Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21]
60,049 sequences; 728,788,927 total letters
Query= NC_011639.1
Length=13196
Score E
Sequences producing significant alignments: (Bits) Value
seq40018 158 1e-34
seq57646 152 4e-33
seq28589 82.4 6e-12
>seq40018
Length=56561
Score = 158 bits (174), Expect = 1e-34
Identities = 334/489 (68%), Gaps = 26/489 (5%)
Strand=Plus/Plus
Query 8415 TAAAGAAAGAGAAATGAAACGGATTGGAAGATTCTTCTCTTTAATGTCATGGGAACTCAG 8474
|||||||||||| | ||| ||||||| |||| ||| | || | | ||
Sbjct 43505 TAAAGAAAGAGAGTTAAAAAGGATTGGTCGATTTTTCAC---AAGCTTA---------AG 43552
Query 8475 AGAGTATTTTGTTTTTACTGAGTACCTTATTAAGGAATATTTTGTTCCTCTATTCCATGG 8534
||| |||||||| | || |||||||| ||||| | | | ||| | || || | ||
Sbjct 43553 AGAATATTTTGTAATCACCGAGTACCTGATTAAAACACACTATGTATCCCTGTTAAAAGG 43612
Query 8535 ATTAACTATGGCTGATGATCTA--CAATCTGTTATAAAGAAGATGTTAGAAAATTCTCAA 8592
| |||||||| ||||||||| || ||| | || |||||| | || | | |||
Sbjct 43613 TCTCACTATGGCAGATGATCTAACCACACTG--ACAACAAAGATGATG--AACTACACAA 43668
Query 8593 GGCCA-AGGATCTAA-TGATTATGAGTATGT---TTCA-ATAGCAAATCATATTGATTAT 8646
| | ||||||||| | ||||||| |||| | | |||||||||| || || ||
Sbjct 43669 CGGGACAGGATCTAAATAATTATGATCATGTCAGTAGATATAGCAAATCTAATAGACTAG 43728
Query 8647 GAAAAATGGAATAATCACCAAAGGAAAGAATCAAATTATTATGTT-TTCAAAGTAATGGG 8705
|| |||||||| ||| | ||||||| | |||| || | | || | ||| |||||| |
Sbjct 43729 GAGAAATGGAACAATAATCAAAGGAGACAATCCAAC-AGTCTGATCTTCCGTGTAATGAG 43787
Query 8706 CCAGTGTTTCGGTCTTCCAAACTTATTTACACGAACACATGAATTCTTTGAACAAAGTTT 8765
|| || || ||| || ||| || | ||||| ||||||||||| | |||||
Sbjct 43788 TGCGTTCTTGGGGTGTCCGAATTTAATTGAGAGGACACACGAATTCTTTGAGAAGAGTTT 43847
Query 8766 GATTTATTATCCTCAAAGAGCTGATTTGATGCACGTTGAAGGCGATACACTAACAAACTC 8825
|||||| ||| | | | | ||||| ||||| || |||| |||| ||| |||||
Sbjct 43848 GATTTACTATGCCGATAAACCTGATCTGATGAGGGTAGAAGATGATATGCTATTCAACTC 43907
Query 8826 GTCCGCATCACTGGTGTGTTGGAATGGACAAAAAGGGGGTTTAGAAGGATTAAGACAAAA 8885
| | ||||||| |||||||||||| ||||||||| ||||| ||||| ||||
Sbjct 43908 AACTGATAGGTTGGTGTGCTGGAATGGACAACGAGGGGGTTTGGAAGGGCTAAGATAAAA 43967
Query 8886 AGGATGGTC 8894
||| |||||
Sbjct 43968 AGGTTGGTC 43976
>seq57646
Length=1202957
Score = 152 bits (168), Expect = 4e-33
Identities = 177/237 (75%), Gaps = 4/237 (2%)
Strand=Plus/Minus
Query 8342 ATTGGAAATCATTCTTGCAAAAGATAAATGACTTTGGATTAGATTTGAAGTCTCTCATCA 8401
||||||| |||| | | ||||||||||| ||||||||||| || || | | | |
Sbjct 1171176 ATTGGAAGGAATTCCTCAAGAAGATAAATGATTTTGGATTAGAGTTAGAGCATTTAGTTA 1171117
Query 8402 TTGGACTAAAAGCTAAAGAAAGAGAAATGAAACGGATTGGAAGATTCTTCTCTTTAATGT 8461
| || |||| || |||||||||||||| ||| | | || |||||||||||| | |||
Sbjct 1171116 TAGGTCTAAGAGGGAAAGAAAGAGAAATAAAAAGATTAGGTAGATTCTTCTCTCTGATGA 1171057
Query 8462 CATGGGAACTCAGAGAGTATTTTGTTTTTACTGAGTACCTTATTAAGGAAT--ATTTTGT 8519
||||| ||||||| || || ||||| | || ||||| |||||||| ||| | | | |
Sbjct 1171056 CATGGCAACTCAGGGATTACTTTGTAATAACAGAGTATCTTATTAA--AATTCACTATAT 1170999
Query 8520 TCCTCTATTCCATGGATTAACTATGGCTGATGATCTACAATCTGTTATAAAGAAGAT 8576
||| ||||| || ||||||||||| |||||| || | || ||||| || |||||
Sbjct 1170998 TCCACTATTTTCAGGGTTAACTATGGCCGATGATTTAAATTCAGTTATGAAAAAGAT 1170942
>seq28589
Length=6593
Score = 82.4 bits (90), Expect = 6e-12
Identities = 180/267 (67%), Gaps = 2/267 (1%)
Strand=Plus/Plus
Query 9044 ATATTTGTAAGAATAATAAAGCTATTATGAATGCGATTGAAGCAGGGA-CAACTAAATTG 9102
|||||| | ||||| || | || ||||||| || |||| || || | | |||||
Sbjct 2105 ATATTTCTCTCAATAACAATTCAATCATGAATGAAATCGAAG-AGAGAGCGAGGAAATTA 2163
Query 9103 GGGTTGATAATAAATCGTGATGAGACTATGATAAGTGCCGATTATTTAAATTATGGGAAA 9162
|| | ||||| || | ||||| |||||| | ||| |||| | | ||||||||||
Sbjct 2164 GGTCTTATAATCAACAGAGATGAAACTATGCGATCTGCAGATTTCCTGAGTTATGGGAAA 2223
Query 9163 GTCCCAATTTTTAGAGGGGTTATTAGAGGCTTGCATCTCAAAAGATGGTCAAGAGTCAAT 9222
||||| | ||| |||| ||||| || || | |||||||||||| |||||| |
Sbjct 2224 GTCCCTGTATTTCGAGGAAACATTAGGGGATTAGAGACTAAAAGATGGTCACGAGTCACT 2283
Query 9223 TGTGTAACAAACGATCAAGTCCCATCTTTGAGTAATTCTTTGGCTAGTTGTGCAACAAAC 9282
|| || | || |||||| | || || | ||| ||| | | | | ||||
Sbjct 2284 TGCGTGTCCAATGATCAACTGCCCGGATTAGGGAATATCTTGTCGACTGTATCTTCAAAT 2343
Query 9283 TCATTAACGGTCTCACATTACTCGGAA 9309
| || || |||||||| |||||||||
Sbjct 2344 GCCTTGACAGTCTCACACTACTCGGAA 2370
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 42079563162733
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |