Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_011639.1 Length=13196 Score E Sequences producing significant alignments: (Bits) Value seq40018 158 1e-34 seq57646 152 4e-33 seq28589 82.4 6e-12 >seq40018 Length=56561 Score = 158 bits (174), Expect = 1e-34 Identities = 334/489 (68%), Gaps = 26/489 (5%) Strand=Plus/Plus Query 8415 TAAAGAAAGAGAAATGAAACGGATTGGAAGATTCTTCTCTTTAATGTCATGGGAACTCAG 8474 |||||||||||| | ||| ||||||| |||| ||| | || | | || Sbjct 43505 TAAAGAAAGAGAGTTAAAAAGGATTGGTCGATTTTTCAC---AAGCTTA---------AG 43552 Query 8475 AGAGTATTTTGTTTTTACTGAGTACCTTATTAAGGAATATTTTGTTCCTCTATTCCATGG 8534 ||| |||||||| | || |||||||| ||||| | | | ||| | || || | || Sbjct 43553 AGAATATTTTGTAATCACCGAGTACCTGATTAAAACACACTATGTATCCCTGTTAAAAGG 43612 Query 8535 ATTAACTATGGCTGATGATCTA--CAATCTGTTATAAAGAAGATGTTAGAAAATTCTCAA 8592 | |||||||| ||||||||| || ||| | || |||||| | || | | ||| Sbjct 43613 TCTCACTATGGCAGATGATCTAACCACACTG--ACAACAAAGATGATG--AACTACACAA 43668 Query 8593 GGCCA-AGGATCTAA-TGATTATGAGTATGT---TTCA-ATAGCAAATCATATTGATTAT 8646 | | ||||||||| | ||||||| |||| | | |||||||||| || || || Sbjct 43669 CGGGACAGGATCTAAATAATTATGATCATGTCAGTAGATATAGCAAATCTAATAGACTAG 43728 Query 8647 GAAAAATGGAATAATCACCAAAGGAAAGAATCAAATTATTATGTT-TTCAAAGTAATGGG 8705 || |||||||| ||| | ||||||| | |||| || | | || | ||| |||||| | Sbjct 43729 GAGAAATGGAACAATAATCAAAGGAGACAATCCAAC-AGTCTGATCTTCCGTGTAATGAG 43787 Query 8706 CCAGTGTTTCGGTCTTCCAAACTTATTTACACGAACACATGAATTCTTTGAACAAAGTTT 8765 || || || ||| || ||| || | ||||| ||||||||||| | ||||| Sbjct 43788 TGCGTTCTTGGGGTGTCCGAATTTAATTGAGAGGACACACGAATTCTTTGAGAAGAGTTT 43847 Query 8766 GATTTATTATCCTCAAAGAGCTGATTTGATGCACGTTGAAGGCGATACACTAACAAACTC 8825 |||||| ||| | | | | ||||| ||||| || |||| |||| ||| ||||| Sbjct 43848 GATTTACTATGCCGATAAACCTGATCTGATGAGGGTAGAAGATGATATGCTATTCAACTC 43907 Query 8826 GTCCGCATCACTGGTGTGTTGGAATGGACAAAAAGGGGGTTTAGAAGGATTAAGACAAAA 8885 | | ||||||| |||||||||||| ||||||||| ||||| ||||| |||| Sbjct 43908 AACTGATAGGTTGGTGTGCTGGAATGGACAACGAGGGGGTTTGGAAGGGCTAAGATAAAA 43967 Query 8886 AGGATGGTC 8894 ||| ||||| Sbjct 43968 AGGTTGGTC 43976 >seq57646 Length=1202957 Score = 152 bits (168), Expect = 4e-33 Identities = 177/237 (75%), Gaps = 4/237 (2%) Strand=Plus/Minus Query 8342 ATTGGAAATCATTCTTGCAAAAGATAAATGACTTTGGATTAGATTTGAAGTCTCTCATCA 8401 ||||||| |||| | | ||||||||||| ||||||||||| || || | | | | Sbjct 1171176 ATTGGAAGGAATTCCTCAAGAAGATAAATGATTTTGGATTAGAGTTAGAGCATTTAGTTA 1171117 Query 8402 TTGGACTAAAAGCTAAAGAAAGAGAAATGAAACGGATTGGAAGATTCTTCTCTTTAATGT 8461 | || |||| || |||||||||||||| ||| | | || |||||||||||| | ||| Sbjct 1171116 TAGGTCTAAGAGGGAAAGAAAGAGAAATAAAAAGATTAGGTAGATTCTTCTCTCTGATGA 1171057 Query 8462 CATGGGAACTCAGAGAGTATTTTGTTTTTACTGAGTACCTTATTAAGGAAT--ATTTTGT 8519 ||||| ||||||| || || ||||| | || ||||| |||||||| ||| | | | | Sbjct 1171056 CATGGCAACTCAGGGATTACTTTGTAATAACAGAGTATCTTATTAA--AATTCACTATAT 1170999 Query 8520 TCCTCTATTCCATGGATTAACTATGGCTGATGATCTACAATCTGTTATAAAGAAGAT 8576 ||| ||||| || ||||||||||| |||||| || | || ||||| || ||||| Sbjct 1170998 TCCACTATTTTCAGGGTTAACTATGGCCGATGATTTAAATTCAGTTATGAAAAAGAT 1170942 >seq28589 Length=6593 Score = 82.4 bits (90), Expect = 6e-12 Identities = 180/267 (67%), Gaps = 2/267 (1%) Strand=Plus/Plus Query 9044 ATATTTGTAAGAATAATAAAGCTATTATGAATGCGATTGAAGCAGGGA-CAACTAAATTG 9102 |||||| | ||||| || | || ||||||| || |||| || || | | ||||| Sbjct 2105 ATATTTCTCTCAATAACAATTCAATCATGAATGAAATCGAAG-AGAGAGCGAGGAAATTA 2163 Query 9103 GGGTTGATAATAAATCGTGATGAGACTATGATAAGTGCCGATTATTTAAATTATGGGAAA 9162 || | ||||| || | ||||| |||||| | ||| |||| | | |||||||||| Sbjct 2164 GGTCTTATAATCAACAGAGATGAAACTATGCGATCTGCAGATTTCCTGAGTTATGGGAAA 2223 Query 9163 GTCCCAATTTTTAGAGGGGTTATTAGAGGCTTGCATCTCAAAAGATGGTCAAGAGTCAAT 9222 ||||| | ||| |||| ||||| || || | |||||||||||| |||||| | Sbjct 2224 GTCCCTGTATTTCGAGGAAACATTAGGGGATTAGAGACTAAAAGATGGTCACGAGTCACT 2283 Query 9223 TGTGTAACAAACGATCAAGTCCCATCTTTGAGTAATTCTTTGGCTAGTTGTGCAACAAAC 9282 || || | || |||||| | || || | ||| ||| | | | | |||| Sbjct 2284 TGCGTGTCCAATGATCAACTGCCCGGATTAGGGAATATCTTGTCGACTGTATCTTCAAAT 2343 Query 9283 TCATTAACGGTCTCACATTACTCGGAA 9309 | || || |||||||| ||||||||| Sbjct 2344 GCCTTGACAGTCTCACACTACTCGGAA 2370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 42079563162733