAGATGATCTAACCACACTGACAACAAAGATGATGAACTACAC- 43666 Query 6414 AATGGGCAAGGCT-TGGACGACTAC--TCATCTA--TATGCATTGCGAACCACATTGATT 6468 || ||| ||| | | | | || |||| | || || || || | || || | Sbjct 43667 AACGGGACAGGATCTAAATAATTATGATCATGTCAGTAGATATAGCAAATCTAATAGACT 43726 Query 6469 ATGAAAAATGGAACAATCATCAACGGAAAGAATCCAATGGGCCTGTATTTCGAGTCATGG 6528 | || |||||||||||| ||||| ||| | ||||||| | | | || || || ||| Sbjct 43727 AGGAGAAATGGAACAATAATCAAAGGAGACAATCCAACAGTCTGATCTTCCGTGTAATGA 43786 Query 6529 GTCAATTCTTAGGATACCCTCGACTGT--TTGAAAGGACACATGAATTCTTTGAGTCAAG 6586 || ||||| || | || || | | |||| |||||||| |||||||||||| || Sbjct 43787 GTGCGTTCTTGGGGTGTCC--GAATTTAATTGAGAGGACACACGAATTCTTTGAGAAGAG 43844 Query 6587 TCTCATTTATTATAACGGGAGGCCGGACCTGATGGATGTGAGAGGGGATTCTTTAGTGAA 6646 | | ||||| ||| || | || || |||||| || || ||| || | || Sbjct 43845 TTTGATTTACTATGCCGATAAACCTGATCTGATGAGGGTAGAAGATGATATGCTATTCAA 43904 Query 6647 TACAACAGATAAGATAGTCTGCTGGGAAGGGCAAGCAGGCGGATTAGAAGGGCT 6700 |||| |||| | | || |||||| | || ||| ||| || || |||||||| Sbjct 43905 CTCAACTGATAGGTTGGTGTGCTGGAATGGACAACGAGGGGGTTTGGAAGGGCT 43958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35121857345988