Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_008514.1 Length=11545 Score E Sequences producing significant alignments: (Bits) Value seq57646 105 5e-19 seq28589 104 2e-18 >seq57646 Length=1202957 Score = 105 bits (116), Expect = 5e-19 Identities = 144/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 6682 TGGGTTAGACGAAGAAGATCTGGTTATCGGATTGAAAGGGAAAGAAAGAGAATTAAAGAA 6741 ||| ||||| ||| || | ||||| || | | |||||||||||||||| |||| | Sbjct 1171142 TGGATTAGAGTTAGAGCATTTAGTTATAGGTCTAAGAGGGAAAGAAAGAGAAATAAAAAG 1171083 Query 6742 AGCAGGACGTTTCTTCTCCCTTATGTCATGGAAATTACGAGAGTATTTCGTCATGACAGA 6801 | ||| | |||||||| || ||| ||||| || | | || || || || || ||||| Sbjct 1171082 ATTAGGTAGATTCTTCTCTCTGATGACATGGCAACTCAGGGATTACTTTGTAATAACAGA 1171023 Query 6802 ATATCTGATCAAACACCACTTTGTCCCACTATTTCATGGATTGACTATGGCGGATGACAT 6861 ||||| || ||| |||| | | ||||||||| || || |||||||| ||||| | Sbjct 1171022 GTATCTTATTAAAATTCACTATATTCCACTATTTTCAGGGTTAACTATGGCCGATGATTT 1170963 Query 6862 GACTCAAGTTATGAAGAAAAT 6882 | | ||||||||| || || Sbjct 1170962 AAATTCAGTTATGAAAAAGAT 1170942 >seq28589 Length=6593 Score = 104 bits (114), Expect = 2e-18 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 7403 AAATTGGGTTTAATTATCAACAATGATGAGACTATCCAGTCAGCAGATTTCCTGACATAT 7462 ||||| ||| | || ||||||| ||||| ||||| | || ||||||||||||| ||| Sbjct 2158 AAATTAGGTCTTATAATCAACAGAGATGAAACTATGCGATCTGCAGATTTCCTGAGTTAT 2217 Query 7463 GGAAAAATACCAATCTTCCGCGGAAACATTCGTTGTCTAGAAGGGAAAAGGTGGTCCAGG 7522 || ||| | || | || || ||||||||| | | |||| ||||| ||||| | Sbjct 2218 GGGAAAGTCCCTGTATTTCGAGGAAACATTAGGGGATTAGAGACTAAAAGATGGTCACGA 2277 Query 7523 GTGACATGTGTGACCAATGATCAACTTCCAAATTTATCTAATGTTTTGTCATCAGTCTCA 7582 || || || ||| ||||||||||||| || ||| ||| | ||||| | || || Sbjct 2278 GTCACTTGCGTGTCCAATGATCAACTGCCCGGATTAGGGAATATCTTGTCGACTGTATCT 2337 Query 7583 ACAAATGCTCTAACCGTCTCTCACT 7607 ||||||| | || ||||| |||| Sbjct 2338 TCAAATGCCTTGACAGTCTCACACT 2362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 36803920258124